LOC101976400 (ATPase family AAA domain-containing protein 3) - Rat Genome Database

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Gene: LOC101976400 (ATPase family AAA domain-containing protein 3) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101976400 (Ensembl: ATAD3A)
Name: ATPase family AAA domain-containing protein 3
RGD ID: 12477248
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); zinc ion binding (inferred); INVOLVED IN antiviral innate immune response (inferred); mitochondrion organization (inferred); negative regulation of apoptotic process (inferred); FOUND IN membrane (inferred); mitochondrial inner membrane (inferred); mitochondrial nucleoid (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATPase family AAA domain-containing protein 3, transcript variant X1; ATPase family AAA domain-containing protein 3, transcript variant X2
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505827,734,808 - 27,753,980 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367371,707,924 - 1,731,016 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367371,711,972 - 1,731,163 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000019938   ⟹   ENSSTOP00000021677
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367371,712,379 - 1,731,016 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000031533   ⟹   ENSSTOP00000029865
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367371,707,924 - 1,731,016 (-)Ensembl
RefSeq Acc Id: XM_005339251   ⟹   XP_005339308
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505827,734,812 - 27,753,980 (+)NCBI
SpeTri2.0NW_0049367371,711,972 - 1,731,162 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040287754   ⟹   XP_040143688
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505827,735,235 - 27,753,980 (+)NCBI
RefSeq Acc Id: XR_001230173
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505827,734,808 - 27,753,536 (+)NCBI
SpeTri2.0NW_0049367371,712,262 - 1,731,163 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005339308 (Get FASTA)   NCBI Sequence Viewer  
  XP_040143688 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000021677.2
  ENSSTOP00000029865.1
GenBank Protein KAG3281908 (Get FASTA)   NCBI Sequence Viewer  
  KAG3281909 (Get FASTA)   NCBI Sequence Viewer  
  KAG3281910 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005339308   ⟸   XM_005339251
- Peptide Label: isoform X1
- UniProtKB: A0A287D8I4 (UniProtKB/TrEMBL),   I3NBD0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040143688   ⟸   XM_040287754
- Peptide Label: isoform X2
- UniProtKB: I3NBD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000029865   ⟸   ENSSTOT00000031533
RefSeq Acc Id: ENSSTOP00000021677   ⟸   ENSSTOT00000019938
Protein Domains
AAA+ ATPase   ATPase AAA-type core   ATPase family AAA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000022939 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000019938.2 UniProtKB/TrEMBL
  ENSSTOT00000031533.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.60 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ATAD3 UniProtKB/TrEMBL
  ATAD3_N UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene LOC101976400 ENTREZGENE
PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
  PTHR23075 UniProtKB/TrEMBL
Pfam AAA UniProtKB/TrEMBL
  DUF3523 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A287D8I4 ENTREZGENE, UniProtKB/TrEMBL
  I3NBD0 ENTREZGENE, UniProtKB/TrEMBL