MRPL55 (mitochondrial ribosomal protein L55) - Rat Genome Database

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Gene: MRPL55 (mitochondrial ribosomal protein L55) Canis lupus familiaris
Analyze
Symbol: MRPL55
Name: mitochondrial ribosomal protein L55
RGD ID: 12431693
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); multiple mitochondrial dysfunctions syndrome 3 (ortholog); parathyroid carcinoma (ortholog); FOUND IN mitochondrial large ribosomal subunit (inferred); mitochondrion (inferred); synapse (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 39S ribosomal protein L55, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.114826,731 - 830,107 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl14826,726 - 830,107 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha14321,627 - 324,914 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.014547,149 - 550,437 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl14547,182 - 550,435 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.114737,958 - 741,246 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.014518,782 - 522,069 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.014504,671 - 507,961 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MRPL55
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.114826,731 - 830,107 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl14826,726 - 830,107 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha14321,627 - 324,914 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.014547,149 - 550,437 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl14547,182 - 550,435 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.114737,958 - 741,246 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.014518,782 - 522,069 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.014504,671 - 507,961 (+)NCBIUU_Cfam_GSD_1.0
MRPL55
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381228,106,685 - 228,109,299 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1228,106,679 - 228,109,312 (-)EnsemblGRCh38hg38GRCh38
GRCh371228,294,386 - 228,297,000 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361226,361,003 - 226,363,627 (-)NCBINCBI36Build 36hg18NCBI36
Celera1201,484,612 - 201,487,245 (-)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1198,809,501 - 198,812,134 (-)NCBIHuRef
CHM1_11229,566,725 - 229,569,358 (-)NCBICHM1_1
T2T-CHM13v2.01227,295,671 - 227,315,175 (-)NCBIT2T-CHM13v2.0
Mrpl55
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,093,312 - 59,096,964 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1159,093,312 - 59,096,960 (+)EnsemblGRCm39 Ensembl
GRCm381159,202,486 - 59,206,138 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,202,486 - 59,206,134 (+)EnsemblGRCm38mm10GRCm38
MGSCv371159,016,019 - 59,019,504 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361159,018,712 - 59,022,197 (+)NCBIMGSCv36mm8
Celera1163,967,585 - 63,971,075 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1137.05NCBI
Mrpl55
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81044,488,252 - 44,491,401 (+)NCBIGRCr8
mRatBN7.21043,988,676 - 43,991,841 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1043,988,683 - 43,991,841 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1048,682,503 - 48,685,658 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01048,172,861 - 48,176,016 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01043,676,458 - 43,679,613 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01045,552,794 - 45,555,943 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1045,552,795 - 45,555,943 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01045,308,861 - 45,312,028 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,506,262 - 45,509,410 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11045,519,887 - 45,522,767 (+)NCBI
Celera1043,251,943 - 43,255,091 (+)NCBICelera
Cytogenetic Map10q22NCBI
Mrpl55
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955581312,256 - 314,138 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955581312,256 - 314,138 (+)NCBIChiLan1.0ChiLan1.0
MRPL55
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2121,497,118 - 21,499,779 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1121,435,362 - 21,437,964 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01203,508,861 - 203,511,486 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11208,720,030 - 208,722,666 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1208,720,030 - 208,722,668 (-)Ensemblpanpan1.1panPan2
Mrpl55
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721387,766,963 - 87,770,562 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936864108,645 - 111,838 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL55
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl251,243,294 - 51,247,594 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1251,243,257 - 51,247,626 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2278,534,029 - 78,535,135 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MRPL55
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1251,618,831 - 1,621,460 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl251,619,917 - 1,621,385 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660551,500,040 - 1,502,647 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrpl55
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624937878,596 - 881,003 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624937878,596 - 881,098 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MRPL55
