B3GALT1 (beta-1,3-galactosyltransferase 1) - Rat Genome Database

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Gene: B3GALT1 (beta-1,3-galactosyltransferase 1) Canis lupus familiaris
Analyze
Symbol: B3GALT1
Name: beta-1,3-galactosyltransferase 1
RGD ID: 12412612
Description: ENCODES a protein that exhibits glycosyltransferase activity (inferred); hexosyltransferase activity (inferred); UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity (inferred); INVOLVED IN galactosylceramide biosynthetic process (ortholog); oligosaccharide biosynthetic process (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13612,263,162 - 12,766,525 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3612,761,821 - 12,762,801 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3612,336,938 - 12,775,614 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03612,384,303 - 12,888,766 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13612,470,747 - 12,974,000 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03612,449,918 - 12,953,890 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03612,567,513 - 13,071,386 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
B3GALT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13612,263,162 - 12,766,525 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3612,761,821 - 12,762,801 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3612,336,938 - 12,775,614 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03612,384,303 - 12,888,766 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13612,470,747 - 12,974,000 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03612,449,918 - 12,953,890 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03612,567,513 - 13,071,386 (+)NCBIUU_Cfam_GSD_1.0
B3GALT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382167,293,001 - 167,874,045 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2167,293,001 - 167,874,045 (+)EnsemblGRCh38hg38GRCh38
GRCh372168,149,511 - 168,730,555 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362168,383,428 - 168,435,612 (+)NCBINCBI36Build 36hg18NCBI36
Build 342168,500,688 - 168,552,873NCBI
Celera2162,284,031 - 162,336,209 (+)NCBICelera
Cytogenetic Map2q24.3NCBI
HuRef2160,555,235 - 160,607,422 (+)NCBIHuRef
CHM1_12168,681,070 - 168,733,250 (+)NCBICHM1_1
T2T-CHM13v2.02167,750,886 - 168,331,887 (+)NCBIT2T-CHM13v2.0
B3galt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39267,395,528 - 67,953,226 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl267,396,215 - 67,953,033 (+)EnsemblGRCm39 Ensembl
GRCm38267,565,689 - 68,122,882 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl267,565,871 - 68,122,689 (+)EnsemblGRCm38mm10GRCm38
MGSCv37267,955,770 - 67,960,747 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36267,918,567 - 67,923,529 (+)NCBIMGSCv36mm8
Celera269,793,879 - 69,798,856 (+)NCBICelera
Cytogenetic Map2C1.3NCBI
cM Map239.53NCBI
B3galt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8372,661,410 - 73,234,447 (+)NCBIGRCr8
mRatBN7.2352,253,413 - 52,826,508 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl352,253,618 - 52,825,313 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx356,198,294 - 56,211,631 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0364,781,856 - 64,795,193 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0362,548,152 - 62,561,508 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0353,699,409 - 54,269,612 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl354,253,949 - 54,267,292 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0360,870,422 - 60,883,765 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4350,146,767 - 50,160,110 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1350,054,001 - 50,055,718 (+)NCBI
Celera352,380,792 - 52,394,125 (+)NCBICelera
Cytogenetic Map3q21NCBI
B3galt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554496,452,189 - 6,553,158 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554496,452,189 - 7,007,329 (-)NCBIChiLan1.0ChiLan1.0
B3GALT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21369,934,878 - 70,509,330 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B69,949,742 - 70,524,307 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B54,550,248 - 55,124,358 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B172,023,342 - 172,591,939 (+)NCBIpanpan1.1PanPan1.1panPan2
B3galt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303129,484,141 - 130,096,334 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646911,589,492 - 11,590,472 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646911,586,710 - 12,133,053 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GALT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1574,335,112 - 74,339,380 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11573,772,833 - 74,340,060 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21582,904,443 - 83,311,307 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B3GALT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11052,792,505 - 53,368,536 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1053,366,522 - 53,367,499 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040146,179,848 - 146,733,016 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B3galt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247875,578,168 - 5,579,148 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247875,040,161 - 5,582,911 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in B3GALT1
5605 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 4 1 5
Below cutoff 5 2 12 6 6 5 7 8 9 4

