LOC475156 (peroxiredoxin 1 pseudogene) - Rat Genome Database

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Gene: LOC475156 (peroxiredoxin 1 pseudogene) Canis lupus familiaris
Analyze
Symbol: LOC475156
Name: peroxiredoxin 1 pseudogene
RGD ID: 12400670
Description: ENCODES an pseudo that exhibits peroxidase activity (inferred); peroxiredoxin activity (inferred); thioredoxin peroxidase activity (inferred); INVOLVED IN cell redox homeostasis (inferred); hydrogen peroxide catabolic process (inferred); leukocyte activation (inferred); FOUND IN cytosol (inferred)
Type: pseudo
RefSeq Status: INFERRED
Related Functional Gene: PRDX1  
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11350,791,386 - 50,792,228 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1350,696,363 - 50,697,205 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01351,428,776 - 51,429,618 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11351,108,208 - 51,109,050 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01350,616,042 - 50,616,884 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01351,562,349 - 51,563,191 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)

Molecular Function

References

Genomics

Variants

.
Variants in LOC475156
28 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 1 1
Below cutoff 4 3 20 6 5 6 4 3 11 8 8 6

Sequence


Protein Sequences
Ensembl Protein ENSCAFP00845020075.1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00845014256 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00845025496.1 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
InterPro AhpC/TSA UniProtKB/TrEMBL
  Peroxiredoxin_AhpC-typ UniProtKB/TrEMBL
  Peroxiredoxin_C UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
  Thioredoxin_domain UniProtKB/TrEMBL
NCBI Gene LOC475156 ENTREZGENE
PANTHER PEROXIREDOXIN-1 UniProtKB/TrEMBL
  THIOREDOXIN PEROXIDASE UniProtKB/TrEMBL
Pfam 1-cysPrx_C UniProtKB/TrEMBL
  AhpC-TSA UniProtKB/TrEMBL
PIRSF AHPC UniProtKB/TrEMBL
PROSITE THIOREDOXIN_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF52833 UniProtKB/TrEMBL
UniProt A0A8I3NHE7_CANLF UniProtKB/TrEMBL