TEKT1 (tektin 1) - Rat Genome Database

Name: TEKT1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: TEKT1 (tektin 1) Canis lupus familiaris

Analyze

Symbol:

TEKT1

Name:

tektin 1

RGD ID:

12379613

Description:

INVOLVED IN cilium assembly (inferred); cilium movement involved in cell motility (inferred); flagellated sperm motility (inferred); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); developmental and epileptic encephalopathy 25 (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); axonemal microtubule (ortholog)

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

tektin-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TEKT1 (tektin 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tekt1 (tektin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Tekt1 (tektin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tekt1 (tektin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TEKT1 (tektin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tekt1 (tektin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TEKT1 (tektin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TEKT1 (tektin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tekt1 (tektin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	30,600,983 - 30,614,679 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	30,565,639 - 30,614,673 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
ROS_Cfam_1.0	5	30,702,285 - 30,716,037 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	30,702,697 - 30,716,581 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	30,668,771 - 30,682,373 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	30,627,225 - 30,640,929 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	30,800,692 - 30,814,062 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

common variable immunodeficiency (ISO)

congenital myasthenic syndrome 2A (ISO)

developmental and epileptic encephalopathy 25 (ISO)

dyskeratosis congenita (ISO)

genetic disease (ISO)

very long chain acyl-CoA dehydrogenase deficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cilium assembly (IBA,IEA)

cilium movement involved in cell motility (IBA,IEA)

flagellated sperm motility (IEA)

Cellular Component

axonemal A tubule inner sheath (IEA,ISO)

axonemal microtubule (ISS)

cytoplasm (IEA)

cytoskeleton (IEA)

microtubule (IEA)

microtubule cytoskeleton (IBA,IEA)

motile cilium (IEA)

nucleus (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:11039601	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

TEKT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	30,600,983 - 30,614,679 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	30,565,639 - 30,614,673 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
ROS_Cfam_1.0	5	30,702,285 - 30,716,037 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	30,702,697 - 30,716,581 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	30,668,771 - 30,682,373 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	30,627,225 - 30,640,929 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	30,800,692 - 30,814,062 (+)	NCBI		UU_Cfam_GSD_1.0

TEKT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	6,797,993 - 6,831,729 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	6,789,133 - 6,831,761 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	6,701,312 - 6,735,048 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	6,644,024 - 6,675,784 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	6,644,024 - 6,675,784	NCBI
Celera	17	6,729,093 - 6,760,865 (-)	NCBI		Celera
Cytogenetic Map	17	p13.1	NCBI
HuRef	17	6,598,870 - 6,630,626 (-)	NCBI		HuRef
CHM1_1	17	6,713,517 - 6,745,273 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	6,698,681 - 6,732,423 (-)	NCBI		T2T-CHM13v2.0

Tekt1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	72,235,543 - 72,253,268 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	72,235,548 - 72,253,268 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	72,344,717 - 72,362,442 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	72,344,722 - 72,362,442 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	72,158,222 - 72,175,382 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	72,160,917 - 72,178,068 (-)	NCBI		MGSCv36	mm8
Celera	11	79,864,978 - 79,882,394 (-)	NCBI		Celera
Cytogenetic Map	11	B4	NCBI
cM Map	11	44.03	NCBI

Tekt1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	57,450,712 - 57,479,121 (-)	NCBI		GRCr8
mRatBN7.2	10	56,952,164 - 56,980,572 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	56,952,167 - 56,980,572 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	61,615,143 - 61,643,556 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	61,103,620 - 61,132,042 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	56,602,709 - 56,631,121 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	58,895,689 - 58,924,098 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	58,895,674 - 58,924,137 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	58,636,233 - 58,663,145 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	59,219,929 - 59,248,976 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	59,233,552 - 59,262,599 (-)	NCBI
Celera	10	56,081,049 - 56,108,364 (-)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

Tekt1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955467	12,276,702 - 12,301,630 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955467	12,278,515 - 12,301,736 (-)	NCBI	ChiLan1.0	ChiLan1.0

TEKT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	14,387,356 - 14,427,539 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	16,353,555 - 16,393,737 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	6,830,517 - 6,862,596 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	6,819,230 - 6,851,014 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	6,819,230 - 6,851,014 (-)	Ensembl	panpan1.1		panPan2

