LOC102156298 (CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2-like) - Rat Genome Database

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Gene: LOC102156298 (CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2-like) Canis lupus familiaris
Analyze
No known orthologs.
Symbol: LOC102156298
Name: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2-like
RGD ID: 12347841
Description: ENCODES a protein that exhibits beta-galactoside (CMP) alpha-2,3-sialyltransferase activity (inferred); catalytic activity (inferred); sialyltransferase activity (inferred); INVOLVED IN ganglioside biosynthetic process via lactosylceramide (inferred); protein glycosylation (inferred); sialylation (inferred); FOUND IN Golgi apparatus (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12424,468,573 - 24,471,837 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2424,113,801 - 24,117,064 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02425,161,094 - 25,164,363 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12424,447,536 - 24,450,799 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02424,542,458 - 24,545,726 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02424,982,071 - 24,985,345 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC102156298
34 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 8
Low 4 6 1 6 2 1
Below cutoff 5 5 18 6 6 5 10 10 5

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005634978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014106898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014106899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038432865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038432866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038432867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038571371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038571372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038571373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038635568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038635569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038635570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005634978   ⟹   XP_005635035
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12424,468,573 - 24,471,837 (-)NCBI
Dog10K_Boxer_Tasha2424,113,801 - 24,117,064 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014106898   ⟹   XP_013962373
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12424,468,573 - 24,471,815 (-)NCBI
Dog10K_Boxer_Tasha2424,113,801 - 24,117,041 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014106899   ⟹   XP_013962374
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12424,468,573 - 24,471,828 (-)NCBI
Dog10K_Boxer_Tasha2424,113,801 - 24,117,055 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038432865   ⟹   XP_038288793
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02425,161,094 - 25,164,340 (-)NCBI
RefSeq Acc Id: XM_038432866   ⟹   XP_038288794
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02425,161,094 - 25,164,363 (-)NCBI
RefSeq Acc Id: XM_038432867   ⟹   XP_038288795
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02425,161,094 - 25,164,354 (-)NCBI
RefSeq Acc Id: XM_038509631   ⟹   XP_038365559
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12424,447,536 - 24,450,776 (-)NCBI
RefSeq Acc Id: XM_038509632   ⟹   XP_038365560
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12424,447,536 - 24,450,799 (-)NCBI
RefSeq Acc Id: XM_038509633   ⟹   XP_038365561
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12424,447,536 - 24,450,790 (-)NCBI
RefSeq Acc Id: XM_038571371   ⟹   XP_038427299
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02424,982,071 - 24,985,322 (-)NCBI
RefSeq Acc Id: XM_038571372   ⟹   XP_038427300
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02424,982,071 - 24,985,345 (-)NCBI
RefSeq Acc Id: XM_038571373   ⟹   XP_038427301
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02424,982,071 - 24,985,336 (-)NCBI
RefSeq Acc Id: XM_038635568   ⟹   XP_038491496
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02424,542,458 - 24,545,703 (-)NCBI
RefSeq Acc Id: XM_038635569   ⟹   XP_038491497
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02424,542,458 - 24,545,726 (-)NCBI
RefSeq Acc Id: XM_038635570   ⟹   XP_038491498
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02424,542,458 - 24,545,717 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_013962373   ⟸   XM_014106898
- Peptide Label: isoform X2
- UniProtKB: A0A8P0TDR0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013962374   ⟸   XM_014106899
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005635035   ⟸   XM_005634978
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_038365560   ⟸   XM_038509632
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038365561   ⟸   XM_038509633
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038365559   ⟸   XM_038509631
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038491497   ⟸   XM_038635569
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038491498   ⟸   XM_038635570
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038491496   ⟸   XM_038635568
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038288794   ⟸   XM_038432866
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038288795   ⟸   XM_038432867
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038288793   ⟸   XM_038432865
- Peptide Label: isoform X2
- UniProtKB: A0A8I3S4L2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038427300   ⟸   XM_038571372
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038427301   ⟸   XM_038571373
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038427299   ⟸   XM_038571371
- Peptide Label: isoform X2
- UniProtKB: A0A8I3S4L2 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000025539 UniProtKB/TrEMBL
  ENSCAFG00845020778 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000074194.2 UniProtKB/TrEMBL
  ENSCAFT00845036673.1 UniProtKB/TrEMBL
  ENSCAFT00845036726 ENTREZGENE
  ENSCAFT00845036726.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1480.20 UniProtKB/TrEMBL
InterPro Glyco_trans_29 UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/TrEMBL
NCBI Gene LOC102156298 ENTREZGENE
PANTHER ALPHA-2,3-SIALYLTRANSFERASE ST3GAL I ISOFORM X1 UniProtKB/TrEMBL
  ST3 BETA-GALACTOSIDE ALPHA-2,3-SIALYLTRANSFERASE 8 UniProtKB/TrEMBL
Pfam Glyco_transf_29 UniProtKB/TrEMBL
UniProt A0A8I3PIX3_CANLF UniProtKB/TrEMBL
  A0A8I3S4L2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TDR0 ENTREZGENE, UniProtKB/TrEMBL