VSTM4 (V-set and transmembrane domain containing 4) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: VSTM4 (V-set and transmembrane domain containing 4) Canis lupus familiaris
Analyze
Symbol: VSTM4 (Ensembl: TMEM273)
Name: V-set and transmembrane domain containing 4
RGD ID: 12371983
Description: INVOLVED IN endothelial cell migration (ortholog); endothelial cell proliferation (ortholog); retina blood vessel maintenance (ortholog); ASSOCIATED WITH Cockayne syndrome B (ortholog); megacolon (ortholog); schizophrenia (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-set and transmembrane domain-containing protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.128932,483 - 1,026,893 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha281,159,957 - 1,260,990 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0281,107,069 - 1,208,164 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl281,108,160 - 1,283,203 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.128905,327 - 1,006,508 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.028949,430 - 1,050,338 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0281,072,378 - 1,173,413 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
VSTM4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.128932,483 - 1,026,893 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha281,159,957 - 1,260,990 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0281,107,069 - 1,208,164 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl281,108,160 - 1,283,203 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.128905,327 - 1,006,508 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.028949,430 - 1,050,338 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0281,072,378 - 1,173,413 (-)NCBIUU_Cfam_GSD_1.0
VSTM4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381049,014,236 - 49,115,522 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1049,014,236 - 49,115,522 (-)EnsemblGRCh38hg38GRCh38
GRCh371050,222,281 - 50,323,567 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361049,896,258 - 49,993,565 (-)NCBINCBI36Build 36hg18NCBI36
Build 341049,980,222 - 49,993,560NCBI
Celera1043,807,921 - 43,909,146 (-)NCBICelera
Cytogenetic Map10q11.23NCBI
HuRef1044,558,880 - 44,588,434 (-)NCBIHuRef
HuRef1044,487,160 - 44,537,600 (-)NCBIHuRef
CHM1_11050,504,132 - 50,605,365 (-)NCBICHM1_1
T2T-CHM13v2.01049,863,442 - 49,964,410 (-)NCBIT2T-CHM13v2.0
Vstm4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391432,578,713 - 32,661,448 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1432,578,713 - 32,661,448 (+)EnsemblGRCm39 Ensembl
GRCm381432,856,756 - 32,939,491 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1432,856,756 - 32,939,491 (+)EnsemblGRCm38mm10GRCm38
MGSCv371433,669,942 - 33,752,675 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361431,685,848 - 31,768,581 (+)NCBIMGSCv36mm8
Celera1429,113,807 - 29,199,077 (+)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.4NCBI
Vstm4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8168,126,630 - 8,206,556 (+)NCBIGRCr8
mRatBN7.2168,120,336 - 8,200,272 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl168,120,336 - 8,200,269 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx168,139,159 - 8,219,133 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0169,284,061 - 9,364,032 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0168,131,723 - 8,212,459 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0169,088,142 - 9,172,855 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl169,092,302 - 9,172,888 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01611,044,275 - 11,135,821 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4168,381,247 - 8,462,917 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1168,381,244 - 8,462,915 (+)NCBI
Celera167,005,902 - 7,085,420 (-)NCBICelera
Cytogenetic Map16p16NCBI
Vstm4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555561,086,092 - 1,159,866 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555561,085,826 - 1,160,916 (+)NCBIChiLan1.0ChiLan1.0
VSTM4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2861,270,395 - 61,382,441 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11061,275,161 - 61,387,748 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01045,128,625 - 45,240,558 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
Vstm4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721379,943,949 - 80,035,472 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367281,146,680 - 1,239,773 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367281,146,800 - 1,239,264 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VSTM4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1489,650,744 - 89,739,269 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11489,650,740 - 89,739,263 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21497,445,097 - 97,533,657 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VSTM4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1942,683,887 - 42,825,924 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl942,683,950 - 42,779,480 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660482,444,783 - 2,546,260 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vstm4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624928841,527 - 924,785 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624928847,501 - 924,779 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in VSTM4
1148 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022411608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038439763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038439764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038439765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038439766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038439767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038439768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038439769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038460586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038460587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038460588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038460589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038460590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038460591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038460592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038514384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038514385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038514386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038514387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038514388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038514389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038514390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038578037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038578038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038578039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038578040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038578041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038578042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038578043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038642196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038642197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038642198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038642199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038642200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038642201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038642202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005303489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005303490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005303491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005315827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005315828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005315829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005346578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005346579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005346580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005380355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005380356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005380357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005414099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005414100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005414101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00845036276   ⟹   ENSCAFP00845028387
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl281,108,160 - 1,283,203 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845036353   ⟹   ENSCAFP00845028453
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl281,118,561 - 1,283,203 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845036425   ⟹   ENSCAFP00845028510
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl281,127,804 - 1,208,155 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845036516   ⟹   ENSCAFP00845028577
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl281,246,242 - 1,283,079 (-)Ensembl
RefSeq Acc Id: XM_038439763   ⟹   XP_038295691
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0281,130,805 - 1,208,164 (-)NCBI
RefSeq Acc Id: XM_038439764   ⟹   XP_038295692
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0281,130,805 - 1,208,164 (-)NCBI
RefSeq Acc Id: XM_038439765   ⟹   XP_038295693
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0281,108,160 - 1,208,164 (-)NCBI
RefSeq Acc Id: XM_038439766   ⟹   XP_038295694
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0281,108,160 - 1,208,164 (-)NCBI
RefSeq Acc Id: XM_038439767   ⟹   XP_038295695
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0281,109,587 - 1,208,164 (-)NCBI
RefSeq Acc Id: XM_038439768   ⟹   XP_038295696
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0281,109,592 - 1,208,164 (-)NCBI
RefSeq Acc Id: XM_038439769   ⟹   XP_038295697
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0281,107,069 - 1,208,164 (-)NCBI
RefSeq Acc Id: XM_038460586   ⟹   XP_038316514
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha281,183,695 - 1,260,990 (-)NCBI
RefSeq Acc Id: XM_038460587   ⟹   XP_038316515
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha281,183,695 - 1,260,990 (-)NCBI
RefSeq Acc Id: XM_038460588   ⟹   XP_038316516
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha281,161,048 - 1,260,990 (-)NCBI
RefSeq Acc Id: XM_038460589   ⟹   XP_038316517
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha281,161,048 - 1,260,990 (-)NCBI
RefSeq Acc Id: XM_038460590   ⟹   XP_038316518
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha281,162,475 - 1,260,990 (-)NCBI
RefSeq Acc Id: XM_038460591   ⟹   XP_038316519
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha281,162,480 - 1,260,990 (-)NCBI
RefSeq Acc Id: XM_038460592   ⟹   XP_038316520
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha281,159,957 - 1,260,990 (-)NCBI
RefSeq Acc Id: XM_038514384   ⟹   XP_038370312
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.128929,153 - 1,006,508 (-)NCBI
RefSeq Acc Id: XM_038514385   ⟹   XP_038370313
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.128929,153 - 1,006,508 (-)NCBI
RefSeq Acc Id: XM_038514386   ⟹   XP_038370314
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.128906,419 - 1,006,508 (-)NCBI
RefSeq Acc Id: XM_038514387   ⟹   XP_038370315
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.128906,419 - 1,006,508 (-)NCBI
RefSeq Acc Id: XM_038514388   ⟹   XP_038370316
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.128907,846 - 1,006,508 (-)NCBI
RefSeq Acc Id: XM_038514389   ⟹   XP_038370317
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.128907,851 - 1,006,508 (-)NCBI
RefSeq Acc Id: XM_038514390   ⟹   XP_038370318
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.128905,327 - 1,006,508 (-)NCBI
RefSeq Acc Id: XM_038578037   ⟹   XP_038433965
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0281,096,114 - 1,173,413 (-)NCBI
RefSeq Acc Id: XM_038578038   ⟹   XP_038433966
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0281,096,114 - 1,173,413 (-)NCBI
RefSeq Acc Id: XM_038578039   ⟹   XP_038433967
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0281,073,469 - 1,173,413 (-)NCBI
RefSeq Acc Id: XM_038578040   ⟹   XP_038433968
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0281,073,469 - 1,173,413 (-)NCBI
RefSeq Acc Id: XM_038578041   ⟹   XP_038433969
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0281,074,896 - 1,173,413 (-)NCBI
RefSeq Acc Id: XM_038578042   ⟹   XP_038433970
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0281,074,901 - 1,173,413 (-)NCBI
RefSeq Acc Id: XM_038578043   ⟹   XP_038433971
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0281,072,378 - 1,173,413 (-)NCBI
RefSeq Acc Id: XM_038642196   ⟹   XP_038498124
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.028973,203 - 1,050,338 (-)NCBI
RefSeq Acc Id: XM_038642197   ⟹   XP_038498125
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.028973,203 - 1,050,338 (-)NCBI
RefSeq Acc Id: XM_038642198   ⟹   XP_038498126
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.028950,521 - 1,050,338 (-)NCBI
RefSeq Acc Id: XM_038642199   ⟹   XP_038498127
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.028950,521 - 1,050,338 (-)NCBI
RefSeq Acc Id: XM_038642200   ⟹   XP_038498128
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.028951,948 - 1,050,338 (-)NCBI
RefSeq Acc Id: XM_038642201   ⟹   XP_038498129
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.028951,953 - 1,050,338 (-)NCBI
RefSeq Acc Id: XM_038642202   ⟹   XP_038498130
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.028949,430 - 1,050,338 (-)NCBI
RefSeq Acc Id: XR_005303489
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0281,109,648 - 1,208,164 (-)NCBI
RefSeq Acc Id: XR_005303490
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0281,121,247 - 1,208,164 (-)NCBI
RefSeq Acc Id: XR_005303491
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0281,107,069 - 1,208,164 (-)NCBI
RefSeq Acc Id: XR_005315827
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha281,162,536 - 1,260,990 (-)NCBI
RefSeq Acc Id: XR_005315828
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha281,174,134 - 1,260,990 (-)NCBI
RefSeq Acc Id: XR_005315829
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha281,159,957 - 1,260,990 (-)NCBI
RefSeq Acc Id: XR_005346578
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.128907,907 - 1,006,508 (-)NCBI
RefSeq Acc Id: XR_005346579
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.128919,504 - 1,006,508 (-)NCBI
RefSeq Acc Id: XR_005346580
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.128905,327 - 1,006,508 (-)NCBI
RefSeq Acc Id: XR_005380355
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0281,074,957 - 1,173,413 (-)NCBI
RefSeq Acc Id: XR_005380356
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0281,086,556 - 1,173,413 (-)NCBI
RefSeq Acc Id: XR_005380357
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0281,072,378 - 1,173,413 (-)NCBI
RefSeq Acc Id: XR_005414099
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.028952,009 - 1,050,338 (-)NCBI
RefSeq Acc Id: XR_005414100
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.028963,640 - 1,050,338 (-)NCBI
RefSeq Acc Id: XR_005414101
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.028949,430 - 1,050,338 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038295691 (Get FASTA)   NCBI Sequence Viewer  
  XP_038295692 (Get FASTA)   NCBI Sequence Viewer  
  XP_038295693 (Get FASTA)   NCBI Sequence Viewer  
  XP_038295694 (Get FASTA)   NCBI Sequence Viewer  
  XP_038295695 (Get FASTA)   NCBI Sequence Viewer  
  XP_038295696 (Get FASTA)   NCBI Sequence Viewer  
  XP_038295697 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316514 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316515 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316516 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316517 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316518 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316519 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316520 (Get FASTA)   NCBI Sequence Viewer  
  XP_038370312 (Get FASTA)   NCBI Sequence Viewer  
  XP_038370313 (Get FASTA)   NCBI Sequence Viewer  
  XP_038370314 (Get FASTA)   NCBI Sequence Viewer  
  XP_038370315 (Get FASTA)   NCBI Sequence Viewer  
  XP_038370316 (Get FASTA)   NCBI Sequence Viewer  
  XP_038370317 (Get FASTA)   NCBI Sequence Viewer  
  XP_038370318 (Get FASTA)   NCBI Sequence Viewer  
  XP_038433965 (Get FASTA)   NCBI Sequence Viewer  
  XP_038433966 (Get FASTA)   NCBI Sequence Viewer  
  XP_038433967 (Get FASTA)   NCBI Sequence Viewer  
  XP_038433968 (Get FASTA)   NCBI Sequence Viewer  
  XP_038433969 (Get FASTA)   NCBI Sequence Viewer  
  XP_038433970 (Get FASTA)   NCBI Sequence Viewer  
  XP_038433971 (Get FASTA)   NCBI Sequence Viewer  
  XP_038498124 (Get FASTA)   NCBI Sequence Viewer  
  XP_038498125 (Get FASTA)   NCBI Sequence Viewer  
  XP_038498126 (Get FASTA)   NCBI Sequence Viewer  
  XP_038498127 (Get FASTA)   NCBI Sequence Viewer  
  XP_038498128 (Get FASTA)   NCBI Sequence Viewer  
  XP_038498129 (Get FASTA)   NCBI Sequence Viewer  
  XP_038498130 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000035918.3
  ENSCAFP00000037172.2
  ENSCAFP00000060257.1
  ENSCAFP00000062517.1
  ENSCAFP00030028977.1
  ENSCAFP00030029096.1
  ENSCAFP00030029146.1
  ENSCAFP00040036204.1
  ENSCAFP00040036219.1
  ENSCAFP00040036251.1
  ENSCAFP00845028387
  ENSCAFP00845028387.1
  ENSCAFP00845028453
  ENSCAFP00845028453.1
  ENSCAFP00845028510
  ENSCAFP00845028510.1
Reference Protein Sequences
RefSeq Acc Id: XP_038370318   ⟸   XM_038514390
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038370315   ⟸   XM_038514387
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038370314   ⟸   XM_038514386
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038370316   ⟸   XM_038514388
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038370317   ⟸   XM_038514389
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038370313   ⟸   XM_038514385
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038370312   ⟸   XM_038514384
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038498130   ⟸   XM_038642202
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038498127   ⟸   XM_038642199
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038498126   ⟸   XM_038642198
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038498128   ⟸   XM_038642200
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038498129   ⟸   XM_038642201
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038498125   ⟸   XM_038642197
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038498124   ⟸   XM_038642196
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038295697   ⟸   XM_038439769
- Peptide Label: isoform X6
- UniProtKB: A0A8I3P9E2 (UniProtKB/TrEMBL),   A0A8P0PBC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038295694   ⟸   XM_038439766
- Peptide Label: isoform X4
- UniProtKB: A0A8C0THM1 (UniProtKB/TrEMBL),   A0A8I3S4H4 (UniProtKB/TrEMBL),   A0A8P0SS45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038295693   ⟸   XM_038439765
- Peptide Label: isoform X3
- UniProtKB: A0A8I3S4H4 (UniProtKB/TrEMBL),   A0A8P0SS45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038295695   ⟸   XM_038439767
- Peptide Label: isoform X5
- UniProtKB: A0A8I3P9E2 (UniProtKB/TrEMBL),   A0A8P0PBC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038295696   ⟸   XM_038439768
