Nxf3 (nuclear RNA export factor 3) - Rat Genome Database

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Pathways
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Gene: Nxf3 (nuclear RNA export factor 3) Ictidomys tridecemlineatus
Analyze
Symbol: Nxf3
Name: nuclear RNA export factor 3
RGD ID: 12476136
Description: ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN mRNA export from nucleus (ortholog); poly(A)+ mRNA export from nucleus (ortholog); PARTICIPATES IN CRM1 export pathway; ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN cytoplasm (ortholog); nuclear RNA export factor complex (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X61,745,701 - 61,757,925 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365478,066,413 - 8,084,756 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nxf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X61,745,701 - 61,757,925 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365478,066,413 - 8,084,756 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NXF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X103,075,810 - 103,093,143 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX103,075,810 - 103,093,143 (-)EnsemblGRCh38hg38GRCh38
GRCh37X102,330,738 - 102,348,071 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X102,217,405 - 102,234,678 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X102,136,896 - 102,154,167NCBI
CeleraX102,769,795 - 102,787,069 (-)NCBICelera
Cytogenetic MapXq22.1NCBI
HuRefX91,994,756 - 92,011,809 (-)NCBIHuRef
CHM1_1X102,223,442 - 102,240,732 (-)NCBICHM1_1
T2T-CHM13v2.0X101,520,737 - 101,538,070 (-)NCBIT2T-CHM13v2.0
Nxf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X134,972,272 - 135,040,382 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX134,972,848 - 134,986,004 (-)EnsemblGRCm39 Ensembl
GRCm38X136,071,523 - 136,139,579 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX136,072,099 - 136,085,255 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X132,606,638 - 132,619,794 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X131,418,463 - 131,431,619 (-)NCBIMGSCv36mm8
CeleraX119,387,499 - 119,400,626 (-)NCBICelera
Cytogenetic MapXF1NCBI
cM MapX57.38NCBI
Nxf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X103,817,508 - 103,842,038 (-)NCBIGRCr8
mRatBN7.2X99,025,901 - 99,050,409 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX99,025,901 - 99,039,261 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX101,161,543 - 101,173,875 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X104,672,156 - 104,684,488 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X102,224,004 - 102,236,334 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X106,562,957 - 106,587,487 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX106,563,984 - 106,576,314 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X106,534,942 - 106,559,308 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X123,329,678 - 123,342,473 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX100,106,880 - 100,119,210 (+)NCBICelera
Cytogenetic MapXq32NCBI
NXF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X102,681,710 - 102,700,137 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X102,685,315 - 102,703,742 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X92,300,328 - 92,317,613 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X102,679,383 - 102,696,618 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX102,679,383 - 102,696,618 (-)Ensemblpanpan1.1panPan2
NXF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_TashaX62,687,089 - 62,699,509 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X78,002,045 - 78,014,584 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX78,065,653 - 78,076,889 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X75,490,319 - 75,502,822 (+)NCBIUMICH_Zoey_3.1
UU_Cfam_GSD_1.0X76,928,146 - 76,940,682 (+)NCBIUU_Cfam_GSD_1.0
LOC102164431
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X83,980,605 - 83,989,335 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X97,234,550 - 97,235,202 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NXF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X90,997,859 - 91,054,806 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX90,997,653 - 91,011,235 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606515,830,843 - 15,848,675 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040283045   ⟹   XP_040138979
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X61,745,702 - 61,757,925 (+)NCBI
RefSeq Acc Id: XM_040283048   ⟹   XP_040138982
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X61,745,701 - 61,757,925 (+)NCBI
RefSeq Acc Id: XM_040283052   ⟹   XP_040138986
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X61,745,702 - 61,757,925 (+)NCBI
RefSeq Acc Id: XM_040283055   ⟹   XP_040138989
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X61,745,701 - 61,757,925 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040138979 (Get FASTA)   NCBI Sequence Viewer  
  XP_040138982 (Get FASTA)   NCBI Sequence Viewer  
  XP_040138986 (Get FASTA)   NCBI Sequence Viewer  
  XP_040138989 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3272560 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040138989   ⟸   XM_040283055
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040138982   ⟸   XM_040283048
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040138979   ⟸   XM_040283045
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040138986   ⟸   XM_040283052
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
NCBI Gene Nxf3 ENTREZGENE