LOC482706 (non-POU domain containing, octamer-binding pseudogene) - Rat Genome Database

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Gene: LOC482706 (non-POU domain containing, octamer-binding pseudogene) Canis lupus familiaris
Analyze
No known orthologs.
Symbol: LOC482706
Name: non-POU domain containing, octamer-binding pseudogene
RGD ID: 12328341
Description: ENCODES a pseudogene that exhibits RNA binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); FOUND IN nucleus (inferred)
Type: pseudo
RefSeq Status: MODEL
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11612,956,108 - 12,958,407 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1613,967,717 - 13,970,038 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01612,935,554 - 12,937,877 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11613,378,288 - 13,380,608 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01612,477,223 - 12,479,533 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01612,615,999 - 12,618,322 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function
RNA binding  (IEA)

References

Genomics

Variants

.
Variants in LOC482706
62 total Variants

Expression


Sequence


Protein Sequences
Ensembl Protein ENSCAFP00845013151.1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00845009593 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00845016897.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
  6.10.250.1170 UniProtKB/TrEMBL
InterPro NOPS UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  p54nrb_RRM1 UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene LOC482706 ENTREZGENE
PANTHER NON-POU DOMAIN-CONTAINING OCTAMER-BINDING PROTEIN UniProtKB/TrEMBL
  RNA RECOGNITION MOTIF-CONTAINING UniProtKB/TrEMBL
Pfam NOPS UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8I3NCQ9_CANLF UniProtKB/TrEMBL