Tekt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	54,683,936 - 54,697,449 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936677	1,195,280 - 1,216,960 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936677	1,195,283 - 1,216,993 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TEKT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	50,526,193 - 50,580,552 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	50,526,188 - 50,552,083 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	52,524,664 - 52,548,893 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TEKT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	6,161,826 - 6,184,735 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	6,159,008 - 6,184,711 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	15,254,603 - 15,277,787 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tekt1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624786	7,218,590 - 7,249,538 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624786	7,218,533 - 7,248,593 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in TEKT1
220 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium		3	6		1		6	6	12			1
Low	5	2	14	6	5	6				8	10	5
Below cutoff			2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001003097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014113168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014113169	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014113170	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022418005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038664058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038664059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038664060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF191546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00845003523 ⟹ ENSCAFP00845002797

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	5	30,702,697 - 30,716,581 (+)	Ensembl

RefSeq Acc Id:

NM_001003097 ⟹ NP_001003097

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	30,601,367 - 30,614,673 (+)	NCBI
ROS_Cfam_1.0	5	30,702,661 - 30,716,031 (+)	NCBI
UMICH_Zoey_3.1	5	30,668,771 - 30,682,373 (+)	NCBI
UNSW_CanFamBas_1.0	5	30,627,225 - 30,640,929 (+)	NCBI
UU_Cfam_GSD_1.0	5	30,800,692 - 30,814,062 (+)	NCBI

Sequence:

show sequence

GGAGACGCGCGGTTTACCCGCCGGGTCTGCGGGGGCCGCAGCTGCAGGTGGGGTGCGAACCTGT
GTTCAGCGGTTCCCGAAGGCGCCACGGCTAGTGCAGGCGGCCCACTCTCTGACCCCCTGCCTGG
AACCCCGGCCAGCCCCCGCCGGCCTCCTCTCCACCTCCCCTGGGCTGCTCGGGACTTTGGAAAG
CAGAAATGGCCAAACTCCTCCAACCTCCACCCAAGTTCTTGCCTGAAGAGTGGCACATCGCTAA
CAAGAACCAGTACCACAGAGCAGAGGCTCAAAGGTCCCGGTCCGAACGCCTGGTGGCAGAAAGC
CAGAGGCTTGTGGATGAGATTGAAAAGACCACAAGAAAGTCTCAGAGCGATGTAAACAAGAAAC
TAGAACAGAGACTCGAGGAAGTCAGGTTCTGGAAGAAGGAGCTGGATGACAAGCTGGAGCAGCT
AGTGTGCACCACAGAGGACCTGCTCACTTATCAGACTAGGCTGCAGAACGCCCTGGAGAGCCTG
AAGGAGCCCCTGCACATCACCCAGATGTGCCTGGAATACAGGGACAAGCGCATTGGCATCGACC
TGGTGCATGATGAGGTGGAACAGGAGCTGCTGAAGGAGGCTGAGGTCATCCACGGGGTCATGGC
CCTGCTGACCCGCACCTTGGATGAGGTGACTGAGCAGATCAGGCTGAACCGCTCCGCCAAGTAC
AACCTAGAGAAGGATTTGAAGGACAAGTTTGTGGCCTTGACCATCGACGATGTTTGCTTCTCCC
TCAACAACAACTCCCCAGGCATCTACTACTCGGACAGTGTTGTGAGAGTTGAGCCACACTCCGT
GAGTCTGGAGGACTGGCTGGACTTCTCCAACACCAATGTGGAGAAGGCGAACAGGCAGAGAAAC
AACTCCCTGGCGCTGAAGGCCCTGGTGGACCGGATCCTGTCCCAGACAGCTGACGACCTGCGCA
GGCAGTGTGACATGGTGGACACGGCATTCCAGATGGGGCTGAAGGAGACCAAGGCCGCCAGGGA
CCAGCTGGCTGCCCACCTGGCCAAGGTCATGGAAGAGATCGCATGCCAGGAGAAGAACATGACG
GTTCTGGAGAAGGCCATCCTTGATCAAGAGGGGCCTGCCAAGGTGGCTCACACGCGCCTGGAGA
CCCGAACACGCAGGCCCAACGTAGAGCTGTGCCGCGATGTCGCACAGTACCGGCTGGTCAAGGA
AGTCGGCGAGATTGCCCAGAATGTCGGAAGGCTGAAGGAGGCCCTGGCACAGGCGCAGGTGGAG
CTGAAGGGCCTGAACCGCCGGCAACTGGCGCTGCAGGAGGAAGTCCAGGTCAAGGAGAACACCA
TCTACATCGACGAGGTGCTCTGCACCCACATGAGGAAGTCCATCCCCCTGCGGGATGGGGGCGA
CCAAGGCCAGTGGGCCAGGGGCCTGCGCCCCGACACCATCTGCTGAGGATGGCACTTCACACAC
TGATTAAACCCTGGTCACCGTC

hide sequence

RefSeq Acc Id:

XM_038664058 ⟹ XP_038519986

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	5	30,702,700 - 30,716,037 (+)	NCBI

RefSeq Acc Id:

XM_038664059 ⟹ XP_038519987

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	5	30,702,285 - 30,716,037 (+)	NCBI

RefSeq Acc Id:

XM_038664060 ⟹ XP_038519988

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	5	30,702,689 - 30,716,037 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001003097	(Get FASTA)	NCBI Sequence Viewer
	XP_038519986	(Get FASTA)	NCBI Sequence Viewer
	XP_038519987	(Get FASTA)	NCBI Sequence Viewer
	XP_038519988	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF05716	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000022544.5
	ENSCAFP00030030213.1
	ENSCAFP00030030260.1
	ENSCAFP00040000417.1
	ENSCAFP00040000460.1
	ENSCAFP00845002797
	ENSCAFP00845002797.1
GenBank Protein	Q9TTW3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001003097 ⟸ NM_001003097

- UniProtKB:

A0A8C0R1X9 (UniProtKB/TrEMBL), A0A8C0RUM1 (UniProtKB/TrEMBL), A0A8I3MF23 (UniProtKB/TrEMBL), A0A8C0NRK6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAKLLQPPPKFLPEEWHIANKNQYHRAEAQRSRSERLVAESQRLVDEIEKTTRKSQSDVNKKLE
QRLEEVRFWKKELDDKLEQLVCTTEDLLTYQTRLQNALESLKEPLHITQMCLEYRDKRIGIDLV
HDEVEQELLKEAEVIHGVMALLTRTLDEVTEQIRLNRSAKYNLEKDLKDKFVALTIDDVCFSLN
NNSPGIYYSDSVVRVEPHSVSLEDWLDFSNTNVEKANRQRNNSLALKALVDRILSQTADDLRRQ
CDMVDTAFQMGLKETKAARDQLAAHLAKVMEEIACQEKNMTVLEKAILDQEGPAKVAHTRLETR
TRRPNVELCRDVAQYRLVKEVGEIAQNVGRLKEALAQAQVELKGLNRRQLALQEEVQVKENTIY
IDEVLCTHMRKSIPLRDGGDQGQWARGLRPDTIC

hide sequence

RefSeq Acc Id:	XP_038519987 ⟸ XM_038664059
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NRK6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038519988 ⟸ XM_038664060
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NRK6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038519986 ⟸ XM_038664058
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NRK6 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845002797 ⟸ ENSCAFT00845003523

Protein Domains

Calponin-homology (CH)

Promoters

RGD ID:

13683194

Promoter ID:

EPDNEW_C1263

Type:

single initiation site

Name:

TEKT1_1

Description:

tektin 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	30,601,309 - 30,601,369	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000015292	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030018817	UniProtKB/TrEMBL
	ENSCAFG00040000273	UniProtKB/TrEMBL
	ENSCAFG00040000330	UniProtKB/TrEMBL
	ENSCAFG00845002020	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000024286.6	UniProtKB/TrEMBL
	ENSCAFT00030034640.1	UniProtKB/TrEMBL
	ENSCAFT00030034700.1	UniProtKB/TrEMBL
	ENSCAFT00040000508.1	UniProtKB/TrEMBL
	ENSCAFT00040000557.1	UniProtKB/TrEMBL
	ENSCAFT00845003523	ENTREZGENE
	ENSCAFT00845003523.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.418.10	UniProtKB/TrEMBL
InterPro	CH-domain	UniProtKB/TrEMBL
	CH_dom_sf	UniProtKB/TrEMBL
	Tektin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Tektin-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	TEKT1	ENTREZGENE
PANTHER	CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED	UniProtKB/TrEMBL
	PTHR19960	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SMOOTHELIN-LIKE PROTEIN 2	UniProtKB/TrEMBL
	TEKTIN-1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	PF00307	UniProtKB/TrEMBL
	Tektin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS	TEKTIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	PS50021	UniProtKB/TrEMBL
SMART	SM00033	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47576	UniProtKB/TrEMBL
UniProt	A0A8C0NRK6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0Q1C5_CANLF	UniProtKB/TrEMBL
	A0A8C0R1X9	ENTREZGENE
	A0A8C0RNH3_CANLF	UniProtKB/TrEMBL
	A0A8C0RUM1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MF23	ENTREZGENE, UniProtKB/TrEMBL
	Q9TTW3	ENTREZGENE, UniProtKB/Swiss-Prot
VGNC ID	VGNC:47242	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar