HNRNPA1 (heterogeneous nuclear ribonucleoprotein A1) - Rat Genome Database

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Gene: HNRNPA1 (heterogeneous nuclear ribonucleoprotein A1) Canis lupus familiaris
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Symbol: HNRNPA1
Name: heterogeneous nuclear ribonucleoprotein A1
RGD ID: 12435524
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA/DNA annealing activity (ortholog); G-rich strand telomeric DNA binding (ortholog); INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); cellular response to epidermal growth factor stimulus (ortholog); cellular response to glucose starvation (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis type 20 (ortholog); Animal Disease Models (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleoplasmic periphery of the nuclear pore complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1271,013,459 - 1,020,083 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl271,015,868 - 1,019,891 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2745,235,341 - 45,240,080 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0271,012,273 - 1,017,012 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl271,012,271 - 1,016,841 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1271,031,242 - 1,035,976 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,010,967 - 1,017,580 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02745,639,146 - 45,643,882 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:37756605  


Genomics

Comparative Map Data
HNRNPA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1271,013,459 - 1,020,083 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl271,015,868 - 1,019,891 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2745,235,341 - 45,240,080 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0271,012,273 - 1,017,012 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl271,012,271 - 1,016,841 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1271,031,242 - 1,035,976 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,010,967 - 1,017,580 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02745,639,146 - 45,643,882 (+)NCBIUU_Cfam_GSD_1.0
HNRNPA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381254,280,726 - 54,287,087 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1254,280,193 - 54,287,088 (+)EnsemblGRCh38hg38GRCh38
GRCh371254,674,510 - 54,680,871 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361252,960,755 - 52,965,297 (+)NCBINCBI36Build 36hg18NCBI36
Build 341252,960,754 - 52,965,297NCBI
Celera1254,326,467 - 54,331,009 (+)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1251,713,759 - 51,718,301 (+)NCBIHuRef
CHM1_11254,641,226 - 54,645,768 (+)NCBICHM1_1
T2T-CHM13v2.01254,247,303 - 54,253,664 (+)NCBIT2T-CHM13v2.0
Hnrnpa1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915103,148,840 - 103,155,119 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15103,148,859 - 103,155,119 (+)EnsemblGRCm39 Ensembl
GRCm3815103,239,943 - 103,246,698 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15103,240,432 - 103,246,692 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715103,070,863 - 103,075,386 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615103,068,466 - 103,072,989 (+)NCBIMGSCv36mm8
Celera15105,402,021 - 105,406,544 (+)NCBICelera
Cytogenetic Map15F3NCBI
cM Map1558.58NCBI
Hnrnpa1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87136,253,633 - 136,260,085 (+)NCBIGRCr8
mRatBN7.27134,375,318 - 134,381,610 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7134,375,150 - 134,381,609 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7136,130,862 - 136,135,162 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07138,360,240 - 138,364,540 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07138,346,358 - 138,350,660 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07144,865,302 - 144,871,592 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7144,865,608 - 144,871,585 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07142,647,071 - 142,652,967 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47142,150,229 - 142,154,520 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17142,230,417 - 142,234,709 (+)NCBI
Celera7130,801,278 - 130,805,569 (+)NCBICelera
Cytogenetic Map7q36NCBI
Hnrnpa1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554581,530,163 - 1,536,874 (+)NCBIChiLan1.0ChiLan1.0
HNRNPA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21039,884,192 - 39,891,112 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11239,880,960 - 39,887,881 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01234,456,900 - 34,463,317 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11235,182,164 - 35,188,651 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1235,184,943 - 35,188,443 (-)Ensemblpanpan1.1panPan2
Hnrnpa1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494561,677,106 - 61,683,541 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493651211,481,017 - 11,487,737 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNRNPA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl519,485,096 - 19,491,417 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1519,485,033 - 19,491,418 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2520,329,539 - 20,334,145 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HNRNPA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11150,397,173 - 50,403,192 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1150,396,888 - 50,400,802 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037195,638,486 - 195,645,432 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hnrnpa1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249042,314,249 - 2,318,791 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249042,314,197 - 2,320,900 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HNRNPA1
106 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000010627   ⟹   ENSCAFP00000009850
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl271,015,868 - 1,019,891 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000010628   ⟹   ENSCAFP00000009851
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl271,015,956 - 1,019,891 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000087714   ⟹   ENSCAFP00000043543
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl271,015,868 - 1,019,891 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845031335   ⟹   ENSCAFP00845024531
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl271,012,271 - 1,016,841 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845031413   ⟹   ENSCAFP00845024599
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl271,012,271 - 1,016,841 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845031478   ⟹   ENSCAFP00845024651
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl271,012,271 - 1,016,841 (-)Ensembl
RefSeq Acc Id: XM_022411250   ⟹   XP_022266958
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1271,013,459 - 1,020,083 (-)NCBI
Dog10K_Boxer_Tasha2745,235,341 - 45,240,080 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038438001   ⟹   XP_038293929
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0271,012,273 - 1,017,012 (-)NCBI
RefSeq Acc Id: XM_038512707   ⟹   XP_038368635
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1271,031,242 - 1,035,976 (-)NCBI
RefSeq Acc Id: XM_038577848   ⟹   XP_038433776
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02745,639,146 - 45,643,882 (+)NCBI
RefSeq Acc Id: XM_038640454   ⟹   XP_038496382
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0271,012,852 - 1,017,580 (-)NCBI
RefSeq Acc Id: XR_005413486
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0271,010,967 - 1,017,580 (-)NCBI
RefSeq Acc Id: XP_022266958   ⟸   XM_022411250
- UniProtKB: A0A8C0PM43 (UniProtKB/TrEMBL),   A0A8I3P181 (UniProtKB/TrEMBL),   A0A8C0NAJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000043543   ⟸   ENSCAFT00000087714
RefSeq Acc Id: ENSCAFP00000009850   ⟸   ENSCAFT00000010627
RefSeq Acc Id: ENSCAFP00000009851   ⟸   ENSCAFT00000010628
RefSeq Acc Id: XP_038368635   ⟸   XM_038512707
RefSeq Acc Id: XP_038496382   ⟸   XM_038640454
RefSeq Acc Id: XP_038293929   ⟸   XM_038438001
- UniProtKB: A0A8C0PM43 (UniProtKB/TrEMBL),   A0A8I3P181 (UniProtKB/TrEMBL),   A0A8C0NAJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433776   ⟸   XM_038577848
- UniProtKB: A0A8C0NAJ1 (UniProtKB/TrEMBL),   A0A8C0PM43 (UniProtKB/TrEMBL),   A0A8I3P181 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845024531   ⟸   ENSCAFT00845031335
RefSeq Acc Id: ENSCAFP00845024599   ⟸   ENSCAFT00845031413
RefSeq Acc Id: ENSCAFP00845024651   ⟸   ENSCAFT00845031478
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006580 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030014067 UniProtKB/TrEMBL
  ENSCAFG00030025950 UniProtKB/TrEMBL
  ENSCAFG00845017656 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000010627.6 UniProtKB/TrEMBL
  ENSCAFT00000010628.5 UniProtKB/TrEMBL
  ENSCAFT00000087714.2 UniProtKB/TrEMBL
  ENSCAFT00030026034.1 UniProtKB/TrEMBL
  ENSCAFT00030047927.1 UniProtKB/TrEMBL
  ENSCAFT00030047932.1 UniProtKB/TrEMBL
  ENSCAFT00030047935.1 UniProtKB/TrEMBL
  ENSCAFT00845031335 ENTREZGENE
  ENSCAFT00845031335.1 UniProtKB/TrEMBL
  ENSCAFT00845031413.1 UniProtKB/TrEMBL
  ENSCAFT00845031478.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro HnRNPA1 UniProtKB/TrEMBL
  hnRNPA1/3_RRM2 UniProtKB/TrEMBL
  hnRNPA1_RRM1 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene HNRNPA1 ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1-RELATED UniProtKB/TrEMBL
  HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN UniProtKB/TrEMBL
Pfam HnRNPA1 UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8C0NAJ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PJE8_CANLF UniProtKB/TrEMBL
  A0A8C0PM43 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PYQ2_CANLF UniProtKB/TrEMBL
  A0A8I3P181 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P1F5_CANLF UniProtKB/TrEMBL
  A0A8I3S025_CANLF UniProtKB/TrEMBL