SCARB2 (scavenger receptor class B member 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: SCARB2 (scavenger receptor class B member 2) Canis lupus familiaris
Analyze
Symbol: SCARB2
Name: scavenger receptor class B member 2
RGD ID: 12426738
Description: ENCODES a protein that exhibits cargo receptor activity (inferred); cholesterol binding (inferred); enzyme binding (inferred); INVOLVED IN endosome to plasma membrane protein transport (ortholog); positive regulation of neuron projection development (ortholog); sensory perception of sound (ortholog); ASSOCIATED WITH benign epilepsy with centrotemporal spikes (ortholog); COVID-19 (ortholog); epilepsy (ortholog); FOUND IN cytoplasm (inferred); endocytic vesicle membrane (inferred); lysosomal lumen (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lysosome membrane protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.132788,117 - 865,496 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl32790,379 - 865,502 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3241,016,853 - 41,094,397 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.032814,945 - 891,722 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl32814,948 - 891,728 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.132812,765 - 889,655 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.032767,039 - 843,700 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03239,325,616 - 39,402,476 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SCARB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.132788,117 - 865,496 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl32790,379 - 865,502 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3241,016,853 - 41,094,397 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.032814,945 - 891,722 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl32814,948 - 891,728 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.132812,765 - 889,655 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.032767,039 - 843,700 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03239,325,616 - 39,402,476 (+)NCBIUU_Cfam_GSD_1.0
SCARB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38476,158,737 - 76,234,532 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl476,158,737 - 76,234,536 (-)EnsemblGRCh38hg38GRCh38
GRCh37477,079,890 - 77,134,977 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36477,298,918 - 77,354,059 (-)NCBINCBI36Build 36hg18NCBI36
Build 34477,437,072 - 77,492,214NCBI
Celera474,380,030 - 74,435,161 (-)NCBICelera
Cytogenetic Map4q21.1NCBI
HuRef472,831,916 - 72,887,070 (-)NCBIHuRef
CHM1_1477,056,276 - 77,111,407 (-)NCBICHM1_1
T2T-CHM13v2.0479,499,409 - 79,554,492 (-)NCBIT2T-CHM13v2.0
Scarb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39592,589,170 - 92,653,516 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl592,589,173 - 92,654,692 (-)EnsemblGRCm39 Ensembl
GRCm38592,441,311 - 92,505,657 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl592,441,314 - 92,506,833 (-)EnsemblGRCm38mm10GRCm38
MGSCv37592,872,899 - 92,934,634 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36593,519,073 - 93,580,808 (-)NCBIMGSCv36mm8
Celera590,592,338 - 90,656,687 (-)NCBICelera
Cytogenetic Map5E2NCBI
cM Map546.82NCBI
Scarb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81415,842,583 - 15,894,123 (+)NCBIGRCr8
mRatBN7.21415,558,271 - 15,609,813 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1415,558,236 - 15,609,813 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1415,566,223 - 15,618,045 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01416,885,066 - 16,936,897 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01415,580,484 - 15,632,314 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01417,064,173 - 17,115,620 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1417,064,353 - 17,115,963 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01416,980,270 - 17,031,712 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41417,119,366 - 17,170,850 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11417,119,365 - 17,170,850 (+)NCBI
Celera1414,952,893 - 15,004,293 (+)NCBICelera
Cytogenetic Map14p22NCBI
Scarb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955433884,740 - 962,932 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955433884,740 - 962,932 (-)NCBIChiLan1.0ChiLan1.0
