Zfand5 (zinc finger AN1-type containing 5) - Rat Genome Database

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Gene: Zfand5 (zinc finger AN1-type containing 5) Ictidomys tridecemlineatus
Analyze
Symbol: Zfand5
Name: zinc finger AN1-type containing 5
RGD ID: 12451089
Description: ENCODES a protein that exhibits DNA binding (inferred); metal ion binding (inferred); zinc ion binding (inferred); INVOLVED IN face development (ortholog); fibroblast migration (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH genetic disease (ortholog); Prostatic Neoplasms (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AN1-type zinc finger protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947132,790,474 - 132,797,375 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365038,377,544 - 8,382,530 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Zfand5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947132,790,474 - 132,797,375 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365038,377,544 - 8,382,530 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFAND5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38972,351,413 - 72,365,208 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl972,351,413 - 72,365,235 (-)EnsemblGRCh38hg38GRCh38
GRCh37974,966,329 - 74,980,124 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36974,156,161 - 74,169,983 (-)NCBINCBI36Build 36hg18NCBI36
Build 34972,198,927 - 72,209,446NCBI
Celera945,539,096 - 45,552,933 (-)NCBICelera
Cytogenetic Map9q21.13NCBI
HuRef944,789,852 - 44,803,687 (-)NCBIHuRef
CHM1_1975,113,014 - 75,126,847 (-)NCBICHM1_1
T2T-CHM13v2.0984,502,257 - 84,516,065 (-)NCBIT2T-CHM13v2.0
Zfand5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391921,249,150 - 21,264,204 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1921,249,642 - 21,264,204 (+)EnsemblGRCm39 Ensembl
GRCm381921,271,786 - 21,286,840 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1921,272,278 - 21,286,840 (+)EnsemblGRCm38mm10GRCm38
MGSCv371921,346,768 - 21,356,779 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361921,339,375 - 21,349,386 (+)NCBIMGSCv36mm8
Celera1921,998,177 - 22,007,973 (+)NCBICelera
Cytogenetic Map19BNCBI
cM Map1914.32NCBI
Zfand5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81228,191,064 - 228,206,947 (+)NCBIGRCr8
mRatBN7.21218,765,735 - 218,780,391 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1218,766,614 - 218,775,843 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1227,210,471 - 227,220,107 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01234,147,044 - 234,156,680 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01226,965,063 - 226,974,699 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01238,842,506 - 238,854,030 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1238,843,338 - 238,852,566 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01246,131,037 - 246,141,413 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41224,442,733 - 224,448,701 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11224,599,098 - 224,612,452 (+)NCBI
Celera1216,025,336 - 216,031,304 (+)NCBICelera
Cytogenetic Map1q51NCBI
Zfand5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955434841,409 - 847,598 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955434841,410 - 847,598 (+)NCBIChiLan1.0ChiLan1.0
ZFAND5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21171,544,862 - 71,559,962 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1971,550,804 - 71,561,625 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0952,446,788 - 52,457,527 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1971,144,900 - 71,154,993 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl971,144,900 - 71,154,869 (-)Ensemblpanpan1.1panPan2
ZFAND5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1185,420,091 - 85,429,843 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl185,420,127 - 85,428,424 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha185,883,742 - 85,895,048 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0185,869,038 - 85,880,344 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl185,871,695 - 85,878,925 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1185,630,174 - 85,641,465 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0185,334,760 - 85,346,046 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0186,093,522 - 86,104,824 (+)NCBIUU_Cfam_GSD_1.0
ZFAND5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1225,703,200 - 225,714,365 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11225,703,027 - 225,714,522 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21252,229,611 - 252,241,057 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZFAND5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11283,403,552 - 83,414,572 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1283,401,111 - 83,414,591 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603871,824,141 - 71,835,426 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfand5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624736611,726 - 621,360 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005324105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005324105   ⟹   XP_005324162
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947132,790,474 - 132,797,375 (+)NCBI
SpeTri2.0NW_0049365038,377,544 - 8,382,530 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005324162 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010897.3
Reference Protein Sequences
RefSeq Acc Id: XP_005324162   ⟸   XM_005324105
- Sequence:
Protein Domains
A20-type   AN1-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012154 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012156.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.4770 UniProtKB/TrEMBL
  4.10.1110.10 UniProtKB/TrEMBL
InterPro AN1-like_Znf UniProtKB/TrEMBL
  Znf_A20 UniProtKB/TrEMBL
  Znf_AN1 UniProtKB/TrEMBL
NCBI Gene Zfand5 ENTREZGENE
PANTHER AN1-TYPE ZINC FINGER PROTEIN UniProtKB/TrEMBL
  AN1-TYPE ZINC FINGER PROTEIN 5 UniProtKB/TrEMBL
Pfam zf-A20 UniProtKB/TrEMBL
  zf-AN1 UniProtKB/TrEMBL
PROSITE ZF_A20 UniProtKB/TrEMBL
  ZF_AN1 UniProtKB/TrEMBL
SMART ZnF_A20 UniProtKB/TrEMBL
  ZnF_AN1 UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  SSF118310 UniProtKB/TrEMBL
UniProt I3MIN1_ICTTR UniProtKB/TrEMBL