Hapln3 (hyaluronan and proteoglycan link protein 3) - Rat Genome Database

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Gene: Hapln3 (hyaluronan and proteoglycan link protein 3) Ictidomys tridecemlineatus
Analyze
Symbol: Hapln3
Name: hyaluronan and proteoglycan link protein 3
RGD ID: 12486699
Description: ENCODES a protein that exhibits hyaluronic acid binding (inferred); INVOLVED IN cell adhesion (inferred); central nervous system development (inferred); glial cell differentiation (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); D-2-hydroxyglutaric aciduria 2 (ortholog); FOUND IN extracellular space (inferred); perineuronal net (inferred); synapse (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hyaluronan and proteoglycan link protein 3, transcript variant X1; hyaluronan and proteoglycan link protein 3, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640131,466,499 - 131,485,296 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648314,849,183 - 14,859,212 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648314,849,778 - 14,868,094 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Hapln3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640131,466,499 - 131,485,296 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648314,849,183 - 14,859,212 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648314,849,778 - 14,868,094 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HAPLN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381588,877,294 - 88,895,544 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1588,877,294 - 88,895,597 (-)EnsemblGRCh38hg38GRCh38
GRCh371589,420,525 - 89,438,775 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361587,221,523 - 87,239,774 (-)NCBINCBI36Build 36hg18NCBI36
Build 341587,221,522 - 87,239,774NCBI
Celera1565,821,836 - 65,840,086 (-)NCBICelera
Cytogenetic Map15q26.1NCBI
HuRef1565,532,521 - 65,550,982 (-)NCBIHuRef
CHM1_11589,261,164 - 89,279,411 (-)NCBICHM1_1
T2T-CHM13v2.01586,631,937 - 86,650,187 (-)NCBIT2T-CHM13v2.0
Hapln3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39778,766,775 - 78,783,100 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl778,764,850 - 78,780,766 (-)EnsemblGRCm39 Ensembl
GRCm38779,117,027 - 79,133,173 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl779,115,102 - 79,131,018 (-)EnsemblGRCm38mm10GRCm38
MGSCv37786,261,913 - 86,275,904 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36778,990,540 - 79,004,531 (-)NCBIMGSCv36mm8
Celera776,516,725 - 76,530,397 (-)NCBICelera
Cytogenetic Map7D2NCBI
cM Map744.9NCBI
Hapln3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81142,455,828 - 142,473,877 (-)NCBIGRCr8
mRatBN7.21133,046,465 - 133,064,665 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1133,046,467 - 133,080,177 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1140,963,124 - 140,971,002 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01148,132,553 - 148,140,431 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01141,050,237 - 141,058,112 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01140,827,279 - 140,845,386 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1140,827,295 - 140,835,151 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01141,796,040 - 141,814,155 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41134,851,830 - 134,859,702 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11134,930,188 - 134,938,045 (-)NCBI
Celera1125,117,287 - 125,125,159 (-)NCBICelera
Cytogenetic Map1q31NCBI
Hapln3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541616,105,772 - 16,122,139 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541616,105,937 - 16,122,114 (+)NCBIChiLan1.0ChiLan1.0
HAPLN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21678,421,619 - 78,441,617 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11582,126,180 - 82,145,644 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01567,565,957 - 67,584,352 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11586,773,882 - 86,792,120 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1586,773,882 - 86,792,120 (-)Ensemblpanpan1.1panPan2
HAPLN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1352,033,985 - 52,052,572 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl352,033,991 - 52,051,617 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha354,670,357 - 54,687,625 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0352,452,939 - 52,470,195 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl352,452,939 - 52,499,723 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1351,975,441 - 51,992,700 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0352,185,842 - 52,203,160 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0352,524,684 - 52,541,966 (-)NCBIUU_Cfam_GSD_1.0
HAPLN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl754,519,800 - 54,537,434 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1754,519,790 - 54,537,429 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2759,486,447 - 59,502,356 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HAPLN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1297,419,345 - 7,456,484 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl297,419,329 - 7,439,666 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605939,397,832 - 39,421,309 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hapln3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476816,158,506 - 16,170,558 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476816,146,374 - 16,170,598 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000026971   ⟹   ENSSTOP00000021325
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648314,849,183 - 14,859,212 (-)Ensembl
RefSeq Acc Id: XM_005320226   ⟹   XP_005320283
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640131,466,499 - 131,485,296 (+)NCBI
SpeTri2.0NW_00493648314,849,778 - 14,868,094 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021722891   ⟹   XP_021578566
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640131,474,710 - 131,485,296 (+)NCBI
SpeTri2.0NW_00493648314,849,778 - 14,859,389 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005320283 (Get FASTA)   NCBI Sequence Viewer  
  XP_021578566 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000021325.1
GenBank Protein KAG3262601 (Get FASTA)   NCBI Sequence Viewer  
  KAG3262602 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005320283   ⟸   XM_005320226
- Peptide Label: isoform X2
- UniProtKB: I3NAC8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021578566   ⟸   XM_021722891
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSSTOP00000021325   ⟸   ENSSTOT00000026971
Protein Domains
Ig-like   Link


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000021403 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000026971.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like/link_sf UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  Link_dom UniProtKB/TrEMBL
NCBI Gene Hapln3 ENTREZGENE
PANTHER AGGRECAN/VERSICAN PROTEOGLYCAN UniProtKB/TrEMBL
  HYALURONAN AND PROTEOGLYCAN LINK PROTEIN 3 UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
  Xlink UniProtKB/TrEMBL
PRINTS LINKMODULE UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  LINK_1 UniProtKB/TrEMBL
  LINK_2 UniProtKB/TrEMBL
SMART IGv UniProtKB/TrEMBL
  LINK UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF56436 UniProtKB/TrEMBL
UniProt I3NAC8 ENTREZGENE, UniProtKB/TrEMBL