NPY2R (neuropeptide Y receptor Y2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: NPY2R (neuropeptide Y receptor Y2) Canis lupus familiaris
Analyze
Symbol: NPY2R
Name: neuropeptide Y receptor Y2
RGD ID: 12330671
Description: ENCODES a protein that exhibits neuropeptide Y receptor activity (ortholog); peptide YY receptor activity (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); behavioral fear response (ortholog); G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); atherosclerosis (ortholog); childhood absence epilepsy (ortholog); FOUND IN cilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neuropeptide Y receptor type 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11552,790,136 - 52,797,785 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1552,794,671 - 52,795,818 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1553,131,265 - 53,141,184 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01553,475,002 - 53,484,515 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1553,481,383 - 53,484,128 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11552,727,621 - 52,737,421 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01552,836,294 - 52,846,610 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01553,149,800 - 53,159,345 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:15670655   PMID:22301074  


Genomics

Comparative Map Data
NPY2R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11552,790,136 - 52,797,785 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1552,794,671 - 52,795,818 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1553,131,265 - 53,141,184 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01553,475,002 - 53,484,515 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1553,481,383 - 53,484,128 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11552,727,621 - 52,737,421 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01552,836,294 - 52,846,610 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01553,149,800 - 53,159,345 (+)NCBIUU_Cfam_GSD_1.0
NPY2R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384155,173,723 - 155,217,076 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4155,208,636 - 155,217,078 (+)EnsemblGRCh38hg38GRCh38
GRCh374156,094,875 - 156,138,228 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364156,349,232 - 156,357,678 (+)NCBINCBI36Build 36hg18NCBI36
Build 344156,487,385 - 156,495,832NCBI
Celera4153,460,186 - 153,468,632 (+)NCBICelera
Cytogenetic Map4q32.1NCBI
HuRef4151,868,438 - 151,876,885 (+)NCBIHuRef
CHM1_14156,107,896 - 156,116,343 (+)NCBICHM1_1
T2T-CHM13v2.04158,505,608 - 158,548,978 (+)NCBIT2T-CHM13v2.0
Npy2r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39382,445,688 - 82,455,404 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl382,445,690 - 82,455,391 (-)EnsemblGRCm39 Ensembl
GRCm38382,538,383 - 82,548,989 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl382,538,383 - 82,548,084 (-)EnsemblGRCm38mm10GRCm38
MGSCv37382,342,305 - 82,352,007 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36382,624,310 - 82,634,013 (-)NCBIMGSCv36mm8
Celera382,557,426 - 82,567,083 (-)NCBICelera
Cytogenetic Map3E3NCBI
cM Map336.49NCBI
Npy2r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82170,200,027 - 170,210,286 (-)NCBIGRCr8
mRatBN7.22167,901,999 - 167,912,165 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2167,903,879 - 167,905,024 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2175,099,298 - 175,100,444 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02173,120,230 - 173,121,376 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02167,713,107 - 167,714,253 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02181,528,949 - 181,538,145 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2181,530,832 - 181,531,978 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02200,942,882 - 200,952,072 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42150,554,962 - 150,556,108 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12174,209,622 - 174,210,769 (-)NCBI
Celera2161,929,373 - 161,930,519 (-)NCBICelera
Cytogenetic Map2q34NCBI
Npy2r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547111,796,278 - 11,804,114 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547111,796,278 - 11,804,114 (-)NCBIChiLan1.0ChiLan1.0
NPY2R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23153,087,172 - 153,132,447 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14153,442,534 - 153,487,785 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04147,542,551 - 147,586,397 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14159,360,854 - 159,404,224 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4159,401,080 - 159,402,231 (+)Ensemblpanpan1.1panPan2
Npy2r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530137,606,621 - 37,615,131 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365761,932,870 - 1,938,703 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365761,932,526 - 1,939,560 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NPY2R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl874,039,616 - 74,047,817 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1874,039,959 - 74,048,398 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2878,331,707 - 78,340,148 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NPY2R
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17101,696,081 - 101,773,782 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7101,770,551 - 101,771,696 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603781,413,529 - 81,421,886 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Npy2r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248483,048,413 - 3,054,495 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248483,049,009 - 3,054,548 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NPY2R
112 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 6
Low 3 7 5 4 5 3 6 8 1
Below cutoff 2 5 15 1 2 1 3 6 5 9