- Peptide Label: isoform X5
- UniProtKB: A0A8I3P9E2 (UniProtKB/TrEMBL),   A0A8P0PBC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038295692   ⟸   XM_038439764
- Peptide Label: isoform X2
- UniProtKB: A0A8I3S1V4 (UniProtKB/TrEMBL),   A0A8P0NNA7 (UniProtKB/TrEMBL),   A0A8C0Z4G5 (UniProtKB/TrEMBL),   A0A8P0P9B0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038295691   ⟸   XM_038439763
- Peptide Label: isoform X1
- UniProtKB: A0A8C0Z4G5 (UniProtKB/TrEMBL),   A0A8P0P9B0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316520   ⟸   XM_038460592
- Peptide Label: isoform X6
- UniProtKB: A0A8I3P9E2 (UniProtKB/TrEMBL),   A0A8P0PBC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316517   ⟸   XM_038460589
- Peptide Label: isoform X4
- UniProtKB: A0A8C0THM1 (UniProtKB/TrEMBL),   A0A8I3S4H4 (UniProtKB/TrEMBL),   A0A8P0SS45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316516   ⟸   XM_038460588
- Peptide Label: isoform X3
- UniProtKB: A0A8I3S4H4 (UniProtKB/TrEMBL),   A0A8P0SS45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316518   ⟸   XM_038460590
- Peptide Label: isoform X5
- UniProtKB: A0A8I3P9E2 (UniProtKB/TrEMBL),   A0A8P0PBC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316519   ⟸   XM_038460591
- Peptide Label: isoform X5
- UniProtKB: A0A8I3P9E2 (UniProtKB/TrEMBL),   A0A8P0PBC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316515   ⟸   XM_038460587
- Peptide Label: isoform X2
- UniProtKB: A0A8I3S1V4 (UniProtKB/TrEMBL),   A0A8P0NNA7 (UniProtKB/TrEMBL),   A0A8C0Z4G5 (UniProtKB/TrEMBL),   A0A8P0P9B0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316514   ⟸   XM_038460586
- Peptide Label: isoform X1
- UniProtKB: A0A8C0Z4G5 (UniProtKB/TrEMBL),   A0A8P0P9B0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433971   ⟸   XM_038578043
- Peptide Label: isoform X6
- UniProtKB: A0A8I3P9E2 (UniProtKB/TrEMBL),   A0A8P0PBC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433968   ⟸   XM_038578040
- Peptide Label: isoform X4
- UniProtKB: A0A8C0THM1 (UniProtKB/TrEMBL),   A0A8I3S4H4 (UniProtKB/TrEMBL),   A0A8P0SS45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433967   ⟸   XM_038578039
- Peptide Label: isoform X3
- UniProtKB: A0A8I3S4H4 (UniProtKB/TrEMBL),   A0A8P0SS45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433969   ⟸   XM_038578041
- Peptide Label: isoform X5
- UniProtKB: A0A8I3P9E2 (UniProtKB/TrEMBL),   A0A8P0PBC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433970   ⟸   XM_038578042
- Peptide Label: isoform X5
- UniProtKB: A0A8I3P9E2 (UniProtKB/TrEMBL),   A0A8P0PBC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433966   ⟸   XM_038578038
- Peptide Label: isoform X2
- UniProtKB: A0A8C0Z4G5 (UniProtKB/TrEMBL),   A0A8I3S1V4 (UniProtKB/TrEMBL),   A0A8P0NNA7 (UniProtKB/TrEMBL),   A0A8P0P9B0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433965   ⟸   XM_038578037
- Peptide Label: isoform X1
- UniProtKB: A0A8C0Z4G5 (UniProtKB/TrEMBL),   A0A8P0P9B0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845028453   ⟸   ENSCAFT00845036353
RefSeq Acc Id: ENSCAFP00845028577   ⟸   ENSCAFT00845036516
RefSeq Acc Id: ENSCAFP00845028387   ⟸   ENSCAFT00845036276
RefSeq Acc Id: ENSCAFP00845028510   ⟸   ENSCAFT00845036425
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006604 UniProtKB/TrEMBL
  ENSCAFG00030017957 UniProtKB/TrEMBL
  ENSCAFG00040022320 UniProtKB/TrEMBL
  ENSCAFG00845020585 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000043225.3 UniProtKB/TrEMBL
  ENSCAFT00000047033.3 UniProtKB/TrEMBL
  ENSCAFT00000067357.2 UniProtKB/TrEMBL
  ENSCAFT00000068549.2 UniProtKB/TrEMBL
  ENSCAFT00030033212.1 UniProtKB/TrEMBL
  ENSCAFT00030033345.1 UniProtKB/TrEMBL
  ENSCAFT00030033405.1 UniProtKB/TrEMBL
  ENSCAFT00040041502.1 UniProtKB/TrEMBL
  ENSCAFT00040041520.1 UniProtKB/TrEMBL
  ENSCAFT00040041558.1 UniProtKB/TrEMBL
  ENSCAFT00845036276 ENTREZGENE
  ENSCAFT00845036276.1 UniProtKB/TrEMBL
  ENSCAFT00845036353 ENTREZGENE
  ENSCAFT00845036353.1 UniProtKB/TrEMBL
  ENSCAFT00845036425 ENTREZGENE
  ENSCAFT00845036425.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
NCBI Gene VSTM4 ENTREZGENE
PANTHER V-SET AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  V-SET AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN 4 UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A8C0NMR0_CANLF UniProtKB/TrEMBL
  A0A8C0TF03_CANLF UniProtKB/TrEMBL
  A0A8C0THM1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Z4G5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P9E2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S1V4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S4H4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NNA7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0P9B0 ENTREZGENE
  A0A8P0PBC4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SS45 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8P0P9B0 UniProtKB/TrEMBL
VGNC ID VGNC:53017 ENTREZGENE