LOC120890581 (frataxin, mitochondrial-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC120890581 (frataxin, mitochondrial-like) Ictidomys tridecemlineatus
Analyze
Symbol: LOC120890581
Name: frataxin, mitochondrial-like
RGD ID: 124773990
Description: ENCODES a protein that exhibits 2 iron, 2 sulfur cluster binding (inferred); ferric iron binding (inferred); ferrous iron binding (inferred); INVOLVED IN intracellular iron ion homeostasis (inferred); iron ion transport (inferred); FOUND IN cytosol (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FXN-like
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,439,001 - 26,439,613 (+)NCBIHiC_Itri_2


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)
mitochondrion  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_040287704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_040287704   ⟹   XP_040143638
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505826,439,001 - 26,439,613 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040143638 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000028944.1
GenBank Protein KAG3281781 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040143638   ⟸   XM_040287704
- UniProtKB: A0A287D5W9 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000034466 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000033510.1 UniProtKB/TrEMBL
Gene3D-CATH Frataxin/CyaY UniProtKB/TrEMBL
InterPro Frataxin UniProtKB/TrEMBL
  Frataxin/CyaY UniProtKB/TrEMBL
  Frataxin/CyaY_sf UniProtKB/TrEMBL
  Frataxin_CS UniProtKB/TrEMBL
NCBI Gene LOC120890581 ENTREZGENE
PANTHER FRATAXIN UniProtKB/TrEMBL
  FRATAXIN, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam Frataxin_Cyay UniProtKB/TrEMBL
PRINTS FRATAXIN UniProtKB/TrEMBL
PROSITE FRATAXIN_1 UniProtKB/TrEMBL
  FRATAXIN_2 UniProtKB/TrEMBL
SMART Frataxin_Cyay UniProtKB/TrEMBL
Superfamily-SCOP Frataxin/Nqo15-like UniProtKB/TrEMBL
UniProt A0A287D5W9 ENTREZGENE, UniProtKB/TrEMBL