LOC100685953 (chloride intracellular channel protein 1-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC100685953 (chloride intracellular channel protein 1-like) Canis lupus familiaris
Analyze
No known orthologs.
Symbol: LOC100685953
Name: chloride intracellular channel protein 1-like
RGD ID: 12326211
Description: ENCODES a protein that exhibits chloride channel activity (inferred); INVOLVED IN chloride transmembrane transport (inferred); chloride transport (inferred); monoatomic ion transmembrane transport (inferred); FOUND IN chloride channel complex (inferred); cytoplasm (inferred); endoplasmic reticulum (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chloride intracellular channel protein 1 pseudogene
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11631,230,263 - 31,231,112 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1631,755,339 - 31,756,182 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01633,258,020 - 33,258,868 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11631,353,810 - 31,354,679 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01631,932,917 - 31,933,500 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01631,971,480 - 31,972,328 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in LOC100685953
19 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 1 2 3 4 2
Below cutoff 4 5 20 6 6 6 3 6 12 8 6 4

Sequence


Reference Sequences
RefSeq Acc Id: XM_038452223   ⟹   XP_038308151
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1631,755,339 - 31,756,182 (-)NCBI
RefSeq Acc Id: XM_038497665   ⟹   XP_038353593
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11631,353,810 - 31,354,679 (-)NCBI
RefSeq Acc Id: XM_038560140   ⟹   XP_038416068
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01631,971,480 - 31,972,328 (-)NCBI
RefSeq Acc Id: XM_038624184   ⟹   XP_038480112
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01631,932,917 - 31,933,500 (-)NCBI
RefSeq Acc Id: XM_038689939   ⟹   XP_038545867
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01633,258,020 - 33,258,868 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_038353593   ⟸   XM_038497665
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038480112   ⟸   XM_038624184
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038545867   ⟸   XM_038689939
- Peptide Label: isoform X1
- UniProtKB: A0A8P0P419 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038308151   ⟸   XM_038452223
- Peptide Label: isoform X1
- UniProtKB: A0A8P0P419 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038416068   ⟸   XM_038560140
- Peptide Label: isoform X1
- UniProtKB: A0A8P0P419 (UniProtKB/TrEMBL)
Protein Domains
GST C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003053 UniProtKB/TrEMBL
  ENSCAFG00845014651 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000004904.4 UniProtKB/TrEMBL
  ENSCAFT00845026209 ENTREZGENE
  ENSCAFT00845026209.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1050.10 UniProtKB/TrEMBL
  Glutaredoxin UniProtKB/TrEMBL
InterPro CLIC UniProtKB/TrEMBL
  CLIC-1 UniProtKB/TrEMBL
  Glutathione-S-Trfase_C-like UniProtKB/TrEMBL
  Glutathione-S-Trfase_C_sf UniProtKB/TrEMBL
  Glutathione_S-Trfase UniProtKB/TrEMBL
  Glutathione_S-Trfase_N UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
NCBI Gene LOC100685953 ENTREZGENE
PANTHER CHLORIDE INTRACELLULAR CHANNEL PROTEIN UniProtKB/TrEMBL
  CHLORIDE INTRACELLULAR CHANNEL PROTEIN 6-RELATED UniProtKB/TrEMBL
Pfam GST_C_2 UniProtKB/TrEMBL
  GST_N_2 UniProtKB/TrEMBL
PRINTS INTCLCHANNEL UniProtKB/TrEMBL
PROSITE GST_CTER UniProtKB/TrEMBL
Superfamily-SCOP SSF47616 UniProtKB/TrEMBL
  SSF52833 UniProtKB/TrEMBL
UniProt A0A8I3NY67_CANLF UniProtKB/TrEMBL
  A0A8P0P419 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-12 LOC100685953  chloride intracellular channel protein 1-like  LOC100685953  chloride intracellular channel protein 1 pseudogene  Symbol and/or name change 5135510 APPROVED