Actr1a (actin related protein 1A) - Rat Genome Database

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Gene: Actr1a (actin related protein 1A) Ictidomys tridecemlineatus
Analyze
Symbol: Actr1a
Name: actin related protein 1A
RGD ID: 12457876
Description: INVOLVED IN spermatogenesis (ortholog); PARTICIPATES IN mitochondria transport pathway; ASSOCIATED WITH colon cancer (ortholog); Down syndrome (ortholog); genetic disease (ortholog); FOUND IN centriole (ortholog); COPI-coated vesicle (ortholog); manchette (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: alpha-centractin; ARP1 actin related protein 1 homolog A; ARP1 actin-related protein 1 homolog A, centractin alpha
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721331,781,260 - 31,799,087 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366003,384,423 - 3,402,304 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366003,384,466 - 3,402,312 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Actr1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721331,781,260 - 31,799,087 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366003,384,423 - 3,402,304 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366003,384,466 - 3,402,312 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACTR1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810102,479,229 - 102,502,712 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10102,461,881 - 102,502,712 (-)EnsemblGRCh38hg38GRCh38
GRCh3710104,238,986 - 104,262,469 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610104,228,976 - 104,252,452 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410104,228,976 - 104,252,452NCBI
Celera1097,979,888 - 98,003,421 (-)NCBICelera
Cytogenetic Map10q24.32NCBI
HuRef1097,872,832 - 97,896,289 (-)NCBIHuRef
CHM1_110104,522,437 - 104,545,972 (-)NCBICHM1_1
T2T-CHM13v2.010103,364,208 - 103,387,699 (-)NCBIT2T-CHM13v2.0
Actr1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391946,365,252 - 46,384,180 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1946,365,250 - 46,384,187 (-)EnsemblGRCm39 Ensembl
GRCm381946,376,813 - 46,395,741 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1946,376,811 - 46,395,748 (-)EnsemblGRCm38mm10GRCm38
MGSCv371946,451,304 - 46,470,225 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361946,430,125 - 46,449,046 (-)NCBIMGSCv36mm8
Celera1947,139,989 - 47,159,305 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1938.84NCBI
Actr1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81255,179,241 - 255,199,009 (-)NCBIGRCr8
mRatBN7.21245,237,821 - 245,256,618 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,237,826 - 245,256,495 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1253,359,208 - 253,377,911 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01260,053,858 - 260,072,550 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01252,705,669 - 252,724,353 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01266,123,864 - 266,142,621 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1266,123,870 - 266,142,538 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01273,554,805 - 273,573,677 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41251,592,429 - 251,611,097 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11251,855,583 - 251,874,603 (-)NCBI
Celera1241,020,570 - 241,039,215 (-)NCBICelera
Cytogenetic Map1q54NCBI
Actr1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554857,926,744 - 7,944,648 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554857,926,744 - 7,944,648 (+)NCBIChiLan1.0ChiLan1.0
ACTR1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28114,366,764 - 114,390,285 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110114,372,086 - 114,395,607 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01099,082,765 - 99,106,305 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110102,547,695 - 102,570,766 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10102,547,695 - 102,570,766 (-)Ensemblpanpan1.1panPan2
ACTR1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12814,972,512 - 14,990,434 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2814,972,515 - 14,990,434 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2815,144,838 - 15,162,754 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02815,446,553 - 15,464,473 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2815,443,623 - 15,464,462 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12814,991,502 - 15,009,420 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02815,030,653 - 15,048,570 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02815,163,237 - 15,181,156 (-)NCBIUU_Cfam_GSD_1.0
ACTR1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14113,480,196 - 113,498,740 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114113,480,196 - 113,498,794 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214123,335,570 - 123,354,172 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACTR1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1995,507,685 - 95,531,015 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl995,506,675 - 95,530,984 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604856,615,155 - 56,638,590 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Actr1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248311,859,043 - 1,881,307 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248311,861,185 - 1,880,706 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000014437   ⟹   ENSSTOP00000012932
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366003,384,423 - 3,402,304 (+)Ensembl
RefSeq Acc Id: XM_005333619   ⟹   XP_005333676
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721331,781,260 - 31,799,087 (+)NCBI
SpeTri2.0NW_0049366003,384,466 - 3,402,312 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040273554   ⟹   XP_040129488
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721331,781,310 - 31,799,087 (+)NCBI
RefSeq Acc Id: XM_040273555   ⟹   XP_040129489
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721331,790,810 - 31,799,087 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005333676 (Get FASTA)   NCBI Sequence Viewer  
  XP_040129488 (Get FASTA)   NCBI Sequence Viewer  
  XP_040129489 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012932.2
GenBank Protein KAG3264174 (Get FASTA)   NCBI Sequence Viewer  
  KAG3264175 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005333676   ⟸   XM_005333619
- Peptide Label: isoform X1
- UniProtKB: I3MMX5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040129488   ⟸   XM_040273554
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040129489   ⟸   XM_040273555
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000012932   ⟸   ENSSTOT00000014437


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014434 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014437.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.40 UniProtKB/TrEMBL
InterPro Actin UniProtKB/TrEMBL
  Actin/actin-like_CS UniProtKB/TrEMBL
  Actin_CS UniProtKB/TrEMBL
  ATPase_NBD UniProtKB/TrEMBL
NCBI Gene Actr1a ENTREZGENE
PANTHER ALPHA-CENTRACTIN UniProtKB/TrEMBL
  PTHR11937 UniProtKB/TrEMBL
Pfam Actin UniProtKB/TrEMBL
PRINTS ACTIN UniProtKB/TrEMBL
PROSITE ACTINS_2 UniProtKB/TrEMBL
  ACTINS_ACT_LIKE UniProtKB/TrEMBL
SMART ACTIN UniProtKB/TrEMBL
Superfamily-SCOP SSF53067 UniProtKB/TrEMBL
UniProt I3MMX5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-15 Actr1a  actin related protein 1A    ARP1 actin related protein 1 homolog A  Symbol and/or name change 5135510 APPROVED
2017-05-09 Actr1a  ARP1 actin related protein 1 homolog A    ARP1 actin-related protein 1 homolog A, centractin alpha  Symbol and/or name change 5135510 APPROVED