TRAPPC11 (trafficking protein particle complex subunit 11) - Rat Genome Database

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Gene: TRAPPC11 (trafficking protein particle complex subunit 11) Canis lupus familiaris
Analyze
Symbol: TRAPPC11
Name: trafficking protein particle complex subunit 11
RGD ID: 12407522
Description: INVOLVED IN constitutive secretory pathway (inferred); endoplasmic reticulum to Golgi vesicle-mediated transport (inferred); Golgi organization (inferred); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy (ortholog); Autosomal Recessive Limb-Girdle Muscular Dystrophy Type 23 (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2S (ortholog); FOUND IN cytoplasm (inferred); Golgi apparatus (inferred); TRAPP complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C16H4orf41; trafficking protein particle complex 11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11646,687,514 - 46,735,909 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1646,687,516 - 46,733,001 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1647,116,087 - 47,164,504 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01648,904,813 - 48,953,228 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1648,904,092 - 48,953,235 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11646,868,413 - 46,916,787 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01647,483,922 - 47,532,332 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01647,617,590 - 47,666,176 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
TRAPPC11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11646,687,514 - 46,735,909 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1646,687,516 - 46,733,001 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1647,116,087 - 47,164,504 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01648,904,813 - 48,953,228 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1648,904,092 - 48,953,235 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11646,868,413 - 46,916,787 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01647,483,922 - 47,532,332 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01647,617,590 - 47,666,176 (-)NCBIUU_Cfam_GSD_1.0
TRAPPC11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384183,659,293 - 183,713,589 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4183,659,267 - 183,713,594 (+)EnsemblGRCh38hg38GRCh38
GRCh374184,580,446 - 184,634,742 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364184,817,440 - 184,871,739 (+)NCBINCBI36Build 36hg18NCBI36
Celera4181,913,550 - 181,967,765 (+)NCBICelera
Cytogenetic Map4q35.1NCBI
HuRef4180,339,689 - 180,393,931 (+)NCBIHuRef
CHM1_14184,557,392 - 184,611,646 (+)NCBICHM1_1
T2T-CHM13v2.04187,002,489 - 187,056,786 (+)NCBIT2T-CHM13v2.0
Trappc11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39847,943,163 - 47,986,505 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl847,943,150 - 47,986,505 (-)EnsemblGRCm39 Ensembl
GRCm38847,490,128 - 47,533,470 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl847,490,115 - 47,533,470 (-)EnsemblGRCm38mm10GRCm38
MGSCv37848,575,482 - 48,618,824 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36848,988,945 - 49,032,287 (-)NCBIMGSCv36mm8
Celera850,162,129 - 50,205,492 (-)NCBICelera
Cytogenetic Map8B1.1NCBI
cM Map826.86NCBI
Trappc11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81651,465,631 - 51,512,003 (+)NCBIGRCr8
mRatBN7.21644,733,169 - 44,779,324 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1644,733,169 - 44,779,322 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1650,139,496 - 50,185,644 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01653,500,067 - 53,545,928 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01648,779,164 - 48,824,612 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01647,874,993 - 47,920,822 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1647,874,993 - 47,920,823 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01647,594,590 - 47,640,421 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41647,946,658 - 47,992,785 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11647,946,732 - 47,992,083 (+)NCBI
Celera1642,743,309 - 42,789,026 (+)NCBICelera
Cytogenetic Map16q11NCBI
Trappc11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540325,165,784 - 25,211,847 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540325,168,212 - 25,211,344 (-)NCBIChiLan1.0ChiLan1.0
TRAPPC11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23181,392,768 - 181,447,096 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14181,757,634 - 181,811,959 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04175,836,327 - 175,890,641 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14188,061,986 - 188,116,535 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4188,062,815 - 188,116,535 (+)Ensemblpanpan1.1panPan2
Trappc11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494332,641,368 - 32,686,366 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365545,423,256 - 5,468,630 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365545,424,964 - 5,468,633 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAPPC11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1544,989,636 - 45,040,761 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11544,989,636 - 45,040,766 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21551,604,748 - 51,656,147 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRAPPC11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17129,634,281 - 129,688,509 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7129,634,287 - 129,688,530 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037109,855,161 - 109,909,193 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trappc11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476914,388,035 - 14,455,171 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476914,388,116 - 14,453,966 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TRAPPC11