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005640269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022414753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038446953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038446954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038446955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038463476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038521024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038521025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038521026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038584724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038584726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038584727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038649141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038649142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038649143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005307753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005318240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005350750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005418371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000018577   ⟹   ENSCAFP00000017207
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3612,761,821 - 12,762,801 (+)Ensembl
RefSeq Acc Id: XM_005640269   ⟹   XP_005640326
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13612,263,162 - 12,766,525 (+)NCBI
Dog10K_Boxer_Tasha3612,336,938 - 12,775,614 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022414753   ⟹   XP_022270461
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13612,760,778 - 12,766,525 (+)NCBI
Dog10K_Boxer_Tasha3612,769,914 - 12,775,614 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038446953   ⟹   XP_038302881
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03612,384,303 - 12,888,766 (+)NCBI
RefSeq Acc Id: XM_038446954   ⟹   XP_038302882
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03612,830,955 - 12,888,766 (+)NCBI
RefSeq Acc Id: XM_038446955   ⟹   XP_038302883
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03612,883,062 - 12,888,766 (+)NCBI
RefSeq Acc Id: XM_038463476   ⟹   XP_038319404
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3612,718,319 - 12,775,614 (+)NCBI
RefSeq Acc Id: XM_038521024   ⟹   XP_038376952
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13612,470,747 - 12,974,000 (+)NCBI
RefSeq Acc Id: XM_038521025   ⟹   XP_038376953
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13612,916,502 - 12,974,000 (+)NCBI
RefSeq Acc Id: XM_038521026   ⟹   XP_038376954
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13612,968,298 - 12,974,000 (+)NCBI
RefSeq Acc Id: XM_038584724   ⟹   XP_038440652
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03612,567,513 - 13,071,386 (+)NCBI
RefSeq Acc Id: XM_038584726   ⟹   XP_038440654
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03613,014,118 - 13,071,386 (+)NCBI
RefSeq Acc Id: XM_038584727   ⟹   XP_038440655
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03613,065,684 - 13,071,386 (+)NCBI
RefSeq Acc Id: XM_038649141   ⟹   XP_038505069
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03612,449,918 - 12,953,890 (+)NCBI
RefSeq Acc Id: XM_038649142   ⟹   XP_038505070
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03612,896,348 - 12,953,890 (+)NCBI
RefSeq Acc Id: XM_038649143   ⟹   XP_038505071
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03612,948,188 - 12,953,890 (+)NCBI
RefSeq Acc Id: XR_005307753
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03612,384,303 - 12,880,700 (+)NCBI
RefSeq Acc Id: XR_005318240
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3612,336,938 - 12,767,552 (+)NCBI
RefSeq Acc Id: XR_005350750
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13612,470,747 - 12,965,926 (+)NCBI
RefSeq Acc Id: XR_005418371
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03612,449,918 - 12,945,825 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005640326   ⟸   XM_005640269
- UniProtKB: A0A8C0JLC3 (UniProtKB/TrEMBL),   A0A8C0TY66 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022270461   ⟸   XM_022414753
- UniProtKB: A0A8C0JLC3 (UniProtKB/TrEMBL),   A0A8C0TY66 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000017207   ⟸   ENSCAFT00000018577
RefSeq Acc Id: XP_038376952   ⟸   XM_038521024
RefSeq Acc Id: XP_038376953   ⟸   XM_038521025
RefSeq Acc Id: XP_038376954   ⟸   XM_038521026
RefSeq Acc Id: XP_038505069   ⟸   XM_038649141
RefSeq Acc Id: XP_038505070   ⟸   XM_038649142
RefSeq Acc Id: XP_038505071   ⟸   XM_038649143
RefSeq Acc Id: XP_038302881   ⟸   XM_038446953
- UniProtKB: A0A8C0JLC3 (UniProtKB/TrEMBL),   A0A8C0TY66 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038302882   ⟸   XM_038446954
- UniProtKB: A0A8C0JLC3 (UniProtKB/TrEMBL),   A0A8C0TY66 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038302883   ⟸   XM_038446955
- UniProtKB: A0A8C0JLC3 (UniProtKB/TrEMBL),   A0A8C0TY66 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038319404   ⟸   XM_038463476
- UniProtKB: A0A8C0JLC3 (UniProtKB/TrEMBL),   A0A8C0TY66 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038440652   ⟸   XM_038584724
- UniProtKB: A0A8C0JLC3 (UniProtKB/TrEMBL),   A0A8C0TY66 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038440654   ⟸   XM_038584726
- UniProtKB: A0A8C0JLC3 (UniProtKB/TrEMBL),   A0A8C0TY66 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038440655   ⟸   XM_038584727
- UniProtKB: A0A8C0JLC3 (UniProtKB/TrEMBL),   A0A8C0TY66 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011709 Ensembl
  ENSCAFG00030021907 UniProtKB/TrEMBL
  ENSCAFG00040025492 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030040188.1 UniProtKB/TrEMBL
  ENSCAFT00040047585.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.50 UniProtKB/TrEMBL
InterPro Glyco_trans_31 UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
KEGG Report cfa:488386 UniProtKB/TrEMBL
NCBI Gene B3GALT1 ENTREZGENE
PANTHER BETA-1,3-GALACTOSYLTRANSFERASE 1 UniProtKB/TrEMBL
  PTHR11214 UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A8C0JLC3 ENTREZGENE
  A0A8C0TY66 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38333 ENTREZGENE