UQCR11 (ubiquinol-cytochrome c reductase, complex III subunit XI) - Rat Genome Database

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Gene: UQCR11 (ubiquinol-cytochrome c reductase, complex III subunit XI) Canis lupus familiaris
Analyze
Symbol: UQCR11
Name: ubiquinol-cytochrome c reductase, complex III subunit XI
RGD ID: 12363085
Description: INVOLVED IN mitochondrial electron transport, ubiquinol to cytochrome c (inferred); ASSOCIATED WITH cerebral creatine deficiency syndrome (ortholog); cyclic hematopoiesis (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN mitochondrial respiratory chain complex III (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytochrome b-c1 complex subunit 10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,289,122 - 57,291,334 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,080,994 - 57,083,188 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02058,019,542 - 58,021,737 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2058,019,584 - 58,024,025 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12057,076,522 - 57,078,716 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02057,555,854 - 57,558,049 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02057,757,694 - 57,759,888 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
UQCR11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,289,122 - 57,291,334 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,080,994 - 57,083,188 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02058,019,542 - 58,021,737 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2058,019,584 - 58,024,025 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12057,076,522 - 57,078,716 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02057,555,854 - 57,558,049 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02057,757,694 - 57,759,888 (+)NCBIUU_Cfam_GSD_1.0
UQCR11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38191,597,169 - 1,605,462 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl191,597,169 - 1,605,473 (-)EnsemblGRCh38hg38GRCh38
GRCh37191,597,168 - 1,605,461 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36191,548,171 - 1,556,431 (-)NCBINCBI36Build 36hg18NCBI36
Build 34191,548,171 - 1,556,431NCBI
Celera191,532,010 - 1,540,339 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef191,371,097 - 1,379,426 (-)NCBIHuRef
CHM1_1191,596,987 - 1,605,316 (-)NCBICHM1_1
T2T-CHM13v2.0191,567,992 - 1,576,285 (-)NCBIT2T-CHM13v2.0
Uqcr11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391080,238,831 - 80,242,655 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1080,238,831 - 80,242,664 (-)EnsemblGRCm39 Ensembl
GRCm381080,402,997 - 80,406,821 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1080,402,997 - 80,406,830 (-)EnsemblGRCm38mm10GRCm38
MGSCv371079,865,742 - 79,869,566 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361079,806,128 - 79,809,959 (-)NCBIMGSCv36mm8
Celera1081,420,365 - 81,424,189 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Uqcr11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr879,955,717 - 9,960,432 (+)NCBIGRCr8
mRatBN7.279,305,042 - 9,309,753 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,305,058 - 9,309,750 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx712,181,591 - 12,186,232 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,056,931 - 14,061,572 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0711,924,623 - 11,929,269 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,171,146 - 12,175,838 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,171,185 - 12,175,835 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0712,341,209 - 12,345,893 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4710,816,422 - 10,821,051 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera77,483,813 - 7,488,445 (+)NCBICelera
Cytogenetic Map7q11NCBI
LOC102028311
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,368,827 - 6,372,938 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554956,368,827 - 6,372,938 (+)NCBIChiLan1.0ChiLan1.0
LOC100970584
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2205,963,133 - 5,970,602 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,194,024 - 5,201,502 (-)NCBINHGRI_mPanPan1
PanPan1.1191,571,793 - 1,578,962 (-)NCBIpanpan1.1PanPan1.1panPan2
LOC101955110
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118216,954,077 - 216,958,028 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936588876,755 - 880,685 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936588876,750 - 880,677 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UQCR11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl276,903,281 - 76,909,544 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1276,903,219 - 76,906,276 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2278,173,437 - 78,176,555 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103233614
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.161,378,019 - 1,388,975 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660817,462,044 - 7,469,355 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101726493
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248287,123,392 - 7,127,337 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248287,123,371 - 7,127,341 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in UQCR11
43 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 10 6
Low 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00845025340   ⟹   ENSCAFP00845019942
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2058,019,584 - 58,024,025 (+)Ensembl
RefSeq Acc Id: XM_038429284   ⟹   XP_038285212
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02058,019,542 - 58,021,737 (+)NCBI
RefSeq Acc Id: XM_038504816   ⟹   XP_038360744
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12057,076,522 - 57,078,716 (+)NCBI
RefSeq Acc Id: XM_038567961   ⟹   XP_038423889
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02057,757,694 - 57,759,888 (+)NCBI
RefSeq Acc Id: XM_038632079   ⟹   XP_038488007
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02057,555,854 - 57,558,049 (+)NCBI
RefSeq Acc Id: XM_849498   ⟹   XP_854591
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12057,289,122 - 57,291,334 (+)NCBI
Dog10K_Boxer_Tasha2057,080,994 - 57,083,188 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_854591   ⟸   XM_849498
- UniProtKB: A0A8C0KYQ1 (UniProtKB/TrEMBL),   A0A8C0RYT1 (UniProtKB/TrEMBL),   A0A8I3NH06 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038360744   ⟸   XM_038504816
RefSeq Acc Id: XP_038488007   ⟸   XM_038632079
RefSeq Acc Id: XP_038285212   ⟸   XM_038429284
- UniProtKB: A0A8C0KYQ1 (UniProtKB/TrEMBL),   A0A8C0RYT1 (UniProtKB/TrEMBL),   A0A8I3NH06 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423889   ⟸   XM_038567961
- UniProtKB: A0A8C0KYQ1 (UniProtKB/TrEMBL),   A0A8C0RYT1 (UniProtKB/TrEMBL),   A0A8I3NH06 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845019942   ⟸   ENSCAFT00845025340


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000051792 UniProtKB/TrEMBL
  ENSCAFG00030012990 UniProtKB/TrEMBL
  ENSCAFG00040005634 UniProtKB/TrEMBL
  ENSCAFG00845014167 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000103766.1 UniProtKB/TrEMBL
  ENSCAFT00030024005.1 UniProtKB/TrEMBL
  ENSCAFT00040010577.1 UniProtKB/TrEMBL
  ENSCAFT00845025340 ENTREZGENE
  ENSCAFT00845025340.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.220 UniProtKB/TrEMBL
InterPro Single_a-helix_sf UniProtKB/TrEMBL
  UQCR UniProtKB/TrEMBL
KEGG Report cfa:611791 UniProtKB/TrEMBL
NCBI Gene UQCR11 ENTREZGENE
PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT 10 UniProtKB/TrEMBL
  PTHR15420 UniProtKB/TrEMBL
Pfam UCR_6-4kD UniProtKB/TrEMBL
Superfamily-SCOP SSF81518 UniProtKB/TrEMBL
UniProt A0A8C0KYQ1 ENTREZGENE
  A0A8C0RYT1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NH06 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:110104 ENTREZGENE