Slc35e1 (solute carrier family 35 member E1) - Rat Genome Database

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Gene: Slc35e1 (solute carrier family 35 member E1) Ictidomys tridecemlineatus
Analyze
Symbol: Slc35e1
Name: solute carrier family 35 member E1
RGD ID: 12441150
Description: ENCODES a protein that exhibits antiporter activity (inferred); phosphoenolpyruvate transmembrane transporter activity (inferred); INVOLVED IN phosphoenolpyruvate transmembrane import into Golgi lumen (inferred); FOUND IN endoplasmic reticulum (inferred); Golgi apparatus (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118204,514,425 - 204,528,452 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365964,063,489 - 4,077,581 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365964,063,511 - 4,077,591 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Slc35e1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118204,514,425 - 204,528,452 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365964,063,489 - 4,077,581 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365964,063,511 - 4,077,591 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC35E1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381916,549,837 - 16,572,415 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1916,549,831 - 16,572,415 (-)EnsemblGRCh38hg38GRCh38
GRCh371916,660,648 - 16,683,226 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361916,523,564 - 16,544,193 (-)NCBINCBI36Build 36hg18NCBI36
Build 341916,523,583 - 16,544,193NCBI
Celera1916,562,488 - 16,585,032 (-)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1916,229,235 - 16,251,624 (-)NCBIHuRef
CHM1_11916,660,133 - 16,682,679 (-)NCBICHM1_1
T2T-CHM13v2.01916,684,627 - 16,707,204 (-)NCBIT2T-CHM13v2.0
Slc35e1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39873,231,839 - 73,246,473 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl873,234,485 - 73,246,458 (-)EnsemblGRCm39 Ensembl
GRCm38872,477,995 - 72,492,614 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl872,480,641 - 72,492,614 (-)EnsemblGRCm38mm10GRCm38
MGSCv37875,001,894 - 75,016,513 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36875,410,672 - 75,421,351 (-)NCBIMGSCv36mm8
Celera876,822,563 - 76,837,191 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map835.08NCBI
Slc35e1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81617,384,980 - 17,398,227 (+)NCBIGRCr8
mRatBN7.21617,350,938 - 17,364,185 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1617,350,988 - 17,363,268 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1617,419,636 - 17,431,803 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01618,550,654 - 18,562,940 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01617,472,556 - 17,484,723 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01619,052,321 - 19,064,596 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,051,965 - 19,062,515 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01618,915,079 - 18,927,347 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41617,769,201 - 17,781,444 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1617,570,752 - 17,583,037 (+)NCBICelera
Cytogenetic Map16p14NCBI
Slc35e1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555241,204,169 - 1,212,819 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555241,204,227 - 1,212,833 (+)NCBIChiLan1.0ChiLan1.0
SLC35E1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22021,416,141 - 21,444,702 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11920,430,524 - 20,450,775 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01916,041,019 - 16,062,568 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11917,019,504 - 17,040,738 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1917,019,504 - 17,040,744 (-)Ensemblpanpan1.1panPan2
SLC35E1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,979,354 - 45,999,255 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,979,369 - 45,996,469 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2045,892,801 - 45,912,650 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02046,466,278 - 46,486,158 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2046,466,184 - 46,486,156 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12045,701,487 - 45,721,350 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02046,112,243 - 46,132,093 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02046,387,398 - 46,407,427 (+)NCBIUU_Cfam_GSD_1.0
SLC35E1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl261,037,861 - 61,058,093 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1261,037,825 - 61,058,096 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2260,624,360 - 60,642,439 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC35E1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1615,062,323 - 15,079,558 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660744,390,843 - 4,408,404 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc35e1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624908914,424 - 922,422 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624908914,214 - 923,293 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005333033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000012100   ⟹   ENSSTOP00000010850
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365964,063,489 - 4,077,581 (+)Ensembl
RefSeq Acc Id: XM_005333033   ⟹   XP_005333090
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118204,514,425 - 204,528,452 (+)NCBI
SpeTri2.0NW_0049365964,063,511 - 4,077,591 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005333090 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010850.3
GenBank Protein KAG3279987 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005333090   ⟸   XM_005333033
- UniProtKB: I3MIJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000010850   ⟸   ENSSTOT00000012100
Protein Domains
Sugar phosphate transporter


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012106 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012100.3 UniProtKB/TrEMBL
InterPro Sugar_P_trans_dom UniProtKB/TrEMBL
NCBI Gene Slc35e1 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 35 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 35 MEMBER E1 UniProtKB/TrEMBL
Pfam TPT UniProtKB/TrEMBL
Superfamily-SCOP Multidrug resistance efflux transporter EmrE UniProtKB/TrEMBL
UniProt I3MIJ7 ENTREZGENE, UniProtKB/TrEMBL