576 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 1 18 2 6 2 6 5 12 8 10 6
Low 4 4 4 4 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000012559   ⟹   ENSCAFP00000011627
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1646,687,516 - 46,733,001 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000065496   ⟹   ENSCAFP00000064187
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1646,690,248 - 46,733,001 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845028515   ⟹   ENSCAFP00845022431
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1648,904,092 - 48,953,235 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845028665   ⟹   ENSCAFP00845022559
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1648,904,095 - 48,953,211 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845028735   ⟹   ENSCAFP00845022616
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1648,907,547 - 48,953,235 (-)Ensembl
RefSeq Acc Id: XM_038452274   ⟹   XP_038308202
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1647,118,602 - 47,164,504 (-)NCBI
RefSeq Acc Id: XM_038497965   ⟹   XP_038353893
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11646,868,413 - 46,916,787 (-)NCBI
RefSeq Acc Id: XM_038560439   ⟹   XP_038416367
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01647,617,590 - 47,666,175 (-)NCBI
RefSeq Acc Id: XM_038560440   ⟹   XP_038416368
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01647,620,105 - 47,666,176 (-)NCBI
RefSeq Acc Id: XM_038624488   ⟹   XP_038480416
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01647,483,922 - 47,532,331 (-)NCBI
RefSeq Acc Id: XM_038624489   ⟹   XP_038480417
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01647,486,437 - 47,532,332 (-)NCBI
RefSeq Acc Id: XM_038690256   ⟹   XP_038546184
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01648,904,813 - 48,953,227 (-)NCBI
RefSeq Acc Id: XM_038690257   ⟹   XP_038546185
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01648,907,328 - 48,953,228 (-)NCBI
RefSeq Acc Id: XM_540029   ⟹   XP_540029
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11646,687,514 - 46,735,909 (-)NCBI
Dog10K_Boxer_Tasha1647,116,087 - 47,164,503 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_540029   ⟸   XM_540029
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JP43 (UniProtKB/TrEMBL),   A0A8C0NF92 (UniProtKB/TrEMBL),   A0A8I3NTW4 (UniProtKB/TrEMBL),   A0A8C0YYI0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000064187   ⟸   ENSCAFT00000065496
RefSeq Acc Id: ENSCAFP00000011627   ⟸   ENSCAFT00000012559
RefSeq Acc Id: XP_038353893   ⟸   XM_038497965
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038480416   ⟸   XM_038624488
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038480417   ⟸   XM_038624489
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038546184   ⟸   XM_038690256
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JP43 (UniProtKB/TrEMBL),   A0A8C0NF92 (UniProtKB/TrEMBL),   A0A8I3NTW4 (UniProtKB/TrEMBL),   A0A8C0YYI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038546185   ⟸   XM_038690257
- Peptide Label: isoform X2
- UniProtKB: A0A8I3P7F6 (UniProtKB/TrEMBL),   A0A8P0TFN6 (UniProtKB/TrEMBL),   A0A8C0YYI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038308202   ⟸   XM_038452274
- Peptide Label: isoform X2
- UniProtKB: A0A8I3P7F6 (UniProtKB/TrEMBL),   A0A8P0TFN6 (UniProtKB/TrEMBL),   A0A8C0YYI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038416367   ⟸   XM_038560439
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JP43 (UniProtKB/TrEMBL),   A0A8C0NF92 (UniProtKB/TrEMBL),   A0A8C0YYI0 (UniProtKB/TrEMBL),   A0A8I3NTW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038416368   ⟸   XM_038560440
- Peptide Label: isoform X2
- UniProtKB: A0A8C0YYI0 (UniProtKB/TrEMBL),   A0A8I3P7F6 (UniProtKB/TrEMBL),   A0A8P0TFN6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845022431   ⟸   ENSCAFT00845028515
RefSeq Acc Id: ENSCAFP00845022616   ⟸   ENSCAFT00845028735
RefSeq Acc Id: ENSCAFP00845022559   ⟸   ENSCAFT00845028665
Protein Domains
Trafficking protein particle complex subunit   Trafficking protein particle complex subunit 11 C-

Promoters
RGD ID:13686137
Promoter ID:EPDNEW_C4207
Type:multiple initiation site
Name:TRAPPC11_1
Description:trafficking protein particle complex 11
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11646,735,908 - 46,735,968EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000007825 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030013276 UniProtKB/TrEMBL
  ENSCAFG00040014005 UniProtKB/TrEMBL
  ENSCAFG00845015913 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000012559.5 UniProtKB/TrEMBL
  ENSCAFT00000065496.2 UniProtKB/TrEMBL
  ENSCAFT00000103018.1 UniProtKB/TrEMBL
  ENSCAFT00030024850.1 UniProtKB/TrEMBL
  ENSCAFT00040026892.1 UniProtKB/TrEMBL
  ENSCAFT00040026984.1 UniProtKB/TrEMBL
  ENSCAFT00845028515 ENTREZGENE
  ENSCAFT00845028515.1 UniProtKB/TrEMBL
  ENSCAFT00845028665.1 UniProtKB/TrEMBL
  ENSCAFT00845028735 ENTREZGENE
  ENSCAFT00845028735.1 UniProtKB/TrEMBL
InterPro TPC11 UniProtKB/TrEMBL
  TRAPPC11_C UniProtKB/TrEMBL
NCBI Gene TRAPPC11 ENTREZGENE
PANTHER FOIE GRAS UniProtKB/TrEMBL
  TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 11 UniProtKB/TrEMBL
Pfam Foie-gras_1 UniProtKB/TrEMBL
  Gryzun-like UniProtKB/TrEMBL
UniProt A0A8C0JP43 ENTREZGENE
  A0A8C0NF92 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SMZ9_CANLF UniProtKB/TrEMBL
  A0A8C0YYI0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NTW4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P7F6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RZ50_CANLF UniProtKB/TrEMBL
  A0A8P0PIW6_CANLF UniProtKB/TrEMBL
  A0A8P0TFN6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:47778 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-15 TRAPPC11  trafficking protein particle complex subunit 11  TRAPPC11  trafficking protein particle complex 11  Symbol and/or name change 19259463 PROVISIONAL