ZPR1 (ZPR1 zinc finger) - Rat Genome Database

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Gene: ZPR1 (ZPR1 zinc finger) Canis lupus familiaris
Analyze
Symbol: ZPR1
Name: ZPR1 zinc finger
RGD ID: 12321251
Description: ENCODES a protein that exhibits metal ion binding (inferred); receptor tyrosine kinase binding (inferred); translation initiation factor binding (inferred); INVOLVED IN DNA replication (ortholog); ASSOCIATED WITH Chromosome 11, Partial Trisomy 11q (ortholog); Dwarfism (ortholog); GROWTH RESTRICTION, HYPOPLASTIC KIDNEYS, ALOPECIA, AND DISTINCTIVE FACIES (ortholog); FOUND IN axon (inferred); Cajal body (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger protein 259; zinc finger protein ZPR1; ZNF259
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1516,778,803 - 16,787,493 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl516,778,832 - 16,787,105 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha516,830,973 - 16,839,827 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0516,725,521 - 16,734,375 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl516,725,519 - 16,734,197 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1516,862,383 - 16,871,236 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0516,764,960 - 16,773,814 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0516,808,093 - 16,816,950 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ZPR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1516,778,803 - 16,787,493 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl516,778,832 - 16,787,105 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha516,830,973 - 16,839,827 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0516,725,521 - 16,734,375 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl516,725,519 - 16,734,197 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1516,862,383 - 16,871,236 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0516,764,960 - 16,773,814 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0516,808,093 - 16,816,950 (+)NCBIUU_Cfam_GSD_1.0
ZPR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811116,773,799 - 116,788,023 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11116,773,799 - 116,788,039 (-)EnsemblGRCh38hg38GRCh38
GRCh3711116,644,515 - 116,658,739 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611116,154,486 - 116,163,949 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411116,154,486 - 116,163,949NCBI
Celera11113,804,668 - 113,814,129 (-)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11112,581,245 - 112,590,732 (-)NCBIHuRef
CHM1_111116,533,917 - 116,543,379 (-)NCBICHM1_1
T2T-CHM13v2.011116,788,425 - 116,802,647 (-)NCBIT2T-CHM13v2.0
Zpr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39946,184,362 - 46,193,941 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl946,184,362 - 46,193,941 (+)EnsemblGRCm39 Ensembl
GRCm38946,273,064 - 46,282,643 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl946,273,064 - 46,282,643 (+)EnsemblGRCm38mm10GRCm38
MGSCv37946,081,147 - 46,090,726 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36946,024,161 - 46,032,597 (+)NCBIMGSCv36mm8
Celera943,562,072 - 43,571,685 (+)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map925.38NCBI
Zpr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8855,461,839 - 55,471,413 (+)NCBIGRCr8
mRatBN7.2846,564,898 - 46,574,719 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl846,565,146 - 46,574,719 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx852,066,497 - 52,076,063 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0850,345,269 - 50,354,835 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0848,209,543 - 48,219,109 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0850,563,047 - 50,572,621 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl850,563,047 - 50,572,621 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0849,189,009 - 49,198,583 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4849,257,107 - 49,266,681 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera846,146,914 - 46,156,613 (+)NCBICelera
Cytogenetic Map8q22NCBI
Zpr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541218,116,531 - 18,127,552 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541218,117,957 - 18,127,552 (-)NCBIChiLan1.0ChiLan1.0
ZPR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29117,479,213 - 117,489,052 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111118,584,442 - 118,594,266 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011111,613,940 - 111,623,539 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111115,547,951 - 115,557,883 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11115,547,973 - 115,557,883 (-)Ensemblpanpan1.1panPan2
Zpr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494799,136,639 - 99,146,064 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365422,056,905 - 2,067,542 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365422,058,048 - 2,067,468 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZPR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl944,167,423 - 44,177,435 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1944,167,422 - 44,178,137 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2949,241,411 - 49,250,617 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZPR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11108,144,247 - 108,153,533 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1108,144,609 - 108,153,480 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604317,895,518 - 17,904,802 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zpr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478412,202,519 - 12,213,120 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478412,202,519 - 12,212,257 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZPR1
115 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3 21 5 5 5 6 12 8 10 6
Low 2 5 1 1 1 1 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000021222   ⟹   ENSCAFP00000019707
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl516,778,832 - 16,787,105 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845007778   ⟹   ENSCAFP00845006160
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl516,725,519 - 16,734,197 (+)Ensembl
RefSeq Acc Id: XM_038474934   ⟹   XP_038330862
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1516,862,383 - 16,871,236 (+)NCBI
RefSeq Acc Id: XM_038536059   ⟹   XP_038391987
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0516,808,093 - 16,816,950 (+)NCBI
RefSeq Acc Id: XM_038600253   ⟹   XP_038456181
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0516,764,960 - 16,773,814 (+)NCBI
RefSeq Acc Id: XM_038664803   ⟹   XP_038520731
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0516,725,521 - 16,734,375 (+)NCBI
RefSeq Acc Id: XM_845219   ⟹   XP_850312
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1516,778,806 - 16,787,493 (+)NCBI
Dog10K_Boxer_Tasha516,830,973 - 16,839,827 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002626432
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1516,778,803 - 16,787,493 (+)NCBI
Dog10K_Boxer_Tasha516,830,973 - 16,839,827 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005325367
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1516,862,383 - 16,871,236 (+)NCBI
RefSeq Acc Id: XR_005359213
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0516,808,093 - 16,816,950 (+)NCBI
RefSeq Acc Id: XR_005393750
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0516,764,960 - 16,773,814 (+)NCBI
RefSeq Acc Id: XR_005426828
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0516,725,521 - 16,734,375 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_850312   ⟸   XM_845219
- UniProtKB: A0A8P0SI18 (UniProtKB/TrEMBL),   A0A8C0JLK8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000019707   ⟸   ENSCAFT00000021222
RefSeq Acc Id: XP_038330862   ⟸   XM_038474934
RefSeq Acc Id: XP_038456181   ⟸   XM_038600253
RefSeq Acc Id: XP_038520731   ⟸   XM_038664803
- UniProtKB: A0A8C0MHI6 (UniProtKB/TrEMBL),   A0A8I3MXA1 (UniProtKB/TrEMBL),   A0A8C0JLK8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391987   ⟸   XM_038536059
- UniProtKB: A0A8C0JLK8 (UniProtKB/TrEMBL),   A0A8C0MHI6 (UniProtKB/TrEMBL),   A0A8I3MXA1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845006160   ⟸   ENSCAFT00845007778
Protein Domains
Zinc finger ZPR1-type

Promoters
RGD ID:13683148
Promoter ID:EPDNEW_C1215
Type:initiation region
Name:ZPR1_1
Description:ZPR1 zinc finger
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1516,778,819 - 16,778,879EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000031562 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030006231 UniProtKB/TrEMBL
  ENSCAFG00040002897 UniProtKB/TrEMBL
  ENSCAFG00845004318 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000021222.5 UniProtKB/TrEMBL
  ENSCAFT00030011513.1 UniProtKB/TrEMBL
  ENSCAFT00040005511.1 UniProtKB/TrEMBL
  ENSCAFT00845007778 ENTREZGENE
  ENSCAFT00845007778.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.25.420 UniProtKB/TrEMBL
  2.60.120.1040 UniProtKB/TrEMBL
InterPro Znf_ZPR1 UniProtKB/TrEMBL
  ZPR1 UniProtKB/TrEMBL
  ZPR1_A/B_dom UniProtKB/TrEMBL
  ZPR1_Znf1/2 UniProtKB/TrEMBL
KEGG Report cfa:479428 UniProtKB/TrEMBL
NCBI Gene ZPR1 ENTREZGENE
PANTHER PTHR10876 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN ZPR1 UniProtKB/TrEMBL
Pfam zf-ZPR1 UniProtKB/TrEMBL
SMART Zpr1 UniProtKB/TrEMBL
UniProt A0A8C0JLK8 ENTREZGENE
  A0A8C0MHI6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MXA1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SI18 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:48846 ENTREZGENE