SCARB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2353,859,642 - 53,914,850 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1454,049,355 - 54,104,570 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0447,992,589 - 48,047,528 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1453,830,488 - 53,886,065 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl453,830,488 - 53,886,059 (+)Ensemblpanpan1.1panPan2
Scarb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528511,281,403 - 11,339,761 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936676170,010 - 225,457 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936676167,482 - 225,827 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCARB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl871,838,397 - 71,940,607 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1871,838,395 - 71,910,461 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2876,034,114 - 76,105,880 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCARB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1724,658,734 - 24,714,631 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl724,658,211 - 24,714,597 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660373,007,021 - 3,062,819 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scarb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475714,709,120 - 14,795,243 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475714,709,120 - 14,795,039 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SCARB2
1125 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 10 6
Low 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005639077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022413552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022413553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022413554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038518281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038518282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038518283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038518284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038582402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038582403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038582404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038582405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038646204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038646205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038646206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038646207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000013659   ⟹   ENSCAFP00000012634
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl32790,575 - 865,502 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000062452   ⟹   ENSCAFP00000048195
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl32790,575 - 865,502 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000075743   ⟹   ENSCAFP00000066168
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl32790,379 - 865,502 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000083483   ⟹   ENSCAFP00000047634
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl32790,575 - 865,502 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053223   ⟹   ENSCAFP00845041791
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl32814,948 - 891,728 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053235   ⟹   ENSCAFP00845041803
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl32814,948 - 891,728 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053245   ⟹   ENSCAFP00845041811
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl32814,948 - 891,728 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053251   ⟹   ENSCAFP00845041816
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl32814,964 - 891,109 (-)Ensembl
RefSeq Acc Id: XM_005639077   ⟹   XP_005639134
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.132788,117 - 865,496 (-)NCBI
Dog10K_Boxer_Tasha3241,016,853 - 41,094,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022413552   ⟹   XP_022269260
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.132788,117 - 865,496 (-)NCBI
Dog10K_Boxer_Tasha3241,016,853 - 41,094,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022413553   ⟹   XP_022269261
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.132788,117 - 865,157 (-)NCBI
Dog10K_Boxer_Tasha3241,017,348 - 41,094,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022413554   ⟹   XP_022269262
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.132788,117 - 830,562 (-)NCBI