66 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005628353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005628354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038494146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038494147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038494148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038556443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038556444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038556445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038620373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038620374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038620375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038686061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038686062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038686063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_843940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000038029   ⟹   ENSCAFP00000033690
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl14826,726 - 830,105 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000080723   ⟹   ENSCAFP00000059692
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl14827,356 - 830,107 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845013784   ⟹   ENSCAFP00845010696
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl14547,182 - 550,435 (+)Ensembl
RefSeq Acc Id: XM_005628353   ⟹   XP_005628410
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.114826,736 - 830,107 (+)NCBI
Dog10K_Boxer_Tasha14321,627 - 324,884 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005628354   ⟹   XP_005628411
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.114826,731 - 830,107 (+)NCBI
Dog10K_Boxer_Tasha14321,627 - 324,876 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038494146   ⟹   XP_038350074
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.114737,958 - 741,246 (+)NCBI
RefSeq Acc Id: XM_038494147   ⟹   XP_038350075
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.114737,986 - 741,246 (+)NCBI
RefSeq Acc Id: XM_038494148   ⟹   XP_038350076
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.114737,996 - 741,246 (+)NCBI
RefSeq Acc Id: XM_038556443   ⟹   XP_038412371
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.014504,671 - 507,961 (+)NCBI
RefSeq Acc Id: XM_038556444   ⟹   XP_038412372
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.014504,699 - 507,961 (+)NCBI
RefSeq Acc Id: XM_038556445   ⟹   XP_038412373
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.014504,709 - 507,961 (+)NCBI
RefSeq Acc Id: XM_038620373   ⟹   XP_038476301
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.014518,782 - 522,069 (+)NCBI
RefSeq Acc Id: XM_038620374   ⟹   XP_038476302
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.014518,810 - 522,069 (+)NCBI
RefSeq Acc Id: XM_038620375   ⟹   XP_038476303
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.014518,820 - 522,069 (+)NCBI
RefSeq Acc Id: XM_038686061   ⟹   XP_038541989
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.014547,149 - 550,437 (+)NCBI
RefSeq Acc Id: XM_038686062   ⟹   XP_038541990
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.014547,178 - 550,437 (+)NCBI
RefSeq Acc Id: XM_038686063   ⟹   XP_038541991
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.014547,187 - 550,437 (+)NCBI
RefSeq Acc Id: XM_843940   ⟹   XP_849033
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.114826,732 - 830,107 (+)NCBI
Dog10K_Boxer_Tasha14321,627 - 324,914 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_849033   ⟸   XM_843940
- UniProtKB: A0A8C0JXA7 (UniProtKB/TrEMBL),   A0A8C0QMV5 (UniProtKB/TrEMBL),   A0A8I3N4V2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005628410   ⟸   XM_005628353
- UniProtKB: A0A8C0JXA7 (UniProtKB/TrEMBL),   A0A8C0QMV5 (UniProtKB/TrEMBL),   A0A8I3N4V2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005628411   ⟸   XM_005628354
- UniProtKB: A0A8C0JXA7 (UniProtKB/TrEMBL),   A0A8C0QMV5 (UniProtKB/TrEMBL),   A0A8I3N4V2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000033690   ⟸   ENSCAFT00000038029
RefSeq Acc Id: ENSCAFP00000059692   ⟸   ENSCAFT00000080723
RefSeq Acc Id: XP_038350074   ⟸   XM_038494146
RefSeq Acc Id: XP_038350075   ⟸   XM_038494147
RefSeq Acc Id: XP_038350076   ⟸   XM_038494148
RefSeq Acc Id: XP_038476301   ⟸   XM_038620373
RefSeq Acc Id: XP_038476302   ⟸   XM_038620374
RefSeq Acc Id: XP_038476303   ⟸   XM_038620375
RefSeq Acc Id: XP_038541989   ⟸   XM_038686061
- UniProtKB: A0A8C0JXA7 (UniProtKB/TrEMBL),   A0A8C0QMV5 (UniProtKB/TrEMBL),   A0A8I3N4V2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038541990   ⟸   XM_038686062
- UniProtKB: A0A8C0JXA7 (UniProtKB/TrEMBL),   A0A8C0QMV5 (UniProtKB/TrEMBL),   A0A8I3N4V2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038541991   ⟸   XM_038686063
- UniProtKB: A0A8C0JXA7 (UniProtKB/TrEMBL),   A0A8C0QMV5 (UniProtKB/TrEMBL),   A0A8I3N4V2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038412371   ⟸   XM_038556443
- UniProtKB: A0A8C0JXA7 (UniProtKB/TrEMBL),   A0A8C0QMV5 (UniProtKB/TrEMBL),   A0A8I3N4V2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038412372   ⟸   XM_038556444
- UniProtKB: A0A8C0JXA7 (UniProtKB/TrEMBL),   A0A8C0QMV5 (UniProtKB/TrEMBL),   A0A8I3N4V2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038412373   ⟸   XM_038556445
- UniProtKB: A0A8C0JXA7 (UniProtKB/TrEMBL),   A0A8C0QMV5 (UniProtKB/TrEMBL),   A0A8I3N4V2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845010696   ⟸   ENSCAFT00845013784


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000001176 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030013701 UniProtKB/TrEMBL
  ENSCAFG00040008699 UniProtKB/TrEMBL
  ENSCAFG00845007834 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000038029.4 UniProtKB/TrEMBL
  ENSCAFT00030025349.1 UniProtKB/TrEMBL
  ENSCAFT00040016211.1 UniProtKB/TrEMBL
  ENSCAFT00845013784 ENTREZGENE
  ENSCAFT00845013784.1 UniProtKB/TrEMBL
Gene3D-CATH 6.20.130.20 UniProtKB/TrEMBL
InterPro Ribosomal_L55_mit UniProtKB/TrEMBL
  Ribosomal_L55_sf UniProtKB/TrEMBL
KEGG Report cfa:607317 UniProtKB/TrEMBL
NCBI Gene MRPL55 ENTREZGENE
PANTHER 39S RIBOSOMAL PROTEIN L55, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR34095 UniProtKB/TrEMBL
Pfam Mitoc_L55 UniProtKB/TrEMBL
UniProt A0A8C0JXA7 ENTREZGENE
  A0A8C0QMV5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N4V2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:54787 ENTREZGENE