Cog5 (component of oligomeric golgi complex 5) - Rat Genome Database

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Gene: Cog5 (component of oligomeric golgi complex 5) Ictidomys tridecemlineatus
Analyze
Symbol: Cog5
Name: component of oligomeric golgi complex 5
RGD ID: 12439013
Description: INVOLVED IN inter-Golgi cisterna vesicle-mediated transport (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation type IIi (ortholog); FOUND IN Golgi apparatus (inferred); Golgi transport complex (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: conserved oligomeric Golgi complex subunit 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511855,431,054 - 55,731,445 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647916,554,569 - 16,858,500 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647916,554,816 - 16,855,211 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cog5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511855,431,054 - 55,731,445 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647916,554,569 - 16,858,500 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647916,554,816 - 16,855,211 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COG5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387107,201,372 - 107,563,920 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7107,201,372 - 107,564,261 (-)EnsemblGRCh38hg38GRCh38
GRCh377106,841,817 - 107,204,365 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367106,630,227 - 106,991,721 (-)NCBINCBI36Build 36hg18NCBI36
Build 347106,436,941 - 106,798,436NCBI
Celera7101,647,486 - 102,010,231 (-)NCBICelera
Cytogenetic Map7q22.3NCBI
HuRef7101,202,742 - 101,565,584 (-)NCBIHuRef
CHM1_17106,776,168 - 107,138,910 (-)NCBICHM1_1
T2T-CHM13v2.07108,517,426 - 108,879,966 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27106,203,276 - 106,566,048 (-)NCBI
Cog5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391231,704,848 - 31,987,629 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1231,704,868 - 31,987,629 (+)EnsemblGRCm39 Ensembl
GRCm381231,654,819 - 31,937,630 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1231,654,869 - 31,937,630 (+)EnsemblGRCm38mm10GRCm38
MGSCv371232,339,734 - 32,622,495 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1233,104,592 - 33,391,997 (+)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1213.68NCBI
Cog5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8653,969,967 - 54,267,869 (+)NCBIGRCr8
mRatBN7.2648,242,470 - 48,545,185 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl648,242,482 - 48,529,009 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx648,549,795 - 48,837,174 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0648,864,712 - 49,152,099 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0648,304,998 - 48,597,787 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0650,953,868 - 51,230,860 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl650,954,631 - 51,230,701 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0659,720,284 - 59,901,509 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4649,523,386 - 50,200,662 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera647,444,615 - 47,730,860 (+)NCBICelera
Cytogenetic Map6q16NCBI
Cog5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541011,653,058 - 11,920,718 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541011,651,587 - 11,920,866 (-)NCBIChiLan1.0ChiLan1.0
COG5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26144,044,403 - 144,407,030 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17192,314,371 - 192,676,998 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0799,180,197 - 99,543,437 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17111,905,285 - 112,267,038 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7111,934,557 - 112,266,513 (-)Ensemblpanpan1.1panPan2
COG5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11813,039,889 - 13,338,958 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1813,039,889 - 13,338,538 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1812,684,143 - 12,988,210 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01813,311,561 - 13,609,473 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1813,311,105 - 13,609,468 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11813,127,949 - 13,425,827 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01813,048,114 - 13,346,001 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01813,325,594 - 13,623,734 (+)NCBIUU_Cfam_GSD_1.0
COG5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9106,990,573 - 107,273,607 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19106,993,771 - 107,273,889 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29117,856,505 - 118,030,812 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COG5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12176,120,742 - 76,485,587 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2176,122,849 - 76,479,500 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604227,378,928 - 27,735,810 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cog5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473922,188,532 - 22,504,057 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473922,188,504 - 22,504,616 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005319450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000033522   ⟹   ENSSTOP00000031337
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647916,554,569 - 16,858,500 (+)Ensembl
RefSeq Acc Id: XM_005319450   ⟹   XP_005319507
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511855,431,054 - 55,731,445 (+)NCBI
SpeTri2.0NW_00493647916,554,816 - 16,855,211 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005319507 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000031337.1
GenBank Protein KAG3277799 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005319507   ⟸   XM_005319450
- UniProtKB: A0A287DCP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000031337   ⟸   ENSSTOT00000033522
Protein Domains
Conserved oligomeric Golgi complex subunit   Conserved oligomeric Golgi complex subunit 5 N-


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000034441 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000033522.1 UniProtKB/TrEMBL
InterPro Cog5 UniProtKB/TrEMBL
  COG5_helical UniProtKB/TrEMBL
  COG5_N UniProtKB/TrEMBL
NCBI Gene Cog5 ENTREZGENE
PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 5 UniProtKB/TrEMBL
  PTHR13228 UniProtKB/TrEMBL
Pfam COG5 UniProtKB/TrEMBL
  COG5_C UniProtKB/TrEMBL
UniProt A0A287DCP3 ENTREZGENE, UniProtKB/TrEMBL