Dog10K_Boxer_Tasha3241,051,932 - 41,094,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038443858   ⟹   XP_038299786
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.032814,945 - 891,722 (-)NCBI
RefSeq Acc Id: XM_038443859   ⟹   XP_038299787
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.032814,945 - 891,722 (-)NCBI
RefSeq Acc Id: XM_038443860   ⟹   XP_038299788
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.032814,945 - 891,225 (-)NCBI
RefSeq Acc Id: XM_038443861   ⟹   XP_038299789
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.032814,945 - 856,919 (-)NCBI
RefSeq Acc Id: XM_038518281   ⟹   XP_038374209
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.132812,765 - 889,655 (-)NCBI
RefSeq Acc Id: XM_038518282   ⟹   XP_038374210
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.132812,765 - 889,655 (-)NCBI
RefSeq Acc Id: XM_038518283   ⟹   XP_038374211
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.132812,765 - 889,158 (-)NCBI
RefSeq Acc Id: XM_038518284   ⟹   XP_038374212
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.132812,765 - 854,997 (-)NCBI
RefSeq Acc Id: XM_038582402   ⟹   XP_038438330
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03239,325,616 - 39,402,476 (+)NCBI
RefSeq Acc Id: XM_038582403   ⟹   XP_038438331
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03239,325,616 - 39,402,476 (+)NCBI
RefSeq Acc Id: XM_038582404   ⟹   XP_038438332
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03239,326,111 - 39,402,476 (+)NCBI
RefSeq Acc Id: XM_038582405   ⟹   XP_038438333
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03239,360,299 - 39,402,476 (+)NCBI
RefSeq Acc Id: XM_038646204   ⟹   XP_038502132
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.032767,039 - 843,700 (-)NCBI
RefSeq Acc Id: XM_038646205   ⟹   XP_038502133
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.032767,039 - 843,700 (-)NCBI
RefSeq Acc Id: XM_038646206   ⟹   XP_038502134
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.032767,039 - 843,197 (-)NCBI
RefSeq Acc Id: XM_038646207   ⟹   XP_038502135
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.032767,039 - 809,024 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005639134 (Get FASTA)   NCBI Sequence Viewer  
  XP_022269260 (Get FASTA)   NCBI Sequence Viewer  
  XP_022269261 (Get FASTA)   NCBI Sequence Viewer  
  XP_022269262 (Get FASTA)   NCBI Sequence Viewer  
  XP_038299786 (Get FASTA)   NCBI Sequence Viewer  
  XP_038299787 (Get FASTA)   NCBI Sequence Viewer  
  XP_038299788 (Get FASTA)   NCBI Sequence Viewer  
  XP_038299789 (Get FASTA)   NCBI Sequence Viewer  
  XP_038374209 (Get FASTA)   NCBI Sequence Viewer  
  XP_038374210 (Get FASTA)   NCBI Sequence Viewer  
  XP_038374211 (Get FASTA)   NCBI Sequence Viewer  
  XP_038374212 (Get FASTA)   NCBI Sequence Viewer  
  XP_038438330 (Get FASTA)   NCBI Sequence Viewer  
  XP_038438331 (Get FASTA)   NCBI Sequence Viewer  
  XP_038438332 (Get FASTA)   NCBI Sequence Viewer  
  XP_038438333 (Get FASTA)   NCBI Sequence Viewer  
  XP_038502132 (Get FASTA)   NCBI Sequence Viewer  
  XP_038502133 (Get FASTA)   NCBI Sequence Viewer  
  XP_038502134 (Get FASTA)   NCBI Sequence Viewer  
  XP_038502135 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000012634.3
  ENSCAFP00000047634.1
  ENSCAFP00000048195.1
  ENSCAFP00000072146.1
  ENSCAFP00030034320.1
  ENSCAFP00030034380.1
  ENSCAFP00030034425.1
  ENSCAFP00030034461.1
  ENSCAFP00040038849.1
  ENSCAFP00040038915.1
  ENSCAFP00040038942.1
  ENSCAFP00040038951.1
  ENSCAFP00845041791
  ENSCAFP00845041791.1
  ENSCAFP00845041803.1
  ENSCAFP00845041811.1
  ENSCAFP00845041816
  ENSCAFP00845041816.1
Reference Protein Sequences
RefSeq Acc Id: XP_005639134   ⟸   XM_005639077
- Peptide Label: isoform X2
- UniProtKB: A0A8C0TQJ6 (UniProtKB/TrEMBL),   A0A8C0KEI5 (UniProtKB/TrEMBL),   A0A8I3Q374 (UniProtKB/TrEMBL),   A0A8C0RQD3 (UniProtKB/TrEMBL),   A0A8I3Q382 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022269260   ⟸   XM_022413552
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RQD3 (UniProtKB/TrEMBL),   A0A8I3Q382 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022269261   ⟸   XM_022413553
- Peptide Label: isoform X3
- UniProtKB: A0A8C0RQD3 (UniProtKB/TrEMBL),   A0A8I3Q382 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022269262   ⟸   XM_022413554
- Peptide Label: isoform X4
- UniProtKB: A0A8C0RQD3 (UniProtKB/TrEMBL),   A0A8I3Q382 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000047634   ⟸   ENSCAFT00000083483
RefSeq Acc Id: ENSCAFP00000012634   ⟸   ENSCAFT00000013659
