LOC106559796 (uncharacterized LOC106559796)

Gene: LOC106559796 (uncharacterized LOC106559796) Canis lupus familiaris

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Symbol:

LOC106559796

Name:

uncharacterized LOC106559796

RGD ID:

12336361

Description:

ENCODES a protein that exhibits RNA nuclease activity (ortholog); INVOLVED IN antibacterial humoral response (ortholog); antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); defense response to Gram-negative bacterium (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); liver disease (ortholog); FOUND IN cytoplasmic vesicle (ortholog); extracellular space (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ribonuclease A family member k6; ribonuclease K6; RNASE6

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	18,024,375 - 18,025,871 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	18,509,979 - 18,511,491 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	18,285,311 - 18,286,754 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	15	17,966,610 - 17,968,121 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	18,022,678 - 18,024,183 (+)	NCBI		UNSW_CanFamBas_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Brain-Lung-Thyroid Syndrome (ISO)

genetic disease (ISO)

liver disease (ISO)

purine nucleoside phosphorylase deficiency (ISO)

toxic encephalopathy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

antibacterial humoral response (ISO)

antimicrobial humoral immune response mediated by antimicrobial peptide (ISO)

defense response to Gram-negative bacterium (ISO)

defense response to Gram-positive bacterium (ISO)

defense response to virus (ISO)

innate immune response (ISO)

Cellular Component

cytoplasmic vesicle (ISO)

extracellular space (ISO)

Molecular Function

RNA nuclease activity (ISO)

References

Genomics

Comparative Map Data

LOC106559796
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	18,024,375 - 18,025,871 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	18,509,979 - 18,511,491 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	18,285,311 - 18,286,754 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	15	17,966,610 - 17,968,121 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	18,022,678 - 18,024,183 (+)	NCBI		UNSW_CanFamBas_1.0

RNASE6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	20,781,070 - 20,782,467 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	20,781,268 - 20,782,467 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	21,249,427 - 21,250,626 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	20,319,050 - 20,320,466 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	20,319,049 - 20,320,464	NCBI
Celera	14	1,110,074 - 1,111,490 (+)	NCBI		Celera
Cytogenetic Map	14	q11.2	NCBI
HuRef	14	1,370,222 - 1,371,638 (+)	NCBI		HuRef
CHM1_1	14	21,251,198 - 21,252,614 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	14,978,092 - 14,979,588 (+)	NCBI		T2T-CHM13v2.0

Rnase6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	51,361,365 - 51,369,644 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	51,361,365 - 51,369,644 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	51,123,908 - 51,132,187 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	51,123,908 - 51,132,187 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	51,748,743 - 51,750,797 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	50,051,041 - 50,052,975 (+)	NCBI		MGSCv36	mm8
Celera	14	47,424,272 - 47,426,326 (+)	NCBI		Celera
Cytogenetic Map	14	C1	NCBI
cM Map	14	26.39	NCBI

Rnase6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	26,827,896 - 26,830,807 (+)	NCBI		GRCr8
mRatBN7.2	15	24,354,305 - 24,357,289 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	24,354,303 - 24,357,328 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	27,127,289 - 27,127,750 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	28,086,431 - 28,086,892 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	26,335,850 - 26,336,311 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	28,080,307 - 28,084,269 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	28,081,004 - 28,081,465 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	31,888,498 - 31,906,605 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	27,117,646 - 27,118,107 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	27,133,345 - 27,133,807 (+)	NCBI
Celera	15	24,673,730 - 24,674,191 (+)	NCBI		Celera
Cytogenetic Map	15	p14	NCBI

Rnase6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955550	1,687,068 - 1,688,160 (-)	NCBI	ChiLan1.0	ChiLan1.0

RNASE6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	22,278,035 - 22,279,920 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	21,494,353 - 21,496,407 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	1,642,819 - 1,644,582 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	19,699,881 - 19,701,303 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	19,700,536 - 19,700,988 (+)	Ensembl	panpan1.1		panPan2

Rnase6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	32,168,616 - 32,169,962 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936880	78,081 - 79,021 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936880	78,532 - 79,342 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RNASE6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	78,220,131 - 78,221,665 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	78,220,131 - 78,221,665 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

RNASE6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	29	21,285,708 - 21,287,452 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	29	21,286,685 - 21,287,134 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	25,143,712 - 25,145,458 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rnase6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624825	4,468,213 - 4,469,566 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624825	4,468,213 - 4,469,557 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in LOC106559796
48 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_002633477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005336568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005404572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005438114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_002633477

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	15	18,024,375 - 18,025,871 (+)	NCBI
Dog10K_Boxer_Tasha	15	18,509,979 - 18,511,491 (+)	NCBI

Sequence:

show sequence

TACGCAGGTCCCCGGGGTACTTAGGCCGCCCCAGGGTGGGGAGCAGGCTCGACCTCAGAGTCGG
GCTGCGCGTGGCCTGGGTGACATCCGGAGCCTCGCAGGACACCTGAGGGATGATGCTGCATCTC
CCAGGGCCGTGGCCGCTGCTGCTGCTGCTGCTGCTGGGATCATGGGGACCAGTGCCTCCAGCTG
CTGCTCCGCCTCCAGGCGTCACTGCCGTTCGGTGGTTTATCACCGAGCACGTCAGAGCGGGTCC
GGTGAGATGCAGCACTGAAATGCCTCAGATCAATTATCGCCCTAACATATGTAAGGGGCAAAAC
ACCTTTCTGCAAGAGTCCTTCCAAAACGTGGTTGCTACCTGTCAACAGCCCAACAGGACCTGTA
AGAATGGCCTGGGAAACTGCCACAAGAGCGCAGGGAGGGTGAACATGACCTACTGCCTTCTCAC
TGGGCGCCGGCCCCAGTGCACCTACCGTACTACGTACCAGAACCAGTTCTACATTGTTGCCTGT
AACAACTCGCAGCCAGGCTACCCTCCCAATCTTCTGCTTCCCGTCCACTTAGACGACACCGTCC
CGCTGGGTCCTACACACTTCGGTTAAGACCAAGGTGGCCATTGCGGTCCCTCCCCCTGGGCCAG
GCTCTCTCATGATGTCTCTGCTTTCTCTTTCCTTTGTTGATTCCCATGGTTCCCATAGAAGAAA
TAAGTAAAGGGCCAAGATGTGAGACGAGAGTAAGGGACAGCAGACTTTGGATGCTTTTCAGATT
GGGAGCTCTGTGTGATTGGAAGGAAGGCAATAGGGCAGAGGGCCAAGAACGGCCCAGGCCCCAT
GGTTTTCCTCTTGCACCTTCGGCCAAGCTTCCTTGCACCTGTTCACAGCAATAAAATCATTTTC
TCCTGCA

hide sequence

RefSeq Acc Id:

XR_005336568

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	15	17,966,610 - 17,968,121 (+)	NCBI

RefSeq Acc Id:

XR_005404572

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	15	18,022,678 - 18,024,183 (+)	NCBI

RefSeq Acc Id:

XR_005438114

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	15	18,285,311 - 18,286,754 (+)	NCBI

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	RNASE6	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-09-12	LOC106559796	uncharacterized LOC106559796	RNASE6	ribonuclease A family member k6	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD