CLXN (calaxin) - Rat Genome Database

Name: CLXN
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: CLXN (calaxin) Canis lupus familiaris

Analyze

Symbol:

CLXN (Ensembl: EFCAB1)

Name:

calaxin

RGD ID:

12392719

Description:

ENCODES a protein that exhibits calcium ion binding (inferred); metal ion binding (inferred); INVOLVED IN regulation of cilium movement (ortholog); regulation of flagellated sperm motility (ortholog); ASSOCIATED WITH immunodeficiency 26 (ortholog); Primary Ciliary Dyskinesia 53 (ortholog); FOUND IN cilium (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

EF-hand calcium binding domain 1; EF-hand calcium-binding domain-containing protein 1; EFCAB1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CLXN (calaxin)	HGNC	HomoloGene, NCBI
Mus musculus (house mouse):	Clxn (calaxin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Clxn (calaxin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Clxn (calaxin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CLXN (calaxin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Clxn (calaxin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CLXN (calaxin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CLXN (calaxin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Clxn (calaxin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	941,821 - 964,424 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	955,631 - 964,507 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	1,368,435 - 1,391,005 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	998,111 - 1,020,746 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	1,005,818 - 1,020,854 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	939,944 - 962,492 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	1,166,038 - 1,188,555 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	1,203,459 - 1,226,090 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

immunodeficiency 26 (ISO)

Primary Ciliary Dyskinesia 53 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of cilium movement (ISO)

regulation of flagellated sperm motility (ISO)

Cellular Component

cilium (ISO)

Molecular Function

calcium ion binding (IEA)

metal ion binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CLXN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	941,821 - 964,424 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	955,631 - 964,507 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	1,368,435 - 1,391,005 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	998,111 - 1,020,746 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	1,005,818 - 1,020,854 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	939,944 - 962,492 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	1,166,038 - 1,188,555 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	1,203,459 - 1,226,090 (-)	NCBI		UU_Cfam_GSD_1.0

CLXN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	48,710,789 - 48,735,311 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	48,710,789 - 48,735,311 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	49,623,348 - 49,647,870 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	49,798,520 - 49,810,344 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	8	45,614,709 - 45,635,104 (-)	NCBI		Celera
Cytogenetic Map	8	q11.21	NCBI
HuRef	8	45,091,764 - 45,112,108 (-)	NCBI		HuRef
CHM1_1	8	49,679,835 - 49,700,230 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	49,088,639 - 49,113,160 (-)	NCBI		T2T-CHM13v2.0

Clxn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	14,724,315 - 14,786,925 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	14,724,470 - 14,799,235 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	14,906,224 - 14,969,061 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	14,906,606 - 14,981,371 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	14,906,739 - 14,924,615 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	14,820,224 - 14,838,100 (+)	NCBI		MGSCv36	mm8
Celera	16	15,485,609 - 15,503,486 (+)	NCBI		Celera
Cytogenetic Map	16	A1	NCBI
cM Map	16	10.09	NCBI

Clxn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	99,410,925 - 99,500,713 (-)	NCBI		GRCr8
mRatBN7.2	11	85,977,231 - 85,996,561 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	85,983,304 - 85,996,538 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	94,725,999 - 94,739,235 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	87,385,950 - 87,399,180 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	86,440,762 - 86,454,000 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	90,214,563 - 90,234,319 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	90,221,056 - 90,234,286 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	93,267,696 - 93,287,964 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	11	84,713,805 - 84,727,035 (-)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

Clxn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955454	8,578,068 - 8,591,992 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955454	8,570,014 - 8,591,904 (-)	NCBI	ChiLan1.0	ChiLan1.0

CLXN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	64,352,177 - 64,373,215 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	40,045,620 - 40,066,631 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	45,144,794 - 45,165,530 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	42,529,560 - 42,550,005 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	42,529,560 - 42,550,005 (-)	Ensembl	panpan1.1		panPan2

Clxn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	78,797,027 - 78,808,661 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936590	3,986,779 - 3,998,530 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936590	3,986,827 - 3,998,489 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CLXN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	79,378,796 - 79,389,520 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	79,375,487 - 79,387,110 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	86,861,769 - 86,870,580 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CLXN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	44,841,780 - 44,867,521 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	44,855,482 - 44,866,845 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	97,173,554 - 97,184,711 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Clxn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624735	6,781,011 - 6,790,039 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624735	6,780,869 - 6,813,671 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CLXN
205 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium			6						9	8
Low	4		10		3		6		3		9
Below cutoff	1	5	5	5	3	5		6			1	6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005637956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014109323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022412331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022412332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022412333	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038441133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038441134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038441135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038441136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038441137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038441138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038515701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038515702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038515703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038515704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038515705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038515706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038579265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038579266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038579267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038579268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038579269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038579270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038643505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038643506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038643507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038643508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038643509	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038643510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_535064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002620913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002620914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002620915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002620916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005304116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005304117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005304118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005304119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005304120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005316109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005347174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005347175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005347176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005347177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005347178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005380934	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005380935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005380936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005380937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005380938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005414730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005414731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005414732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005414733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005414734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000010686 ⟹ ENSCAFP00000009907

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	29	955,750 - 964,507 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000080047 ⟹ ENSCAFP00000051176

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	29	955,631 - 964,330 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845050275 ⟹ ENSCAFP00845039412

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	29	1,005,818 - 1,020,854 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845050301 ⟹ ENSCAFP00845039434

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	29	1,005,818 - 1,020,677 (-)	Ensembl

RefSeq Acc Id:

XM_005637956 ⟹ XP_005638013

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	29	950,557 - 964,424 (-)	NCBI
Dog10K_Boxer_Tasha	29	1,377,163 - 1,391,005 (-)	NCBI