RefSeq Acc Id: ENSCAFP00000048195   ⟸   ENSCAFT00000062452
RefSeq Acc Id: ENSCAFP00000066168   ⟸   ENSCAFT00000075743
RefSeq Acc Id: XP_038374210   ⟸   XM_038518282
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038374209   ⟸   XM_038518281
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038374211   ⟸   XM_038518283
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038374212   ⟸   XM_038518284
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038502133   ⟸   XM_038646205
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038502132   ⟸   XM_038646204
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038502134   ⟸   XM_038646206
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038502135   ⟸   XM_038646207
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038299787   ⟸   XM_038443859
- Peptide Label: isoform X2
- UniProtKB: A0A8C0TQJ6 (UniProtKB/TrEMBL),   A0A8C0KEI5 (UniProtKB/TrEMBL),   A0A8I3Q374 (UniProtKB/TrEMBL),   A0A8C0RQD3 (UniProtKB/TrEMBL),   A0A8I3Q382 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038299786   ⟸   XM_038443858
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RQD3 (UniProtKB/TrEMBL),   A0A8I3Q382 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038299788   ⟸   XM_038443860
- Peptide Label: isoform X3
- UniProtKB: A0A8C0RQD3 (UniProtKB/TrEMBL),   A0A8I3Q382 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038299789   ⟸   XM_038443861
- Peptide Label: isoform X4
- UniProtKB: A0A8C0RQD3 (UniProtKB/TrEMBL),   A0A8I3Q382 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438330   ⟸   XM_038582402
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RQD3 (UniProtKB/TrEMBL),   A0A8I3Q382 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438331   ⟸   XM_038582403
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KEI5 (UniProtKB/TrEMBL),   A0A8C0RQD3 (UniProtKB/TrEMBL),   A0A8C0TQJ6 (UniProtKB/TrEMBL),   A0A8I3Q374 (UniProtKB/TrEMBL),   A0A8I3Q382 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438332   ⟸   XM_038582404
- Peptide Label: isoform X3
- UniProtKB: A0A8C0RQD3 (UniProtKB/TrEMBL),   A0A8I3Q382 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438333   ⟸   XM_038582405
- Peptide Label: isoform X4
- UniProtKB: A0A8C0RQD3 (UniProtKB/TrEMBL),   A0A8I3Q382 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845041816   ⟸   ENSCAFT00845053251
RefSeq Acc Id: ENSCAFP00845041811   ⟸   ENSCAFT00845053245
RefSeq Acc Id: ENSCAFP00845041791   ⟸   ENSCAFT00845053223
RefSeq Acc Id: ENSCAFP00845041803   ⟸   ENSCAFT00845053235

Promoters
RGD ID:13688679
Promoter ID:EPDNEW_C6749
Type:single initiation site
Name:SCARB2_1
Description:scavenger receptor class B member 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.132865,474 - 865,534EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000008611 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030021379 UniProtKB/TrEMBL
  ENSCAFG00040023855 UniProtKB/TrEMBL
  ENSCAFG00845029992 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000013659.5 UniProtKB/TrEMBL
  ENSCAFT00000062452.2 UniProtKB/TrEMBL
  ENSCAFT00000083483.2 UniProtKB/TrEMBL
  ENSCAFT00000097303.1 UniProtKB/TrEMBL
  ENSCAFT00030039336.1 UniProtKB/TrEMBL
  ENSCAFT00030039402.1 UniProtKB/TrEMBL
  ENSCAFT00030039452.1 UniProtKB/TrEMBL
  ENSCAFT00030039491.1 UniProtKB/TrEMBL
  ENSCAFT00040044486.1 UniProtKB/TrEMBL
  ENSCAFT00040044557.1 UniProtKB/TrEMBL
  ENSCAFT00040044587.1 UniProtKB/TrEMBL
  ENSCAFT00040044598.1 UniProtKB/TrEMBL
  ENSCAFT00845053223 ENTREZGENE
  ENSCAFT00845053223.1 UniProtKB/TrEMBL
  ENSCAFT00845053235.1 UniProtKB/TrEMBL
  ENSCAFT00845053245.1 UniProtKB/TrEMBL
  ENSCAFT00845053251 ENTREZGENE
  ENSCAFT00845053251.1 UniProtKB/TrEMBL
InterPro CD36_fam UniProtKB/TrEMBL
  LimpII UniProtKB/TrEMBL
KEGG Report cfa:478435 UniProtKB/TrEMBL
NCBI Gene SCARB2 ENTREZGENE
PANTHER LYSOSOME MEMBRANE PROTEIN 2 UniProtKB/TrEMBL
  PTHR11923 UniProtKB/TrEMBL
Pfam CD36 UniProtKB/TrEMBL
PRINTS CD36FAMILY UniProtKB/TrEMBL
  LIMPII UniProtKB/TrEMBL
UniProt A0A8C0KEI5 ENTREZGENE
  A0A8C0RQD3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0RQD9_CANLF UniProtKB/TrEMBL
  A0A8C0TQJ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TRZ9_CANLF UniProtKB/TrEMBL
  A0A8I3Q292_CANLF UniProtKB/TrEMBL
  A0A8I3Q374 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q382 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q9D1_CANLF UniProtKB/TrEMBL
  A0A8P0PMD7_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:45899 ENTREZGENE