Aknad1 (AKNA domain containing 1) - Rat Genome Database

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Gene: Aknad1 (AKNA domain containing 1) Ictidomys tridecemlineatus
Analyze
Symbol: Aknad1
Name: AKNA domain containing 1
RGD ID: 12442756
Description: ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 63 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505819,667,109 - 19,707,695 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936704406,678 - 441,791 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Aknad1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505819,667,109 - 19,707,695 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936704406,678 - 441,791 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AKNAD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381108,815,901 - 108,858,244 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1108,815,898 - 108,963,484 (-)EnsemblGRCh38hg38GRCh38
GRCh371109,358,523 - 109,400,866 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361109,160,046 - 109,201,239 (-)NCBINCBI36Build 36hg18NCBI36
Celera1107,628,098 - 107,669,293 (-)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1107,251,347 - 107,293,712 (-)NCBIHuRef
CHM1_11109,473,530 - 109,515,868 (-)NCBICHM1_1
T2T-CHM13v2.01108,849,226 - 108,891,563 (-)NCBIT2T-CHM13v2.0
Aknad1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393108,646,876 - 108,689,625 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3108,646,974 - 108,689,625 (+)EnsemblGRCm39 Ensembl
GRCm383108,739,559 - 108,782,309 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3108,739,658 - 108,782,309 (+)EnsemblGRCm38mm10GRCm38
MGSCv373108,542,576 - 108,585,227 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363108,872,449 - 108,903,357 (+)NCBIMGSCv36mm8
Celera3111,074,418 - 111,117,121 (+)NCBICelera
Cytogenetic Map3F3NCBI
cM Map347.64NCBI
Aknad1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82199,076,864 - 199,120,402 (+)NCBIGRCr8
mRatBN7.22196,385,149 - 196,432,319 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2196,393,535 - 196,432,309 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2204,036,325 - 204,075,397 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02201,918,322 - 201,956,595 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02196,735,296 - 196,773,574 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02211,541,800 - 211,585,332 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2211,546,560 - 211,585,332 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02231,019,447 - 231,058,488 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42204,346,348 - 204,375,822 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2189,041,275 - 189,080,001 (+)NCBICelera
Cytogenetic Map2q34NCBI
Aknad1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543512,275,079 - 12,314,424 (-)NCBIChiLan1.0ChiLan1.0
AKNAD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21118,429,133 - 118,491,854 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11117,589,209 - 117,650,379 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01111,190,595 - 111,229,774 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11110,358,725 - 110,400,257 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1110,358,734 - 110,400,257 (-)Ensemblpanpan1.1panPan2
AKNAD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1642,879,348 - 42,940,719 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl642,901,029 - 42,940,712 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha645,654,893 - 45,716,483 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0643,212,143 - 43,273,760 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl643,234,540 - 43,273,524 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1642,942,636 - 43,004,197 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0642,901,095 - 42,962,716 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0643,342,681 - 43,404,292 (+)NCBIUU_Cfam_GSD_1.0
AKNAD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.14111,195,277 - 111,229,474 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24121,670,951 - 121,722,414 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AKNAD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12024,733,809 - 24,767,891 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2024,738,275 - 24,767,789 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603833,575,719 - 33,612,134 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aknad1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247724,593,978 - 4,633,850 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040287452   ⟹   XP_040143386
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505819,667,109 - 19,707,695 (+)NCBI
RefSeq Acc Id: XM_040287453   ⟹   XP_040143387
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505819,667,109 - 19,707,695 (+)NCBI
RefSeq Acc Id: XM_040287454   ⟹   XP_040143388
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505819,667,110 - 19,707,695 (+)NCBI
RefSeq Acc Id: XM_040287456   ⟹   XP_040143390
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505819,667,110 - 19,707,229 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040143386 (Get FASTA)   NCBI Sequence Viewer  
  XP_040143387 (Get FASTA)   NCBI Sequence Viewer  
  XP_040143388 (Get FASTA)   NCBI Sequence Viewer  
  XP_040143390 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040143386   ⟸   XM_040287452
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040143387   ⟸   XM_040287453
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040143388   ⟸   XM_040287454
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040143390   ⟸   XM_040287456
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene Aknad1 ENTREZGENE