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000013442   ⟹   ENSCAFP00000066087
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1552,794,671 - 52,795,818 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845017841   ⟹   ENSCAFP00845013896
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1553,481,383 - 53,484,128 (+)Ensembl
RefSeq Acc Id: XM_005629373   ⟹   XP_005629430
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11552,790,136 - 52,797,785 (+)NCBI
Dog10K_Boxer_Tasha1553,133,499 - 53,141,184 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038451982   ⟹   XP_038307910
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1553,131,265 - 53,141,184 (+)NCBI
RefSeq Acc Id: XM_038496692   ⟹   XP_038352620
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11552,729,742 - 52,737,421 (+)NCBI
RefSeq Acc Id: XM_038496693   ⟹   XP_038352621
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11552,727,621 - 52,737,421 (+)NCBI
RefSeq Acc Id: XM_038559085   ⟹   XP_038415013
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01553,151,652 - 53,159,345 (+)NCBI
RefSeq Acc Id: XM_038559086   ⟹   XP_038415014
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01553,149,800 - 53,159,345 (+)NCBI
RefSeq Acc Id: XM_038623022   ⟹   XP_038478950
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01552,838,909 - 52,846,610 (+)NCBI
RefSeq Acc Id: XM_038623023   ⟹   XP_038478951
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01552,836,294 - 52,846,610 (+)NCBI
RefSeq Acc Id: XM_038688695   ⟹   XP_038544623
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01553,476,814 - 53,484,515 (+)NCBI
RefSeq Acc Id: XM_038688696   ⟹   XP_038544624
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01553,475,002 - 53,484,515 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005629430   ⟸   XM_005629373
- Sequence:
RefSeq Acc Id: ENSCAFP00000066087   ⟸   ENSCAFT00000013442
RefSeq Acc Id: XP_038352621   ⟸   XM_038496693
RefSeq Acc Id: XP_038352620   ⟸   XM_038496692
RefSeq Acc Id: XP_038478951   ⟸   XM_038623023
RefSeq Acc Id: XP_038478950   ⟸   XM_038623022
RefSeq Acc Id: XP_038544624   ⟸   XM_038688696
RefSeq Acc Id: XP_038544623   ⟸   XM_038688695
RefSeq Acc Id: XP_038307910   ⟸   XM_038451982
RefSeq Acc Id: XP_038415014   ⟸   XM_038559086
RefSeq Acc Id: XP_038415013   ⟸   XM_038559085
RefSeq Acc Id: ENSCAFP00845013896   ⟸   ENSCAFT00845017841
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000008476 Ensembl
  ENSCAFG00000050243 UniProtKB/TrEMBL
  ENSCAFG00030008386 UniProtKB/TrEMBL
  ENSCAFG00040013095 UniProtKB/TrEMBL
  ENSCAFG00845010147 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000101430.1 UniProtKB/TrEMBL
  ENSCAFT00030015385.1 UniProtKB/TrEMBL
  ENSCAFT00040024187.1 UniProtKB/TrEMBL
  ENSCAFT00845017841.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  NPY2_rcpt UniProtKB/TrEMBL
NCBI Gene NPY2R ENTREZGENE
PANTHER NEUROPEPTIDE Y RECEPTOR UniProtKB/TrEMBL
  NEUROPEPTIDE Y RECEPTOR TYPE 2 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  NRPEPTIDEY2R UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C0SG18_CANLF UniProtKB/TrEMBL
  A0A8I3RVM8_CANLF UniProtKB/TrEMBL