DSPP (dentin sialophosphoprotein) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: DSPP (dentin sialophosphoprotein) Canis lupus familiaris
Analyze
Symbol: DSPP
Name: dentin sialophosphoprotein
RGD ID: 12376540
Description: ENCODES a protein that exhibits collagen binding (ortholog); INVOLVED IN ameloblast differentiation (ortholog); amelogenesis (ortholog); biomineral tissue development (ortholog); ASSOCIATED WITH Autosomal Dominant Deafness 39 with Dentinogenesis Imperfecta 1 (ortholog); autosomal dominant polycystic kidney disease (ortholog); dental pulp calcification (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); extracellular matrix (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13211,017,440 - 11,022,780 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3230,932,307 - 30,937,641 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03211,069,800 - 11,075,135 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3211,069,800 - 11,075,121 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13211,152,952 - 11,158,287 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03210,978,595 - 10,983,939 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03228,970,188 - 28,976,515 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
DSPP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13211,017,440 - 11,022,780 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3230,932,307 - 30,937,641 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03211,069,800 - 11,075,135 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3211,069,800 - 11,075,121 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13211,152,952 - 11,158,287 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03210,978,595 - 10,983,939 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03228,970,188 - 28,976,515 (-)NCBIUU_Cfam_GSD_1.0
DSPP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38487,608,529 - 87,616,873 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl487,608,529 - 87,616,873 (+)EnsemblGRCh38hg38GRCh38
GRCh37488,529,681 - 88,538,025 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36488,748,705 - 88,757,049 (+)NCBINCBI36Build 36hg18NCBI36
Build 34488,886,859 - 88,895,204NCBI
Celera485,818,035 - 85,826,406 (+)NCBICelera
Cytogenetic Map4q22.1NCBI
HuRef484,275,661 - 84,283,858 (+)NCBIHuRef
CHM1_1488,506,445 - 88,514,787 (+)NCBICHM1_1
T2T-CHM13v2.0490,935,096 - 90,943,283 (+)NCBIT2T-CHM13v2.0
Dspp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395104,318,569 - 104,327,993 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5104,318,578 - 104,327,993 (+)EnsemblGRCm39 Ensembl
GRCm385104,170,703 - 104,180,127 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5104,170,712 - 104,180,127 (+)EnsemblGRCm38mm10GRCm38
MGSCv375104,599,731 - 104,609,146 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365104,411,005 - 104,420,429 (+)NCBIMGSCv36mm8
Celera5101,476,457 - 101,494,758 (+)NCBICelera
Cytogenetic Map5E5NCBI
cM Map550.59NCBI
Dspp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8145,870,232 - 5,876,339 (-)NCBIGRCr8
mRatBN7.2145,565,562 - 5,571,669 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl145,565,629 - 5,571,672 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx145,534,670 - 5,540,793 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0146,834,894 - 6,841,017 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0145,533,249 - 5,539,381 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0146,926,972 - 6,933,079 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl146,926,976 - 6,933,070 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0146,914,385 - 6,920,492 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4146,674,662 - 6,680,769 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1146,674,663 - 6,680,769 (-)NCBI
Celera145,704,631 - 5,710,738 (-)NCBICelera
Cytogenetic Map14p22NCBI
Dspp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554742,254,842 - 2,259,303 (-)NCBIChiLan1.0ChiLan1.0
DSPP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2385,617,889 - 85,623,744 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1485,880,160 - 85,886,034 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0479,903,923 - 79,909,836 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1490,630,300 - 90,635,681 (+)NCBIpanpan1.1PanPan1.1panPan2
Dspp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244052852,036,925 - 2,043,572 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936905458,298 - 463,346 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936905458,062 - 463,359 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DSPP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8131,319,983 - 131,472,761 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18131,318,187 - 131,444,274 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28140,512,001 - 140,540,005 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DSPP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1735,993,669 - 35,999,443 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603714,694,483 - 14,700,534 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dspp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248724,096,001 - 4,102,392 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DSPP
78 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00845027988   ⟹   ENSCAFP00845022028
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3211,069,800 - 11,075,121 (+)Ensembl
RefSeq Acc Id: XM_003434003   ⟹   XP_003434051
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13211,017,440 - 11,022,780 (+)NCBI
Dog10K_Boxer_Tasha3230,932,307 - 30,937,641 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038444079   ⟹   XP_038300007
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03211,069,800 - 11,075,135 (+)NCBI
RefSeq Acc Id: XM_038518472   ⟹   XP_038374400
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13211,152,952 - 11,158,287 (+)NCBI
RefSeq Acc Id: XM_038582184   ⟹   XP_038438112
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03228,970,188 - 28,976,515 (-)NCBI
RefSeq Acc Id: XM_038646410   ⟹   XP_038502338
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03210,978,595 - 10,983,939 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_003434051   ⟸   XM_003434003
- Sequence:
RefSeq Acc Id: XP_038374400   ⟸   XM_038518472
RefSeq Acc Id: XP_038502338   ⟸   XM_038646410
RefSeq Acc Id: XP_038300007   ⟸   XM_038444079
- UniProtKB: A0A8I3P2A0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438112   ⟸   XM_038582184
- UniProtKB: A0A8I3P2A0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845022028   ⟸   ENSCAFT00845027988


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000044575 UniProtKB/TrEMBL
  ENSCAFG00030025924 UniProtKB/TrEMBL
  ENSCAFG00845015696 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000063924.2 UniProtKB/TrEMBL
  ENSCAFT00030047887.1 UniProtKB/TrEMBL
  ENSCAFT00845027988 ENTREZGENE
  ENSCAFT00845027988.1 UniProtKB/TrEMBL
NCBI Gene DSPP ENTREZGENE
PANTHER DENTIN SIALOPHOSPHOPROTEIN UniProtKB/TrEMBL
  DENTIN SIALOPHOSPHOPROTEIN UniProtKB/TrEMBL
UniProt A0A8C0PYM2_CANLF UniProtKB/TrEMBL
  A0A8I3P2A0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0T5Z9_CANLF UniProtKB/TrEMBL