Sequence:

show sequence

CCGCGCCCGCGTGCGTGGGGTCCCGACCGGCGAGGGTCCGCTCGGCCGCGCGCCCCTGGGCCCC
CGCCGCCGCCGCCGCCCGCGCCCAGCCGGCATGAACCGCAAGAAGCTGCAGAAGCTGACGGACA
CCTTGACCAAAAATTGCAAGAACTTTAATAAATTTGAAGTGAAATGTCTTATAGATCTTTTTTA
TAATTTGATGGGAGAAGTAACAGAGCGGCAAGGTATCACCATTGGACTAGATCGCAATGCATTT
CGAAACATCCTGCACATGACATTTGGAATGACAGACGATATGATTATGGACAGAGTATTCCGAG
GTTTTGATGAGGACAACGATGGTTATGTAAACGTATCAGAGTGGATTTATGGATTATCAGTATT
TCTTCGAGGAACTTTGGAAGAAAAAATGAAATATTGCTTTGAAGTGTTTGATTTGAATGGTGAT
GGATTCATTTCAAAGGAGGAAATGTTCCATATGTTGAAGAACAGCCTTCTCAAACAGCCATCTG
AAGAAGACCCTGATGAAGGAATTAAAGATTTGGTTGAAATAACACTTAAAAAAATGGACCATGA
CCATGATGGGAAGCTGTCTTTCACAGACTATGAACAGGCTGTGAGAGAAGAGACTCTTCTACTG
GAAGCTTTTGGACCATGTCTACCTGATCCAAAGAGTCAGATGGAATTTGAAGCCCAAGTATTCA
AAGATCCAAATGAATTCAATGACATATGAATACCTAAATGTCTGTGTTGTCTCGAGAAACTTGA
GGAAACTGGAGTTTAAGAAAATCAAGAAACTCCCTAAATATCCTAACCTGGTCAAGAATAAAGC
CAAGATTTAGACCTCGTCCAGTTCTAACATTGAAGACCTTCCTGTAAAGCAATATGTGCTCTTT
TAGCCATATGTACTCCTGCGGTTTGAAATTACTGAGCACCCCTGCTTCCTAAAGAATCTTCAAA
TTGCCCCTTCAAGGCTCCCTGGTGGTGCTCTGTACTTGGCATGTTAGTGAGTGAGACCGTTGAC
AACTCTCTCCAAGGCACTGTTCTTATCTGGAAATACCTTAGAGTTTTCTTTCTTTAGTTGAAAT
TTCCCATTTGGATGTGAAGGTGCCCACTTTGGGAACCAATAGGAATCTAGACATTGGACTGGGA
CCTTGCCTTGTCAAGAGTCCACACATGGTGAATGGGGTTCATGAATAGTGGCCAAGCTGTCAGA
TTCTGTGGCTCTGTGGTCAGTACAAGATTAGAAGTGAGATGAGGGTCCACCAACCATGGAAGGA
GAAAGCAGAGGCTGATACCATTGCTGATTTGTGAGGGAAAGGACAGAAATCCTTCAGGAAGGAG
AAGAAAGGGCTGGACTCCTCAAATAAAGAATGTT

hide sequence

RefSeq Acc Id:

XM_014109323 ⟹ XP_013964798

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	29	955,743 - 964,424 (-)	NCBI
Dog10K_Boxer_Tasha	29	1,382,351 - 1,391,005 (-)	NCBI

Sequence:

show sequence

CCGCGCCCGCGTGCGTGGGGTCCCGACCGGCGAGGGTCCGCTCGGCCGCGCGCCCCTGGGCCCC
CGCCGCCGCCGCCGCCCGCGCCCAGCCGGCATGAACCGCAAGAAGCTGCAGAAGCTGACGGACA
CCTTGACCAAAAATTGCAAGAACTTTAATAAATTTGAAGTGAAATGTCTTATAGATCTTTTTTA
TAATTTGATGGGAGAAGTAACAGAGCGGCAAGGTATCACCATTGGACTAGATCGCAATGCATTT
CGAAACATCCTGCACATGACATTTGGAATGACAGACGATATGATTATGGACAGAGATTGCTTTG
AAGTGTTTGATTTGAATGGTGATGGATTCATTTCAAAGGAGGAAATGTTCCATATGTTGAAGAA
CAGCCTTCTCAAACAGCCATCTGAAGAAGACCCTGATGAAGGAATTAAAGATTTGGTTGAAATA
ACACTTAAAAAAATGGACCATGACCATGATGGGAAGCTGTCTTTCACAGACTATGAACAGGCTG
TGAGAGAAGAGACTCTTCTACTGGAAGCTTTTGGACCATGTCTACCTGATCCAAAGAGTCAGAT
GGAATTTGAAGCCCAAGTATTCAAAGATCCAAATGAATTCAATGACATATGAATACCTAAATGT
CTGTGTTGTCTCGAGTGAGTAAAAAAGGAGGTGCATGTG

hide sequence

RefSeq Acc Id:

XM_022412331 ⟹ XP_022268039

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	29	951,834 - 964,424 (-)	NCBI
Dog10K_Boxer_Tasha	29	1,378,459 - 1,391,005 (-)	NCBI

Sequence:

show sequence

CCGCGCCCGCGTGCGTGGGGTCCCGACCGGCGAGGGTCCGCTCGGCCGCGCGCCCCTGGGCCCC
CGCCGCCGCCGCCGCCCGCGCCCAGCCGGCATGAACCGCAAGAAGCTGCAGAAGCTGACGGACA
CCTTGACCAAAAATTGCAAGAACTTTAATAAATTTGAAGTGAAATGTCTTATAGATCTTTTTTA
TAATTTGATGGGAGAAGTAACAGAGCGGCAAGGTATCACCATTGGACTAGATCGCAATGCATTT
CGAAACATCCTGCACATGACATTTGGAATGACAGACGATATGATTATGGACAGAGTATTCCGAG
GTTTTGATGAGGACAACGATGGTTATGTAAACGTATCAGAGTGGATTTATGGATTATCAGTATT
TCTTCGAGGAACTTTGGAAGAAAAAATGAAATATTGCTTTGAAGTGTTTGATTTGAATGGTGAT
GGATTCATTTCAAAGGAGGAAATGTTCCATATGTTGAAGAACAGCCTTCTCAAACAGCCATCTG
AAGAAGACCCTGATGAAGGAATTAAAGATTTGGTTGAAATAACACTTAAAAAAATGGACCATGA
CCATGATGGGAAGCTGTCTTTCACAGACTATGAACAGGCTGTGAGAGAAGAGACTCTTCTACTG
GAAGCTTTTGGACCATGTCTACCTGATCCAAAGAGTCAGATGGAATTTGAAGCCCAAGTATTCA
AAGATCCAAATGAATTCAATGACATATGAATACCTAAATGTCTGTGTTGTCTCGATGACTATTC
TCTGTTAGAATGAAGCAGATGATCTCGTCAAATGTTTTCAGTCTCAGTTACCAATGAAGAAGGA
GCCAACCACTATACATACCGAGCAAATCAAAGTCCCCTTCTCATGTGATGTCTCTCAAGGAAAC
TCTCAGTTTCGAAGGGGAGTGAAAAAGGAAGGCAGCCTAATAGTGAACTATCCTGTGTGAAACA
AAGCATGCTTCCACATTTGAATGGCTTTATCAGAGTGCCATTAGCCTGAGCAGTAGTTAACTGC
TTACAGTTCCATCGTTG

hide sequence

RefSeq Acc Id:

XM_022412332 ⟹ XP_022268040

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	29	954,306 - 964,424 (-)	NCBI
Dog10K_Boxer_Tasha	29	1,380,895 - 1,391,005 (-)	NCBI

Sequence:

show sequence

CCGCGCCCGCGTGCGTGGGGTCCCGACCGGCGAGGGTCCGCTCGGCCGCGCGCCCCTGGGCCCC
CGCCGCCGCCGCCGCCCGCGCCCAGCCGGCATGAACCGCAAGAAGCTGCAGAAGCTGACGGACA
CCTTGACCAAAAATTGCAAGAACTTTAATAAATTTGAAGTGAAATGTCTTATAGATCTTTTTTA
TAATTTGATGGGAGAAGTAACAGAGCGGCAAGGTATCACCATTGGACTAGATCGCAATGCATTT
CGAAACATCCTGCACATGACATTTGGAATGACAGACGATATGATTATGGACAGAGTATTCCGAG
GTTTTGATGAGGACAACGATGGTTATGTAAACGTATCAGAGTGGATTTATGGATTATCAGTATT
TCTTCGAGGAACTTTGGAAGAAAAAATGAAATATTGCTTTGAAGTGTTTGATTTGAATGGTGAT
GGATTCATTTCAAAGGAGGAAATGTTCCATATGTTGAAGAACAGCCTTCTCAAACAGCCATCTG
AAGAAGACCCTGATGAAGGAATTAAAGATTTGGTTGAAATAACACTTAAAAAAATGGACCATGA
CCATGATGGGAAGCTGTCTTTCACAGACTATGAACAGGCTGTGAGAGAAGAGACTCTTCTACTG
GAAGCTTTTGGACCATGTCTACCTGATCCAAAGAGTCAGATGGAATTTGAAGCCCAAGTATTCA
AAGATCCAAATGAATTCAATGACATATGAATACCTAAATGTCTGTGTTGTCTCGAGTGCCTATA
GGCATTGGATGCAGCATGAGAAAGATGGGGCCGACTTGGGTTTCTAAAGTTACTGTTTACTCCT
GTCTTAAATGCATGCAAGCAGCTGAGAGAAGTATTATGCACATATCCCCTCTGTCCATATACAA
ATATTCAGAGGCTACTTGGGACGTTAAATCCCTTTTGTTACTACATATGTGTCAAGCTTAAGCA
AAAGAGTACTTTGTGTAAAAAAAAATGGACTATTACAAATAAATGGAATAAATTATT

hide sequence

RefSeq Acc Id:

XM_022412333 ⟹ XP_022268041

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	29	955,743 - 963,874 (-)	NCBI
Dog10K_Boxer_Tasha	29	1,382,351 - 1,390,483 (-)	NCBI

Sequence:

show sequence

CAGTAGCTGAACATCCTCAGGAAAGATGAGTTGAAGTGGCACATCTCAGAGCAAGGGAATGTGT
CTCGAGACCAAAGAGTTCCACAAAGCCAAAACGCAGTCAAGAATCCGCTCAGTTGCCGGTGGGG
TTGTGAGTTAATAAATTTGAAGTGAAATGTCTTATAGATCTTTTTTATAATTTGATGGGAGAAG
TAACAGAGCGGCAAGGTATCACCATTGGACTAGATCGCAATGCATTTCGAAACATCCTGCACAT
GACATTTGGAATGACAGACGATATGATTATGGACAGAGTATTCCGAGGTTTTGATGAGGACAAC
GATGGTTATGTAAACGTATCAGAGTGGATTTATGGATTATCAGTATTTCTTCGAGGAACTTTGG
AAGAAAAAATGAAATATTGCTTTGAAGTGTTTGATTTGAATGGTGATGGATTCATTTCAAAGGA
GGAAATGTTCCATATGTTGAAGAACAGCCTTCTCAAACAGCCATCTGAAGAAGACCCTGATGAA
GGAATTAAAGATTTGGTTGAAATAACACTTAAAAAAATGGACCATGACCATGATGGGAAGCTGT
CTTTCACAGACTATGAACAGGCTGTGAGAGAAGAGACTCTTCTACTGGAAGCTTTTGGACCATG
TCTACCTGATCCAAAGAGTCAGATGGAATTTGAAGCCCAAGTATTCAAAGATCCAAATGAATTC
AATGACATATGAATACCTAAATGTCTGTGTTGTCTCGAGTGAGTAAAAAAGGAGGTGCATGTG

hide sequence

RefSeq Acc Id:

XM_038441133 ⟹ XP_038297061

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	29	1,012,098 - 1,020,746 (-)	NCBI

RefSeq Acc Id:

XM_038441134 ⟹ XP_038297062

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	29	1,006,914 - 1,020,746 (-)	NCBI

RefSeq Acc Id:

XM_038441135 ⟹ XP_038297063

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	29	1,008,210 - 1,020,746 (-)	NCBI

RefSeq Acc Id:

XM_038441136 ⟹ XP_038297064

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	29	1,010,646 - 1,020,746 (-)	NCBI

RefSeq Acc Id:

XM_038441137 ⟹ XP_038297065

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	29	1,012,098 - 1,020,224 (-)	NCBI

RefSeq Acc Id:

XM_038441138 ⟹ XP_038297066

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	29	1,012,098 - 1,020,746 (-)	NCBI

RefSeq Acc Id:

XM_038515701 ⟹ XP_038371629

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	29	953,851 - 962,492 (-)	NCBI

RefSeq Acc Id:

XM_038515702 ⟹ XP_038371630

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	29	948,667 - 962,492 (-)	NCBI

RefSeq Acc Id:

XM_038515703 ⟹ XP_038371631

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	29	949,963 - 962,492 (-)	NCBI

RefSeq Acc Id:

XM_038515704 ⟹ XP_038371632

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	29	952,399 - 962,492 (-)	NCBI

RefSeq Acc Id:

XM_038515705 ⟹ XP_038371633

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	29	953,851 - 961,971 (-)	NCBI

RefSeq Acc Id:

XM_038515706 ⟹ XP_038371634

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	29	953,851 - 962,492 (-)	NCBI

RefSeq Acc Id:

XM_038579265 ⟹ XP_038435193

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	29	1,217,433 - 1,226,090 (-)	NCBI

RefSeq Acc Id:

XM_038579266 ⟹ XP_038435194

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	29	1,212,245 - 1,226,090 (-)	NCBI

RefSeq Acc Id:

XM_038579267 ⟹ XP_038435195

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	29	1,213,541 - 1,226,090 (-)	NCBI

RefSeq Acc Id:

XM_038579268 ⟹ XP_038435196

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	29	1,215,977 - 1,226,090 (-)	NCBI

RefSeq Acc Id:

XM_038579269 ⟹ XP_038435197

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	29	1,217,433 - 1,225,568 (-)	NCBI

RefSeq Acc Id:

XM_038579270 ⟹ XP_038435198

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	29	1,217,433 - 1,226,090 (-)	NCBI

RefSeq Acc Id:

XM_038643505 ⟹ XP_038499433

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	29	1,179,962 - 1,188,555 (-)	NCBI

RefSeq Acc Id:

XM_038643506 ⟹ XP_038499434

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	29	1,174,778 - 1,188,555 (-)	NCBI

RefSeq Acc Id:

XM_038643507 ⟹ XP_038499435

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	29	1,176,073 - 1,188,555 (-)	NCBI

RefSeq Acc Id:

XM_038643508 ⟹ XP_038499436

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	29	1,178,510 - 1,188,555 (-)	NCBI

RefSeq Acc Id:

XM_038643509 ⟹ XP_038499437

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	29	1,179,962 - 1,188,053 (-)	NCBI

RefSeq Acc Id:

XM_038643510 ⟹ XP_038499438

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	29	1,179,962 - 1,188,555 (-)	NCBI

RefSeq Acc Id:

XM_535064 ⟹ XP_535064

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	29	955,743 - 964,424 (-)	NCBI
Dog10K_Boxer_Tasha	29	1,382,351 - 1,391,005 (-)	NCBI

Sequence:

show sequence

CCGCGCCCGCGTGCGTGGGGTCCCGACCGGCGAGGGTCCGCTCGGCCGCGCGCCCCTGGGCCCC
CGCCGCCGCCGCCGCCCGCGCCCAGCCGGCATGAACCGCAAGAAGCTGCAGAAGCTGACGGACA
CCTTGACCAAAAATTGCAAGAACTTTAATAAATTTGAAGTGAAATGTCTTATAGATCTTTTTTA
TAATTTGATGGGAGAAGTAACAGAGCGGCAAGGTATCACCATTGGACTAGATCGCAATGCATTT
CGAAACATCCTGCACATGACATTTGGAATGACAGACGATATGATTATGGACAGAGTATTCCGAG
GTTTTGATGAGGACAACGATGGTTATGTAAACGTATCAGAGTGGATTTATGGATTATCAGTATT
TCTTCGAGGAACTTTGGAAGAAAAAATGAAATATTGCTTTGAAGTGTTTGATTTGAATGGTGAT
GGATTCATTTCAAAGGAGGAAATGTTCCATATGTTGAAGAACAGCCTTCTCAAACAGCCATCTG
AAGAAGACCCTGATGAAGGAATTAAAGATTTGGTTGAAATAACACTTAAAAAAATGGACCATGA
CCATGATGGGAAGCTGTCTTTCACAGACTATGAACAGGCTGTGAGAGAAGAGACTCTTCTACTG
GAAGCTTTTGGACCATGTCTACCTGATCCAAAGAGTCAGATGGAATTTGAAGCCCAAGTATTCA
AAGATCCAAATGAATTCAATGACATATGAATACCTAAATGTCTGTGTTGTCTCGAGTGAGTAAA
AAAGGAGGTGCATGTG

hide sequence

RefSeq Acc Id:

XR_002620913

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	29	941,821 - 964,424 (-)	NCBI
Dog10K_Boxer_Tasha	29	1,368,435 - 1,391,005 (-)	NCBI

Sequence:

show sequence

CCGCGCCCGCGTGCGTGGGGTCCCGACCGGCGAGGGTCCGCTCGGCCGCGCGCCCCTGGGCCCC
CGCCGCCGCCGCCGCCCGCGCCCAGCCGGCATGAACCGCAAGAAGCTGCAGAAGCTGACGGACA
CCTTGACCAAAAATTGCAAGAACTTTAATAAATTTGAAGTGAAATGTCTTATAGATCTTTTTTA
TAATTTGATGGGAGAAGTAACAGAGCGGCAAGGTATCACCATTGGACTAGATCGCAATGCATTT
CGAAACATCCTGCACATGACATTTGGAATGACAGACGATATGATTATGGACAGAGTATTCCGAG
GTTTTGATGAGGACAACGATGGTTATGTAAACGTATCAGAGTGGATTTATGGATTATCAGTATT
TCTTCGAGGAACTTTGGAAGAAAAAATGAAATATTGCTTTGAAGTGTTTGATTTGAATGGTGAT
GGATTCATTTCAAAGGAGGAAATGTTCCATATGTTGAAGAACAGCCTTCTCAAACAGCCATCTG
AAGAAGACCCTGATGAAGGAATTAAAGATTTGGTTGAAATAACACTTAAAAAAATGGACCATGA
CCATGATGGGAAGCTGTCTTTCACAGACTATGAACAGGCTGTGAGAGAAGAGACTCTTCTACTG
GAAGCTTTTGGACCATGTCTACCTGATCCAAAGAGTCAGATGGAATTTGAAGCCCAAGTATTCA
AAGATCCAAATGAATTCAATGACATATGAATACCTAAATGTCTGTGTTGTCTCGAGTCATCTTG
GGTGATGTCAAAGAAAGATGTCTCTCTGAAGAAGAAGATGCCAATGATGAGAGGCCATGATCCA
GTGGTGAACACCAGAAATTGATGTAGCCCTTCCTGGTGCCAATAACTGGCCCAAGGATGCTAGC
CATGTTATTACAGAAAATCAAGAGTCAGAGAGAAGAGAGACAACCTCCCTTGCAGAGTGTGTTG
AGAAGTCAGTGGCGTGGAGGAGCTATCATCAGGGCAAAGCAGGATGTGGAACAGGCCAGGGCCT
GCACACCCAGCACGAGATGATCTCTACCCTTGAACATTTCTGGTTATTTCATGGAAGGTGATGG
GAAAATAGCCTCCACATTGGACTCAGAAAATAAAGATCACCCACTGGTGTATACATACACAACT
GAAACCCATGTATGTCACATTGTTTTGATCCTTGGAAAACTATTAAAGATGGGAGCTGATGAGC
AGCAGGATGGATGAAGAAAATCAAGAGTCAGAGAGAAGAGAGACAACCTCCCTTGCAGAGTGTG
TTGAGAAGTCAGTGGCGTGGAGGAGCTATCATCAGGGCAAAGCAGGATGTGGAACAGGCCAGGG
CCTGCACACCCAGCACGAG

hide sequence

RefSeq Acc Id:

XR_002620914

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	29	941,821 - 964,424 (-)	NCBI
Dog10K_Boxer_Tasha	29	1,368,435 - 1,391,005 (-)	NCBI

Sequence:

show sequence

CCGCGCCCGCGTGCGTGGGGTCCCGACCGGCGAGGGTCCGCTCGGCCGCGCGCCCCTGGGCCCC
CGCCGCCGCCGCCGCCCGCGCCCAGCCGGCATGAACCGCAAGAAGCTGCAGAAGCTGACGGACA
CCTTGACCAAAAATTGCAAGAACTTTAATAAATTTGAAGTGAAATGTCTTATAGATCTTTTTTA
TAATTTGATGGGAGAAGTAACAGAGCGGCAAGGTATCACCATTGGACTAGATCGCAATGCATTT
CGAAACATCCTGCACATGACATTTGGAATGACAGACGATATGATTATGGACAGAGTATTCCGAG
GTTTTGATGAGGACAACGATGGTTATGTAAACGTATCAGAGTGGATTTATGGATTATCAGTATT
TCTTCGAGGAACTTTGGAAGAAAAAATGAAATATTGCTTTGAAGTGTTTGATTTGAATGGTGAT
GGATTCATTTCAAAGGAGGAAATGTTCCATATGTTGAAGAACAGCCTTCTCAAACAGCCATCTG
AAGAAGACCCTGATGAAGGAATTAAAGATTTGGTTGAAATAACACTTAAAAAAATGGACCATGA
CCATGATGGGAAGCTGTCTTTCACAGACTATGAACAGGCTGTGAGAGAAGAGACTCTTCTACTG
GAAGCTTTTGGACCATGTCTACCTGATCCAAAGAGTCAGATGGAATTTGAAGCCCAAGTATTCA
AAGATCCAAATGAATTCAATGACATATGAATACCTAAATGTCTGTGTTGTCTCGAGTCATCTTG
GGTGATGTCAAAGAAAGATGTCTCTCTGAAGAAGAAGATGCCAATGATGAGAGGCCATGATCCA
GTGGTGAACACCAGAAATTGATGTAGCCCTTCCTGGTGCCAATAACTGGCCCAAGGATGCTAGA
AAATCAAGAGTCAGAGAGAAGAGAGACAACCTCCCTTGCAGAGTGTGTTGAGAAGTCAGTGGCG
TGGAGGAGCTATCATCAGGGCAAAGCAGGATGTGGAACAGGCCAGGGCCTGCACACCCAGCACG
AGATGATCTCTACCCTTGAACATTTCTGGTTATTTCATGGAAGGTGATGGGAAAATAGCCTCCA
CATTGGACTCAGAAAATAAAGATCACCCACTGGTGTATACATACACAACTGAAACCCATGTATG
TCACATTGTTTTGATCCTTGGAAAACTATTAAAGATGGGAGCTGATGAGCAGCAGGATGGATGA
AGAAAATCAAGAGTCAGAGAGAAGAGAGACAACCTCCCTTGCAGAGTGTGTTGAGAAGTCAGTG
GCGTGGAGGAGCTATCATCAGGGCAAAGCAGGATGTGGAACAGGCCAGGGCCTGCACACCCAGC
ACGAG

hide sequence

RefSeq Acc Id:

XR_002620915

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	29	941,821 - 964,424 (-)	NCBI
Dog10K_Boxer_Tasha	29	1,368,435 - 1,391,005 (-)	NCBI

Sequence:

show sequence

CCGCGCCCGCGTGCGTGGGGTCCCGACCGGCGAGGGTCCGCTCGGCCGCGCGCCCCTGGGCCCC
CGCCGCCGCCGCCGCCCGCGCCCAGCCGGCATGAACCGCAAGAAGCTGCAGAAGCTGACGGACA
CCTTGACCAAAAATTGCAAGAACTTTAATAAATTTGAAGTGAAATGTCTTATAGATCTTTTTTA
TAATTTGATGGGAGAAGTAACAGAGCGGCAAGGTATCACCATTGGACTAGATCGCAATGCATTT
CGAAACATCCTGCACATGACATTTGGAATGACAGACGATATGATTATGGACAGAGTATTCCGAG
GTTTTGATGAGGACAACGATGGTTATGTAAACGTATCAGAGTGGATTTATGGATTATCAGTATT
TCTTCGAGGAACTTTGGAAGAAAAAATGAAATATTGCTTTGAAGTGTTTGATTTGAATGGTGAT
GGATTCATTTCAAAGGAGGAAATGTTCCATATGTTGAAGAACAGCCTTCTCAAACAGCCATCTG
AAGAAGACCCTGATGAAGGAATTAAAGATTTGGTTGAAATAACACTTAAAAAAATGGACCATGA
CCATGATGGGAAGCTGTCTTTCACAGACTATGAACAGGCTGTGAGAGAAGAGACTCTTCTACTG
GAAGCTTTTGGACCATGTCTACCTGATCCAAAGAGTCAGATGGAATTTGAAGCCCAAGTATTCA
AAGATCCAAATGAATTCAATGACATATGAATACCTAAATGTCTGTGTTGTCTCGAGTCATCTTG
GGTGATGTCAAAGAAAGATGTCTCTCTGAAGAAGAAGATGCCAATGATGAGAGGCCATGATCCA
GTGGTGAACACCAGAAATTGATGTAGCCCTTCCTGGTGCCAATAACTGGCCCAAGGATGCTAGC
CATGTTATTACAGAAAATCAAGAGTCAGAGAGAAGAGAGACAACCTCCCTTGCAGAGTGTGTTG
AGAAGTCAGTGGCGTGGAGGAGCTATCATCAGGGCAAAGCAGGATGTGGAACAGGCCAGGGCCT
GCACACCCAGCACGAGATCACCCACTGGTGTATACATACACAACTGAAACCCATGTATGTCACA
TTGTTTTGATCCTTGGAAAACTATTAAAGATGGGAGCTGATGAGCAGCAGGATGGATGAAGAAA
ATCAAGAGTCAGAGAGAAGAGAGACAACCTCCCTTGCAGAGTGTGTTGAGAAGTCAGTGGCGTG
GAGGAGCTATCATCAGGGCAAAGCAGGATGTGGAACAGGCCAGGGCCTGCACACCCAGCACGAG

hide sequence

RefSeq Acc Id:

XR_002620916

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	29	941,821 - 964,424 (-)	NCBI
Dog10K_Boxer_Tasha	29	1,368,435 - 1,391,005 (-)	NCBI

Sequence:

show sequence

CCGCGCCCGCGTGCGTGGGGTCCCGACCGGCGAGGGTCCGCTCGGCCGCGCGCCCCTGGGCCCC
CGCCGCCGCCGCCGCCCGCGCCCAGCCGGCATGAACCGCAAGAAGCTGCAGAAGCTGACGGACA
CCTTGACCAAAAATTGCAAGAACTTTAATAAATTTGAAGTGAAATGTCTTATAGATCTTTTTTA
TAATTTGATGGGAGAAGTAACAGAGCGGCAAGGTATCACCATTGGACTAGATCGCAATGCATTT
CGAAACATCCTGCACATGACATTTGGAATGACAGACGATATGATTATGGACAGAGTATTCCGAG
GTTTTGATGAGGACAACGATGGTTATGTAAACGTATCAGAGTGGATTTATGGATTATCAGTATT
TCTTCGAGGAACTTTGGAAGAAAAAATGAAATATTGCTTTGAAGTGTTTGATTTGAATGGTGAT
GGATTCATTTCAAAGGAGGAAATGTTCCATATGTTGAAGAACAGCCTTCTCAAACAGCCATCTG
AAGAAGACCCTGATGAAGGAATTAAAGATTTGGTTGAAATAACACTTAAAAAAATGGACCATGA
CCATGATGGGAAGCTGTCTTTCACAGACTATGAACAGGCTGTGAGAGAAGAGACTCTTCTACTG
GAAGCTTTTGGACCATGTCTACCTGATCCAAAGAGTCAGATGGAATTTGAAGCCCAAGTATTCA
AAGATCCAAATGAATTCAATGACATATGAATACCTAAATGTCTGTGTTGTCTCGAGTCATCTTG
GGTGATGTCAAAGAAAGATGTCTCTCTGAAGAAGAAGATGCCAATGATGAGAGGCCATGATCCA
GTGGTGAACACCAGAAATTGATGTAGCCCTTCCTGGTGCCAATAACTGGCCCAAGGATGCTAGA
TGATCTCTACCCTTGAACATTTCTGGTTATTTCATGGAAGGTGATGGGAAAATAGCCTCCACAT
TGGACTCAGAAAATAAAGATCACCCACTGGTGTATACATACACAACTGAAACCCATGTATGTCA
CATTGTTTTGATCCTTGGAAAACTATTAAAGATGGGAGCTGATGAGCAGCAGGATGGATGAAGA
AAATCAAGAGTCAGAGAGAAGAGAGACAACCTCCCTTGCAGAGTGTGTTGAGAAGTCAGTGGCG
TGGAGGAGCTATCATCAGGGCAAAGCAGGATGTGGAACAGGCCAGGGCCTGCACACCCAGCACG
AG

hide sequence

RefSeq Acc Id:

