Thg1l (tRNA-histidine guanylyltransferase 1 like) - Rat Genome Database

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Gene: Thg1l (tRNA-histidine guanylyltransferase 1 like) Ictidomys tridecemlineatus
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Symbol: Thg1l
Name: tRNA-histidine guanylyltransferase 1 like
RGD ID: 12459184
Description: ENCODES a protein that exhibits ATP binding (inferred); GTP binding (inferred); guanyl-nucleotide exchange factor activity (inferred); INVOLVED IN mitochondrial fusion (inferred); protein homotetramerization (inferred); response to oxidative stress (inferred); ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 28 (ortholog); Fibrosis (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (inferred); transferase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: probable tRNA(His) guanylyltransferase; tRNA-histidine guanylyltransferase 1 like, transcript variant X1; tRNA-histidine guanylyltransferase 1 like, transcript variant X2; tRNA-histidine guanylyltransferase 1 like, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213107,013,000 - 107,019,071 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365155,461,363 - 5,468,517 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365155,462,344 - 5,468,475 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Thg1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213107,013,000 - 107,019,071 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365155,461,363 - 5,468,517 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365155,462,344 - 5,468,475 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
THG1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385157,731,420 - 157,741,449 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5157,731,420 - 157,741,449 (+)EnsemblGRCh38hg38GRCh38
GRCh375157,158,428 - 157,168,457 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365157,090,901 - 157,099,350 (+)NCBINCBI36Build 36hg18NCBI36
Celera5153,184,922 - 153,193,373 (+)NCBICelera
Cytogenetic Map5q33.3NCBI
HuRef5152,246,932 - 152,255,383 (+)NCBIHuRef
CHM1_15156,591,041 - 156,599,478 (+)NCBICHM1_1
T2T-CHM13v2.05158,250,432 - 158,260,460 (+)NCBIT2T-CHM13v2.0
Thg1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391145,836,132 - 45,846,330 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1145,837,670 - 45,846,321 (-)EnsemblGRCm39 Ensembl
GRCm381145,945,305 - 45,955,503 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1145,946,843 - 45,955,494 (-)EnsemblGRCm38mm10GRCm38
MGSCv371145,761,656 - 45,768,996 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361145,790,266 - 45,798,926 (-)NCBIMGSCv36mm8
Celera1150,536,819 - 50,544,157 (-)NCBICelera
Cytogenetic Map11B1.1NCBI
cM Map1127.47NCBI
Thg1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81030,889,259 - 30,897,903 (-)NCBIGRCr8
mRatBN7.21030,387,929 - 30,396,579 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1030,387,940 - 30,396,687 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1035,116,353 - 35,123,762 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0103,654,794 - 3,662,203 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01030,090,540 - 30,097,946 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01031,043,647 - 31,052,092 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1031,043,688 - 31,052,102 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01030,866,222 - 30,873,429 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41031,087,575 - 31,094,986 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11031,088,625 - 31,096,035 (-)NCBI
Celera1029,843,158 - 29,850,569 (-)NCBICelera
Cytogenetic Map10q21NCBI
Thg1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540811,857,380 - 11,866,270 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540811,857,380 - 11,863,786 (+)NCBIChiLan1.0ChiLan1.0
THG1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24152,886,986 - 152,921,758 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15151,026,544 - 151,066,518 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05153,116,528 - 153,127,166 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15159,737,327 - 159,747,405 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5159,737,327 - 159,749,242 (+)Ensemblpanpan1.1panPan2
THG1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1452,548,481 - 52,587,582 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl452,549,741 - 52,561,754 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha452,439,674 - 52,478,767 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0452,983,177 - 53,022,284 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl452,984,143 - 53,085,752 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1452,810,671 - 52,849,772 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0452,916,953 - 52,956,106 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0453,434,716 - 53,473,821 (-)NCBIUU_Cfam_GSD_1.0
THG1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1665,602,641 - 65,610,592 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11665,602,637 - 65,610,619 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21671,454,638 - 71,462,777 (-)NCBISscrofa10.2Sscrofa10.2susScr3
THG1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12360,140,439 - 60,148,893 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2360,140,536 - 60,150,461 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603417,480,477 - 17,490,637 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Thg1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473331,730,882 - 31,739,377 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473331,732,247 - 31,739,150 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000014246   ⟹   ENSSTOP00000012762
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365155,461,363 - 5,468,517 (-)Ensembl
RefSeq Acc Id: XM_005325440   ⟹   XP_005325497
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213107,013,000 - 107,019,071 (-)NCBI
SpeTri2.0NW_0049365155,462,344 - 5,468,475 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021726479   ⟹   XP_021582154
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213107,013,000 - 107,018,729 (-)NCBI
SpeTri2.0NW_0049365155,462,347 - 5,467,012 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021726480   ⟹   XP_021582155
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213107,013,000 - 107,018,979 (-)NCBI
SpeTri2.0NW_0049365155,462,347 - 5,468,325 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040272494   ⟹   XP_040128428
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213107,013,000 - 107,018,726 (-)NCBI
RefSeq Acc Id: XM_040272495   ⟹   XP_040128429
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213107,013,000 - 107,018,724 (-)NCBI
RefSeq Acc Id: XM_040272496   ⟹   XP_040128430
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213107,013,000 - 107,018,733 (-)NCBI
RefSeq Acc Id: XP_005325497   ⟸   XM_005325440
- Peptide Label: isoform X1
- UniProtKB: I3MMJ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021582155   ⟸   XM_021726480
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021582154   ⟸   XM_021726479
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_040128430   ⟸   XM_040272496
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040128428   ⟸   XM_040272494
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040128429   ⟸   XM_040272495
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000012762   ⟸   ENSSTOT00000014246

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014243 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014246.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.3000 UniProtKB/TrEMBL
InterPro Thg1_C_dom UniProtKB/TrEMBL
  tRNAHis_GuaTrfase_cat UniProtKB/TrEMBL
  tRNAHis_GuaTrfase_Thg1 UniProtKB/TrEMBL
  tRNAHis_GuaTrfase_Thg1_sf UniProtKB/TrEMBL
NCBI Gene Thg1l ENTREZGENE
PANTHER PTHR12729 UniProtKB/TrEMBL
  TRNA(HIS) GUANYLYLTRANSFERASE-RELATED UniProtKB/TrEMBL
Pfam Thg1 UniProtKB/TrEMBL
  Thg1C UniProtKB/TrEMBL
PIRSF tRNAHis_guanylyltransferase UniProtKB/TrEMBL
UniProt I3MMJ6 ENTREZGENE, UniProtKB/TrEMBL