NDUFB10 (NADH:ubiquinone oxidoreductase subunit B10) - Rat Genome Database

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Gene: NDUFB10 (NADH:ubiquinone oxidoreductase subunit B10) Canis lupus familiaris
Analyze
Symbol: NDUFB10
Name: NADH:ubiquinone oxidoreductase subunit B10
RGD ID: 12413709
Description: INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH epilepsy (ortholog); idiopathic generalized epilepsy (ortholog); mitochondrial complex I deficiency (ortholog); FOUND IN mitochondrial respiratory chain complex I (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,968,737 - 38,971,214 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,968,742 - 38,971,196 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,208,429 - 40,210,907 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,285,757 - 39,288,235 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,282,767 - 39,288,119 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,962,532 - 38,965,010 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,934,840 - 38,937,318 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,413,727 - 39,416,205 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NDUFB10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,968,737 - 38,971,214 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,968,742 - 38,971,196 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,208,429 - 40,210,907 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,285,757 - 39,288,235 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,282,767 - 39,288,119 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,962,532 - 38,965,010 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,934,840 - 38,937,318 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,413,727 - 39,416,205 (-)NCBIUU_Cfam_GSD_1.0
NDUFB10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,959,538 - 1,961,975 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl161,959,538 - 1,961,975 (+)EnsemblGRCh38hg38GRCh38
GRCh37162,009,539 - 2,011,976 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,949,520 - 1,951,977 (+)NCBINCBI36Build 36hg18NCBI36
Build 34161,949,519 - 1,951,977NCBI
Celera162,221,698 - 2,224,158 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef161,933,643 - 1,936,103 (+)NCBIHuRef
CHM1_1162,009,462 - 2,011,922 (+)NCBICHM1_1
T2T-CHM13v2.0161,979,496 - 1,981,934 (+)NCBIT2T-CHM13v2.0
Ndufb10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,941,034 - 24,943,397 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,941,034 - 24,943,452 (-)EnsemblGRCm39 Ensembl
GRCm381724,722,060 - 24,724,423 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,722,060 - 24,724,478 (-)EnsemblGRCm38mm10GRCm38
MGSCv371724,859,012 - 24,861,333 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361724,449,667 - 24,451,988 (-)NCBIMGSCv36mm8
Celera1725,245,195 - 25,247,516 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.51NCBI
Ndufb10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,253,805 - 14,255,966 (-)NCBIGRCr8
mRatBN7.21013,749,273 - 13,751,434 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,749,275 - 13,751,442 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1018,496,065 - 18,498,341 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,984,925 - 17,987,201 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01013,484,121 - 13,486,397 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01014,090,128 - 14,092,289 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,090,128 - 14,092,289 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01013,905,856 - 13,908,017 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,977,307 - 13,979,468 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1013,428,991 - 13,431,152 (-)NCBICelera
Cytogenetic Map10q12NCBI
Ndufb10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,306,741 - 15,309,167 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544215,306,688 - 15,309,281 (-)NCBIChiLan1.0ChiLan1.0
NDUFB10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,385,452 - 2,389,332 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,167,362 - 6,171,242 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v016742,402 - 744,850 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,048,550 - 2,051,005 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,048,550 - 2,051,005 (+)Ensemblpanpan1.1panPan2
Ndufb10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,633,467 - 104,635,982 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366942,073,354 - 2,076,043 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366942,073,481 - 2,075,989 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFB10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl340,003,115 - 40,005,588 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1340,003,109 - 40,005,650 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NDUFB10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,856,476 - 1,859,336 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl51,856,157 - 1,862,529 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606829,217,128 - 29,219,978 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufb10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624913297,732 - 300,213 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624913297,657 - 300,348 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NDUFB10
9 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000030965   ⟹   ENSCAFP00000028799
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl638,968,742 - 38,971,196 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845032083   ⟹   ENSCAFP00845025084
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl639,282,767 - 39,288,119 (-)Ensembl
RefSeq Acc Id: XM_038479513   ⟹   XP_038335441
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1638,962,532 - 38,965,010 (-)NCBI
RefSeq Acc Id: XM_038540775   ⟹   XP_038396703
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0639,413,727 - 39,416,205 (-)NCBI
RefSeq Acc Id: XM_038604893   ⟹   XP_038460821
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0638,934,840 - 38,937,318 (-)NCBI
RefSeq Acc Id: XM_038669579   ⟹   XP_038525507
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0639,285,757 - 39,288,235 (-)NCBI
RefSeq Acc Id: XM_537012   ⟹   XP_537012
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1638,968,737 - 38,971,214 (-)NCBI
Dog10K_Boxer_Tasha640,208,429 - 40,210,907 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_537012   ⟸   XM_537012
- UniProtKB: A0A8C0JG75 (UniProtKB/TrEMBL),   A0A8C0NYV9 (UniProtKB/TrEMBL),   A0A8C0PNT1 (UniProtKB/TrEMBL),   A0A8I3P231 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000028799   ⟸   ENSCAFT00000030965
RefSeq Acc Id: XP_038335441   ⟸   XM_038479513
RefSeq Acc Id: XP_038460821   ⟸   XM_038604893
RefSeq Acc Id: XP_038525507   ⟸   XM_038669579
- UniProtKB: A0A8C0JG75 (UniProtKB/TrEMBL),   A0A8C0NYV9 (UniProtKB/TrEMBL),   A0A8C0PNT1 (UniProtKB/TrEMBL),   A0A8I3P231 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038396703   ⟸   XM_038540775
- UniProtKB: A0A8C0JG75 (UniProtKB/TrEMBL),   A0A8C0NYV9 (UniProtKB/TrEMBL),   A0A8C0PNT1 (UniProtKB/TrEMBL),   A0A8I3P231 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845025084   ⟸   ENSCAFT00845032083

Promoters
RGD ID:13683738
Promoter ID:EPDNEW_C1806
Type:initiation region
Name:NDUFB10_1
Description:NADH:ubiquinone oxidoreductase subunit B10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1638,971,195 - 38,971,255EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019476 Ensembl
  ENSCAFG00000058925 UniProtKB/TrEMBL
  ENSCAFG00030020102 UniProtKB/TrEMBL
  ENSCAFG00040001173 UniProtKB/TrEMBL
  ENSCAFG00845018108 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000095881.1 UniProtKB/TrEMBL
  ENSCAFT00030036981.1 UniProtKB/TrEMBL
  ENSCAFT00040002194.1 UniProtKB/TrEMBL
  ENSCAFT00845032083 ENTREZGENE
  ENSCAFT00845032083.1 UniProtKB/TrEMBL
InterPro NADH_UbQ_OxRdtase_su10 UniProtKB/TrEMBL
  NDUFB10 UniProtKB/TrEMBL
KEGG Report cfa:479887 UniProtKB/TrEMBL
NCBI Gene NDUFB10 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 BETA SUBCOMPLEX SUBUNIT 10 UniProtKB/TrEMBL
  PTHR13094 UniProtKB/TrEMBL
Pfam NDUFB10 UniProtKB/TrEMBL
UniProt A0A8C0JG75 ENTREZGENE
  A0A8C0NYV9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PNT1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P231 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:43699 ENTREZGENE