RUFY1 (RUN and FYVE domain containing 1) - Rat Genome Database

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Gene: RUFY1 (RUN and FYVE domain containing 1) Canis lupus familiaris
Analyze
Symbol: RUFY1
Name: RUN and FYVE domain containing 1
RGD ID: 12318345
Description: ENCODES a protein that exhibits identical protein binding (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN early endosome to Golgi transport (ortholog); endosomal vesicle fusion (ortholog); protein transport (ortholog); ASSOCIATED WITH Ehlers-Danlos syndrome dermatosparaxis type (ortholog); frontotemporal dementia and/or amyotrophic lateral sclerosis 1 (ortholog); Sotos syndrome (ortholog); FOUND IN cytosol (ortholog); early endosome membrane (ortholog); late endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RUN and FYVE domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1112,062,623 - 2,127,613 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl112,052,901 - 2,127,746 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha112,185,367 - 2,250,065 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0112,036,939 - 2,101,959 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl112,036,949 - 2,101,950 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1112,008,407 - 2,073,373 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0112,087,009 - 2,151,921 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0112,327,760 - 2,392,746 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RUFY1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1112,062,623 - 2,127,613 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl112,052,901 - 2,127,746 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha112,185,367 - 2,250,065 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0112,036,939 - 2,101,959 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl112,036,949 - 2,101,950 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1112,008,407 - 2,073,373 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0112,087,009 - 2,151,921 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0112,327,760 - 2,392,746 (-)NCBIUU_Cfam_GSD_1.0
RUFY1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385179,550,554 - 179,610,012 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5179,550,554 - 179,610,012 (+)EnsemblGRCh38hg38GRCh38
GRCh375178,977,555 - 179,037,013 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365178,910,177 - 178,969,625 (+)NCBINCBI36Build 36hg18NCBI36
Build 345178,910,192 - 178,969,618NCBI
Celera5174,612,171 - 174,665,953 (+)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5173,702,360 - 173,763,921 (+)NCBIHuRef
CHM1_15178,410,045 - 178,469,474 (+)NCBICHM1_1
T2T-CHM13v2.05180,103,365 - 180,164,461 (+)NCBIT2T-CHM13v2.0
Rufy1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391150,280,113 - 50,322,101 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1150,280,113 - 50,321,952 (-)EnsemblGRCm39 Ensembl
GRCm381150,389,286 - 50,431,274 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1150,389,286 - 50,431,125 (-)EnsemblGRCm38mm10GRCm38
MGSCv371150,202,805 - 50,244,613 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361150,232,726 - 50,274,534 (-)NCBIMGSCv36mm8
Celera1154,949,903 - 54,991,689 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1130.57NCBI
Rufy1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81035,206,801 - 35,251,696 (-)NCBIGRCr8
mRatBN7.21034,705,741 - 34,750,644 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1034,705,741 - 34,750,644 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1039,378,111 - 39,422,479 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0107,917,367 - 7,961,715 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01034,371,793 - 34,416,163 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01035,882,805 - 35,927,268 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1035,882,805 - 35,927,268 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01035,653,747 - 35,698,367 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41035,933,369 - 35,977,968 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11035,934,430 - 35,979,017 (-)NCBI
Celera1034,055,043 - 34,099,309 (-)NCBICelera
Cytogenetic Map10q22NCBI
Rufy1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955408947,317 - 982,333 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955408946,842 - 991,717 (-)NCBIChiLan1.0ChiLan1.0
RUFY1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24174,487,825 - 174,549,376 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15172,627,363 - 172,688,915 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05174,699,240 - 174,760,876 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15181,978,596 - 182,039,825 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5181,978,601 - 182,039,332 (+)Ensemblpanpan1.1panPan2
Rufy1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213119,938,899 - 119,996,308 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367391,148,689 - 1,206,064 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367391,148,676 - 1,206,485 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RUFY1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl278,963,989 - 79,021,574 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1278,974,361 - 79,021,677 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2280,540,978 - 80,588,604 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RUFY1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12381,260,109 - 81,326,818 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2381,269,663 - 81,330,154 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607512,622,380 - 12,694,016 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rufy1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473342,490,851 - 42,537,436 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473342,490,864 - 42,537,431 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RUFY1
407 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 16 6 6 10 10 2
Low 1 5 6 6 6 6 2 8 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005626303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005626304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005626305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005626306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038489740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038489741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038489742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038489743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038489744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038551760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038551761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038551762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038551764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038551765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038615647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038615648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038615649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038615650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038615651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038681135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038681136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038681138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038681139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038681140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_843736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000000538   ⟹   ENSCAFP00000000488
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl112,063,018 - 2,127,720 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000047107   ⟹   ENSCAFP00000038523
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl112,063,018 - 2,127,720 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000061775   ⟹   ENSCAFP00000051161
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl112,063,018 - 2,118,022 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000067831   ⟹   ENSCAFP00000058858
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl112,063,018 - 2,127,746 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000067842   ⟹   ENSCAFP00000054665
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl112,063,018 - 2,117,772 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000068946   ⟹   ENSCAFP00000050672
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl112,052,901 - 2,127,720 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000072632   ⟹   ENSCAFP00000053571
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl112,063,018 - 2,118,022 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000086353   ⟹   ENSCAFP00000051601
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl112,052,901 - 2,127,720 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000092106   ⟹   ENSCAFP00000065066
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl112,063,018 - 2,117,772 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845014896   ⟹   ENSCAFP00845011547
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl112,036,949 - 2,101,546 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845014991   ⟹   ENSCAFP00845011626
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl112,036,951 - 2,101,950 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845015066   ⟹   ENSCAFP00845011691
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl112,036,951 - 2,101,950 (-)Ensembl
RefSeq Acc Id: XM_005626303   ⟹   XP_005626360
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1112,064,261 - 2,127,613 (-)NCBI
Dog10K_Boxer_Tasha112,187,001 - 2,250,065 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005626304   ⟹   XP_005626361
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1112,062,623 - 2,117,890 (-)NCBI
Dog10K_Boxer_Tasha112,185,367 - 2,240,411 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005626305   ⟹   XP_005626362
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1112,062,623 - 2,127,241 (-)NCBI
Dog10K_Boxer_Tasha112,185,367 - 2,249,700 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005626306   ⟹   XP_005626363
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1112,062,623 - 2,117,853 (-)NCBI
Dog10K_Boxer_Tasha112,185,367 - 2,240,371 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038489740   ⟹   XP_038345668
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1112,008,407 - 2,063,648 (-)NCBI
RefSeq Acc Id: XM_038489741   ⟹   XP_038345669
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1112,008,407 - 2,063,688 (-)NCBI
RefSeq Acc Id: XM_038489742   ⟹   XP_038345670
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1112,008,407 - 2,073,014 (-)NCBI
RefSeq Acc Id: XM_038489743   ⟹   XP_038345671
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1112,008,407 - 2,073,373 (-)NCBI
RefSeq Acc Id: XM_038489744   ⟹   XP_038345672
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1112,010,041 - 2,063,648 (-)NCBI
RefSeq Acc Id: XM_038551760   ⟹   XP_038407688
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0112,327,760 - 2,392,745 (-)NCBI
RefSeq Acc Id: XM_038551761   ⟹   XP_038407689
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0112,329,394 - 2,392,746 (-)NCBI
RefSeq Acc Id: XM_038551762   ⟹   XP_038407690
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0112,327,760 - 2,383,005 (-)NCBI
RefSeq Acc Id: XM_038551764   ⟹   XP_038407692
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0112,327,760 - 2,383,045 (-)NCBI
RefSeq Acc Id: XM_038551765   ⟹   XP_038407693
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0112,327,760 - 2,392,382 (-)NCBI
RefSeq Acc Id: XM_038615647   ⟹   XP_038471575
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0112,087,009 - 2,151,920 (-)NCBI
RefSeq Acc Id: XM_038615648   ⟹   XP_038471576
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0112,088,640 - 2,151,921 (-)NCBI
RefSeq Acc Id: XM_038615649   ⟹   XP_038471577
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0112,087,009 - 2,142,225 (-)NCBI
RefSeq Acc Id: XM_038615650   ⟹   XP_038471578
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0112,087,009 - 2,142,264 (-)NCBI
RefSeq Acc Id: XM_038615651   ⟹   XP_038471579
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0112,087,009 - 2,151,557 (-)NCBI
RefSeq Acc Id: XM_038681135   ⟹   XP_038537063
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0112,036,939 - 2,101,958 (-)NCBI
RefSeq Acc Id: XM_038681136   ⟹   XP_038537064
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0112,038,573 - 2,101,959 (-)NCBI
RefSeq Acc Id: XM_038681138   ⟹   XP_038537066
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0112,036,939 - 2,092,204 (-)NCBI
RefSeq Acc Id: XM_038681139   ⟹   XP_038537067
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0112,036,939 - 2,092,244 (-)NCBI
RefSeq Acc Id: XM_038681140   ⟹   XP_038537068
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0112,036,939 - 2,101,595 (-)NCBI
RefSeq Acc Id: XM_843736   ⟹   XP_848829
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1112,062,623 - 2,127,612 (-)NCBI
Dog10K_Boxer_Tasha112,185,367 - 2,250,063 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005626360 (Get FASTA)   NCBI Sequence Viewer  
  XP_005626361 (Get FASTA)   NCBI Sequence Viewer  
  XP_005626362 (Get FASTA)   NCBI Sequence Viewer  
  XP_005626363 (Get FASTA)   NCBI Sequence Viewer  
  XP_038345668 (Get FASTA)   NCBI Sequence Viewer  
  XP_038345669 (Get FASTA)   NCBI Sequence Viewer  
  XP_038345670 (Get FASTA)   NCBI Sequence Viewer  
  XP_038345671 (Get FASTA)   NCBI Sequence Viewer  
  XP_038345672 (Get FASTA)   NCBI Sequence Viewer  
  XP_038407688 (Get FASTA)   NCBI Sequence Viewer  
  XP_038407689 (Get FASTA)   NCBI Sequence Viewer  
  XP_038407690 (Get FASTA)   NCBI Sequence Viewer  
  XP_038407692 (Get FASTA)   NCBI Sequence Viewer  
  XP_038407693 (Get FASTA)   NCBI Sequence Viewer  
  XP_038471575 (Get FASTA)   NCBI Sequence Viewer  
  XP_038471576 (Get FASTA)   NCBI Sequence Viewer  
  XP_038471577 (Get FASTA)   NCBI Sequence Viewer  
  XP_038471578 (Get FASTA)   NCBI Sequence Viewer  
  XP_038471579 (Get FASTA)   NCBI Sequence Viewer  
  XP_038537063 (Get FASTA)   NCBI Sequence Viewer  
  XP_038537064 (Get FASTA)   NCBI Sequence Viewer  
  XP_038537066 (Get FASTA)   NCBI Sequence Viewer  
  XP_038537067 (Get FASTA)   NCBI Sequence Viewer  
  XP_038537068 (Get FASTA)   NCBI Sequence Viewer  
  XP_848829 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000000488.5
  ENSCAFP00000038523.2
  ENSCAFP00000053571.2
  ENSCAFP00030009862.1
  ENSCAFP00030010266.1
  ENSCAFP00040014190.1
  ENSCAFP00040014348.1
  ENSCAFP00040014382.1
  ENSCAFP00040014476.1
  ENSCAFP00040014589.1
  ENSCAFP00040014721.1
  ENSCAFP00845011547
  ENSCAFP00845011547.1
  ENSCAFP00845011626.1
  ENSCAFP00845011691
  ENSCAFP00845011691.1
RefSeq Acc Id: XP_848829   ⟸   XM_843736
- Peptide Label: isoform X1
- UniProtKB: A0A8P0SSY7 (UniProtKB/TrEMBL),   A0A8P0N3M8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005626362   ⟸   XM_005626305
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JQH7 (UniProtKB/TrEMBL),   A0A8C0YRE9 (UniProtKB/TrEMBL),   A0A8I3RW37 (UniProtKB/TrEMBL),   A0A8C0S243 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005626361   ⟸   XM_005626304
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JQH7 (UniProtKB/TrEMBL),   A0A8C0YRE9 (UniProtKB/TrEMBL),   A0A8I3RW37 (UniProtKB/TrEMBL),   A0A8C0S243 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005626363   ⟸   XM_005626306
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JQH7 (UniProtKB/TrEMBL),   A0A8C0YRE9 (UniProtKB/TrEMBL),   A0A8I3RW37 (UniProtKB/TrEMBL),   A0A8C0S243 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005626360   ⟸   XM_005626303
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RDY7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000050672   ⟸   ENSCAFT00000068946
RefSeq Acc Id: ENSCAFP00000054665   ⟸   ENSCAFT00000067842
RefSeq Acc Id: ENSCAFP00000058858   ⟸   ENSCAFT00000067831
RefSeq Acc Id: ENSCAFP00000000488   ⟸   ENSCAFT00000000538
RefSeq Acc Id: ENSCAFP00000051601   ⟸   ENSCAFT00000086353
RefSeq Acc Id: ENSCAFP00000038523   ⟸   ENSCAFT00000047107
RefSeq Acc Id: ENSCAFP00000053571   ⟸   ENSCAFT00000072632
RefSeq Acc Id: ENSCAFP00000065066   ⟸   ENSCAFT00000092106
RefSeq Acc Id: ENSCAFP00000051161   ⟸   ENSCAFT00000061775
RefSeq Acc Id: XP_038345671   ⟸   XM_038489743
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038345670   ⟸   XM_038489742
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038345669   ⟸   XM_038489741
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038345668   ⟸   XM_038489740
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038345672   ⟸   XM_038489744
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038471575   ⟸   XM_038615647
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038471579   ⟸   XM_038615651
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038471578   ⟸   XM_038615650
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038471577   ⟸   XM_038615649
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038471576   ⟸   XM_038615648
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038537063   ⟸   XM_038681135
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NKP5 (UniProtKB/TrEMBL),   A0A8I3N3X3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038537068   ⟸   XM_038681140
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JQH7 (UniProtKB/TrEMBL),   A0A8C0YRE9 (UniProtKB/TrEMBL),   A0A8I3RW37 (UniProtKB/TrEMBL),   A0A8C0S243 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038537067   ⟸   XM_038681139
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JQH7 (UniProtKB/TrEMBL),   A0A8C0YRE9 (UniProtKB/TrEMBL),   A0A8I3RW37 (UniProtKB/TrEMBL),   A0A8C0S243 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038537066   ⟸   XM_038681138
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JQH7 (UniProtKB/TrEMBL),   A0A8C0YRE9 (UniProtKB/TrEMBL),   A0A8I3RW37 (UniProtKB/TrEMBL),   A0A8C0S243 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038537064   ⟸   XM_038681136
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RDY7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038407688   ⟸   XM_038551760
- Peptide Label: isoform X1
- UniProtKB: A0A8I3N3X3 (UniProtKB/TrEMBL),   A0A8I3NKP5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038407693   ⟸   XM_038551765
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JQH7 (UniProtKB/TrEMBL),   A0A8C0S243 (UniProtKB/TrEMBL),   A0A8C0YRE9 (UniProtKB/TrEMBL),   A0A8I3RW37 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038407692   ⟸   XM_038551764
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JQH7 (UniProtKB/TrEMBL),   A0A8C0S243 (UniProtKB/TrEMBL),   A0A8C0YRE9 (UniProtKB/TrEMBL),   A0A8I3RW37 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038407690   ⟸   XM_038551762
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JQH7 (UniProtKB/TrEMBL),   A0A8C0S243 (UniProtKB/TrEMBL),   A0A8C0YRE9 (UniProtKB/TrEMBL),   A0A8I3RW37 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038407689   ⟸   XM_038551761
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RDY7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845011626   ⟸   ENSCAFT00845014991
RefSeq Acc Id: ENSCAFP00845011547   ⟸   ENSCAFT00845014896
RefSeq Acc Id: ENSCAFP00845011691   ⟸   ENSCAFT00845015066
Protein Domains
FYVE-type   RUN

Promoters
RGD ID:13685128
Promoter ID:EPDNEW_C3196
Type:single initiation site
Name:RUFY1_1
Description:RUN and FYVE domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1112,127,600 - 2,127,660EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000000344 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030006112 UniProtKB/TrEMBL
  ENSCAFG00040008668 UniProtKB/TrEMBL
  ENSCAFG00845008457 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000000538.5 UniProtKB/TrEMBL
  ENSCAFT00000047107.4 UniProtKB/TrEMBL
  ENSCAFT00000072632.2 UniProtKB/TrEMBL
  ENSCAFT00030011281.1 UniProtKB/TrEMBL
  ENSCAFT00030011726.1 UniProtKB/TrEMBL
  ENSCAFT00040016376.1 UniProtKB/TrEMBL
  ENSCAFT00040016552.1 UniProtKB/TrEMBL
  ENSCAFT00040016592.1 UniProtKB/TrEMBL
  ENSCAFT00040016706.1 UniProtKB/TrEMBL
  ENSCAFT00040016833.1 UniProtKB/TrEMBL
  ENSCAFT00040016986.1 UniProtKB/TrEMBL
  ENSCAFT00845014896 ENTREZGENE
  ENSCAFT00845014896.1 UniProtKB/TrEMBL
  ENSCAFT00845014991.1 UniProtKB/TrEMBL
  ENSCAFT00845015066 ENTREZGENE
  ENSCAFT00845015066.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  1.20.58.900 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro FYVE_RUFY1 UniProtKB/TrEMBL
  RUFY1-3 UniProtKB/TrEMBL
  Run_dom UniProtKB/TrEMBL
  Run_dom_sf UniProtKB/TrEMBL
  RUN_RUFY1 UniProtKB/TrEMBL
  Znf_FYVE UniProtKB/TrEMBL
  Znf_FYVE-rel UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene RUFY1 ENTREZGENE
PANTHER RUN AND FYVE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN UniProtKB/TrEMBL
Pfam FYVE UniProtKB/TrEMBL
  RUN UniProtKB/TrEMBL
PROSITE RUN UniProtKB/TrEMBL
  ZF_FYVE UniProtKB/TrEMBL
SMART FYVE UniProtKB/TrEMBL
  RUN UniProtKB/TrEMBL
Superfamily-SCOP SSF140741 UniProtKB/TrEMBL
  SSF57903 UniProtKB/TrEMBL
UniProt A0A8C0JQH7 ENTREZGENE
  A0A8C0MGE6_CANLF UniProtKB/TrEMBL
  A0A8C0QHB1_CANLF UniProtKB/TrEMBL
  A0A8C0RDY7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0S179_CANLF UniProtKB/TrEMBL
  A0A8C0S1T2_CANLF UniProtKB/TrEMBL
  A0A8C0S243 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0YRE9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N3X3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NKP5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RW37 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0N3M8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SSY7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:45803 ENTREZGENE