LOC101956464 (non-histone chromosomal protein HMG-17) - Rat Genome Database

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Gene: LOC101956464 (non-histone chromosomal protein HMG-17) Ictidomys tridecemlineatus
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Symbol: LOC101956464
Name: non-histone chromosomal protein HMG-17
RGD ID: 12476795
Description: ENCODES a protein that exhibits chromatin binding (inferred); nucleosomal DNA binding (inferred); INVOLVED IN chromatin organization (inferred); FOUND IN chromatin (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: HMGN2
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947105,474,093 - 105,474,488 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365428,395,521 - 8,395,897 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005328407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005328407   ⟹   XP_005328464
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947105,474,093 - 105,474,488 (+)NCBI
SpeTri2.0NW_0049365428,395,521 - 8,395,897 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005328464 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000021491.2
  ENSSTOP00000022685.2
GenBank Protein KAG3286785 (Get FASTA)   NCBI Sequence Viewer  
  KAG3286786 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005328464   ⟸   XM_005328407
- UniProtKB: I3NAU4 (UniProtKB/TrEMBL),   I3NE88 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000022956 UniProtKB/TrEMBL
  ENSSTOG00000031991 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000023557.2 UniProtKB/TrEMBL
  ENSSTOT00000024591.2 UniProtKB/TrEMBL
InterPro HMGN_fam UniProtKB/TrEMBL
NCBI Gene LOC101956464 ENTREZGENE
PANTHER NON-HISTONE CHROMOSOMAL PROTEIN HMG-17 UniProtKB/TrEMBL
  NONHISTONE CHROMOSOMAL PROTEIN HMG UniProtKB/TrEMBL
Pfam HMG14_17 UniProtKB/TrEMBL
PRINTS NONHISHMG17 UniProtKB/TrEMBL
PROSITE HMG14_17 UniProtKB/TrEMBL
SMART HMG17 UniProtKB/TrEMBL
UniProt I3NAU4 ENTREZGENE, UniProtKB/TrEMBL
  I3NE88 ENTREZGENE
UniProt Secondary I3NE88 UniProtKB/TrEMBL