XR_005304116

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	29	998,111 - 1,020,746 (-)	NCBI

RefSeq Acc Id:

XR_005304117

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	29	998,111 - 1,020,746 (-)	NCBI

RefSeq Acc Id:

XR_005304118

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	29	998,111 - 1,020,746 (-)	NCBI

RefSeq Acc Id:

XR_005304119

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	29	998,111 - 1,020,746 (-)	NCBI

RefSeq Acc Id:

XR_005304120

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	29	998,111 - 1,020,746 (-)	NCBI

RefSeq Acc Id:

XR_005316109

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	29	1,368,435 - 1,391,005 (-)	NCBI

RefSeq Acc Id:

XR_005347174

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	29	939,944 - 962,492 (-)	NCBI

RefSeq Acc Id:

XR_005347175

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	29	939,944 - 962,492 (-)	NCBI

RefSeq Acc Id:

XR_005347176

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	29	939,944 - 962,492 (-)	NCBI

RefSeq Acc Id:

XR_005347177

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	29	939,944 - 962,492 (-)	NCBI

RefSeq Acc Id:

XR_005347178

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	29	939,944 - 962,492 (-)	NCBI

RefSeq Acc Id:

XR_005380934

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	29	1,203,459 - 1,226,090 (-)	NCBI

RefSeq Acc Id:

XR_005380935

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	29	1,203,459 - 1,226,090 (-)	NCBI

RefSeq Acc Id:

XR_005380936

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	29	1,203,459 - 1,226,090 (-)	NCBI

RefSeq Acc Id:

XR_005380937

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	29	1,203,459 - 1,226,090 (-)	NCBI

RefSeq Acc Id:

XR_005380938

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	29	1,203,459 - 1,226,090 (-)	NCBI

RefSeq Acc Id:

XR_005414730

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	29	1,166,038 - 1,188,555 (-)	NCBI

RefSeq Acc Id:

XR_005414731

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	29	1,166,038 - 1,188,555 (-)	NCBI

RefSeq Acc Id:

XR_005414732

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	29	1,166,038 - 1,188,555 (-)	NCBI

RefSeq Acc Id:

XR_005414733

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	29	1,166,038 - 1,188,555 (-)	NCBI

RefSeq Acc Id:

XR_005414734

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	29	1,166,038 - 1,188,555 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005638013	(Get FASTA)	NCBI Sequence Viewer
	XP_013964798	(Get FASTA)	NCBI Sequence Viewer
	XP_022268039	(Get FASTA)	NCBI Sequence Viewer
	XP_022268040	(Get FASTA)	NCBI Sequence Viewer
	XP_022268041	(Get FASTA)	NCBI Sequence Viewer
	XP_038297061	(Get FASTA)	NCBI Sequence Viewer
	XP_038297062	(Get FASTA)	NCBI Sequence Viewer
	XP_038297063	(Get FASTA)	NCBI Sequence Viewer
	XP_038297064	(Get FASTA)	NCBI Sequence Viewer
	XP_038297065	(Get FASTA)	NCBI Sequence Viewer
	XP_038297066	(Get FASTA)	NCBI Sequence Viewer
	XP_038371629	(Get FASTA)	NCBI Sequence Viewer
	XP_038371630	(Get FASTA)	NCBI Sequence Viewer
	XP_038371631	(Get FASTA)	NCBI Sequence Viewer
	XP_038371632	(Get FASTA)	NCBI Sequence Viewer
	XP_038371633	(Get FASTA)	NCBI Sequence Viewer
	XP_038371634	(Get FASTA)	NCBI Sequence Viewer
	XP_038435193	(Get FASTA)	NCBI Sequence Viewer
	XP_038435194	(Get FASTA)	NCBI Sequence Viewer
	XP_038435195	(Get FASTA)	NCBI Sequence Viewer
	XP_038435196	(Get FASTA)	NCBI Sequence Viewer
	XP_038435197	(Get FASTA)	NCBI Sequence Viewer
	XP_038435198	(Get FASTA)	NCBI Sequence Viewer
	XP_038499433	(Get FASTA)	NCBI Sequence Viewer
	XP_038499434	(Get FASTA)	NCBI Sequence Viewer
	XP_038499435	(Get FASTA)	NCBI Sequence Viewer
	XP_038499436	(Get FASTA)	NCBI Sequence Viewer
	XP_038499437	(Get FASTA)	NCBI Sequence Viewer
	XP_038499438	(Get FASTA)	NCBI Sequence Viewer
	XP_535064	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000009907.3
	ENSCAFP00000051176.1
	ENSCAFP00040036161.1
	ENSCAFP00040036173.1
	ENSCAFP00845039412.1
	ENSCAFP00845039434.1

RefSeq Acc Id:	XP_005638013 ⟸ XM_005637956
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KRW3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNRKKLQKLTDTLTKNCKNFNKFEVKCLIDLFYNLMGEVTERQGITIGLDRNAFRNILHMTFGM TDDMIMDRVFRGFDEDNDGYVNVSEWIYGLSVFLRGTLEEKMKYCFEVFDLNGDGFISKEEMFH MLKNSLLKQPSEEDPDEGIKDLVEITLKKMDHDHDGKLSFTDYEQAVREETLLLEAFGPCLPDP KSQMEFEAQVFKDPNEFNDI hide sequence

RefSeq Acc Id:	XP_013964798 ⟸ XM_014109323
- Peptide Label:	isoform X3
- Sequence:	show sequence MNRKKLQKLTDTLTKNCKNFNKFEVKCLIDLFYNLMGEVTERQGITIGLDRNAFRNILHMTFGM TDDMIMDRDCFEVFDLNGDGFISKEEMFHMLKNSLLKQPSEEDPDEGIKDLVEITLKKMDHDHD GKLSFTDYEQAVREETLLLEAFGPCLPDPKSQMEFEAQVFKDPNEFNDI hide sequence

RefSeq Acc Id:	XP_535064 ⟸ XM_535064
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KRW3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNRKKLQKLTDTLTKNCKNFNKFEVKCLIDLFYNLMGEVTERQGITIGLDRNAFRNILHMTFGM TDDMIMDRVFRGFDEDNDGYVNVSEWIYGLSVFLRGTLEEKMKYCFEVFDLNGDGFISKEEMFH MLKNSLLKQPSEEDPDEGIKDLVEITLKKMDHDHDGKLSFTDYEQAVREETLLLEAFGPCLPDP KSQMEFEAQVFKDPNEFNDI hide sequence

RefSeq Acc Id:	XP_022268039 ⟸ XM_022412331
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KRW3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNRKKLQKLTDTLTKNCKNFNKFEVKCLIDLFYNLMGEVTERQGITIGLDRNAFRNILHMTFGM TDDMIMDRVFRGFDEDNDGYVNVSEWIYGLSVFLRGTLEEKMKYCFEVFDLNGDGFISKEEMFH MLKNSLLKQPSEEDPDEGIKDLVEITLKKMDHDHDGKLSFTDYEQAVREETLLLEAFGPCLPDP KSQMEFEAQVFKDPNEFNDI hide sequence

RefSeq Acc Id:	XP_022268040 ⟸ XM_022412332
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KRW3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNRKKLQKLTDTLTKNCKNFNKFEVKCLIDLFYNLMGEVTERQGITIGLDRNAFRNILHMTFGM TDDMIMDRVFRGFDEDNDGYVNVSEWIYGLSVFLRGTLEEKMKYCFEVFDLNGDGFISKEEMFH MLKNSLLKQPSEEDPDEGIKDLVEITLKKMDHDHDGKLSFTDYEQAVREETLLLEAFGPCLPDP KSQMEFEAQVFKDPNEFNDI hide sequence

RefSeq Acc Id:	XP_022268041 ⟸ XM_022412333
- Peptide Label:	isoform X2
- Sequence:	show sequence MGEVTERQGITIGLDRNAFRNILHMTFGMTDDMIMDRVFRGFDEDNDGYVNVSEWIYGLSVFLR GTLEEKMKYCFEVFDLNGDGFISKEEMFHMLKNSLLKQPSEEDPDEGIKDLVEITLKKMDHDHD GKLSFTDYEQAVREETLLLEAFGPCLPDPKSQMEFEAQVFKDPNEFNDI hide sequence

RefSeq Acc Id:

ENSCAFP00000051176 ⟸ ENSCAFT00000080047

RefSeq Acc Id:

ENSCAFP00000009907 ⟸ ENSCAFT00000010686

RefSeq Acc Id:	XP_038371630 ⟸ XM_038515702
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038371631 ⟸ XM_038515703
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038371632 ⟸ XM_038515704
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038371634 ⟸ XM_038515706
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038371629 ⟸ XM_038515701
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038371633 ⟸ XM_038515705
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038499434 ⟸ XM_038643506
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038499435 ⟸ XM_038643507
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038499436 ⟸ XM_038643508
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038499438 ⟸ XM_038643510
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038499433 ⟸ XM_038643505
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038499437 ⟸ XM_038643509
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038297062 ⟸ XM_038441134
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KRW3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038297063 ⟸ XM_038441135
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KRW3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038297064 ⟸ XM_038441136
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KRW3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038297066 ⟸ XM_038441138
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038297061 ⟸ XM_038441133
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KRW3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038297065 ⟸ XM_038441137
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038435194 ⟸ XM_038579266
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KRW3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038435195 ⟸ XM_038579267
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KRW3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038435196 ⟸ XM_038579268
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KRW3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038435198 ⟸ XM_038579270
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038435193 ⟸ XM_038579265
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KRW3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038435197 ⟸ XM_038579269
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSCAFP00845039434 ⟸ ENSCAFT00845050301

RefSeq Acc Id:

ENSCAFP00845039412 ⟸ ENSCAFT00845050275

Protein Domains

EF-hand

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000006629	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00040022314	UniProtKB/TrEMBL
	ENSCAFG00845028482	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000010686.5	UniProtKB/TrEMBL
	ENSCAFT00000080047.2	UniProtKB/TrEMBL
	ENSCAFT00040041454.1	UniProtKB/TrEMBL
	ENSCAFT00040041467.1	UniProtKB/TrEMBL
	ENSCAFT00845050275.1	UniProtKB/TrEMBL
	ENSCAFT00845050301.1	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
	Recoverin	UniProtKB/TrEMBL
NCBI Gene	EFCAB1	ENTREZGENE
PANTHER	EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	PTHR23055	UniProtKB/TrEMBL
Pfam	EF-hand_7	UniProtKB/TrEMBL
	EF-hand_8	UniProtKB/TrEMBL
PRINTS	RECOVERIN	UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
SMART	EFh	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	A0A8C0KRW3	ENTREZGENE
	A0A8C0TH49_CANLF	UniProtKB/TrEMBL
	A0A8C0TH56_CANLF	UniProtKB/TrEMBL
	A0A8I3PYT0_CANLF	UniProtKB/TrEMBL
	A0A8I3Q0T7_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:54111	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-12-06	CLXN	calaxin	EFCAB1	EF-hand calcium binding domain 1	Symbol and/or name change	19259463	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM