SCP2 (sterol carrier protein 2) - Rat Genome Database

Name: SCP2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: SCP2 (sterol carrier protein 2) Canis lupus familiaris

Analyze

Symbol:

SCP2

Name:

sterol carrier protein 2

RGD ID:

12314764

Description:

ENCODES a protein that exhibits acetyl-CoA C-acyltransferase activity (ortholog); acetyl-CoA C-myristoyltransferase activity (ortholog); cholesterol transfer activity (ortholog); INVOLVED IN bile acid metabolic process (ortholog); cellular response to cholesterol (ortholog); fatty acid beta-oxidation (ortholog); PARTICIPATES IN bile acid biosynthetic pathway; cerebrotendinous xanthomatosis pathway; congenital bile acid synthesis defect pathway; ASSOCIATED WITH dystonia (ortholog); Experimental Diabetes Mellitus (ortholog); leukodystrophy (ortholog); FOUND IN endoplasmic reticulum (ortholog); peroxisomal matrix (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

non-specific lipid-transfer protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SCP2 (sterol carrier protein 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Scp2 (sterol carrier protein 2, liver)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Scp2 (sterol carrier protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Scp2 (sterol carrier protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SCP2 (sterol carrier protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Scp2 (sterol carrier protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SCP2 (sterol carrier protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SCP2 (sterol carrier protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Scp2 (sterol carrier protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	55,860,053 - 55,971,657 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	55,860,549 - 55,964,014 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	55,925,974 - 56,029,762 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	56,049,398 - 56,153,726 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	56,049,398 - 56,153,708 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	56,041,491 - 56,145,154 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	55,932,897 - 56,036,796 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	56,322,159 - 56,425,975 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

dystonia (ISO)

Experimental Diabetes Mellitus (ISO)

leukodystrophy (ISO)

Leukoencephalopathies (ISO)

Leukoencephalopathy with Dystonia and Motor Neuropathy (ISO)

polyneuropathy (ISO)

sensorineural hearing loss (ISO)

Zellweger syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

bile acid metabolic process (ISO)

cellular response to cholesterol (ISO)

fatty acid beta-oxidation (ISO)

inositol trisphosphate biosynthetic process (ISO)

intracellular cholesterol transport (ISO)

lipid hydroperoxide transport (IEA)

lipid transport (IEA)

phospholipid transport (ISO)

positive regulation of apoptotic process (ISO)

positive regulation of cholesterol biosynthetic process (ISO)

positive regulation of cholesterol import (ISO)

positive regulation of intracellular cholesterol transport (IEA)

positive regulation of steroid biosynthetic process (ISO)

positive regulation of steroid metabolic process (ISO)

progesterone biosynthetic process (ISO)

protein localization to plasma membrane (ISO)

regulation of phospholipid biosynthetic process (ISO)

response to estradiol (ISO)

response to luteinizing hormone (ISO)

steroid biosynthetic process (ISO)

Cellular Component

cytoplasm (IEA)

endoplasmic reticulum (ISO)

mitochondrion (IEA)

nucleoplasm (IEA)

peroxisomal matrix (ISO)

peroxisome (IEA)

protein-containing complex (IEA)

Molecular Function

acetyl-CoA C-acyltransferase activity (ISO)

acetyl-CoA C-myristoyltransferase activity (ISO)

acyltransferase activity (IEA)

acyltransferase activity, transferring groups other than amino-acyl groups (IEA)

cholesterol binding (IEA)

cholesterol transfer activity (ISO)

fatty-acyl-CoA binding (IEA)

identical protein binding (ISO)

lipid binding (IEA)

long-chain fatty acyl-CoA binding (IEA)

oleic acid binding (IEA)

phosphatidylcholine transfer activity (ISO)

phosphatidylethanolamine transfer activity (ISO)

phosphatidylinositol transfer activity (ISO)

propionyl-CoA C2-trimethyltridecanoyltransferase activity (ISO)

protein binding (ISO)

protein-containing complex binding (ISO)

signaling receptor binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

bile acid biosynthetic pathway (ISO)

cerebrotendinous xanthomatosis pathway (ISO)

congenital bile acid synthesis defect pathway (ISO)

familial hypercholanemia pathway (ISO)

Zellweger syndrome pathway (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

SCP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	55,860,053 - 55,971,657 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	55,860,549 - 55,964,014 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	55,925,974 - 56,029,762 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	56,049,398 - 56,153,726 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	56,049,398 - 56,153,708 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	56,041,491 - 56,145,154 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	55,932,897 - 56,036,796 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	56,322,159 - 56,425,975 (-)	NCBI		UU_Cfam_GSD_1.0

SCP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	52,927,276 - 53,051,698 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	52,927,276 - 53,051,698 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	53,392,948 - 53,517,370 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	53,165,536 - 53,289,870 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	53,104,968 - 53,229,303	NCBI
Celera	1	51,680,710 - 51,805,264 (+)	NCBI		Celera
Cytogenetic Map	1	p32.3	NCBI
HuRef	1	51,508,548 - 51,632,772 (+)	NCBI		HuRef
CHM1_1	1	53,510,076 - 53,634,447 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	52,808,787 - 52,933,201 (+)	NCBI		T2T-CHM13v2.0

Scp2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	107,901,027 - 108,002,168 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	107,901,036 - 108,002,195 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	108,043,830 - 108,144,971 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	108,043,839 - 108,144,998 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	107,716,444 - 107,791,104 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	107,541,771 - 107,616,433 (-)	NCBI		MGSCv36	mm8
Celera	4	106,393,462 - 106,469,326 (-)	NCBI		Celera
Cytogenetic Map	4	C7	NCBI
cM Map	4	50.2	NCBI

Scp2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	128,035,714 - 128,110,015 (-)	NCBI		GRCr8
mRatBN7.2	5	122,806,949 - 122,881,259 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	122,776,549 - 122,881,287 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	125,426,714 - 125,500,816 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	127,149,765 - 127,223,865 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	127,201,077 - 127,275,181 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	127,647,934 - 127,735,703 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	127,620,274 - 127,735,739 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	131,495,401 - 131,584,291 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	129,152,836 - 129,230,401 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	129,158,061 - 129,235,617 (-)	NCBI
Celera	5	121,551,168 - 121,624,570 (-)	NCBI		Celera
Cytogenetic Map	5	q34	NCBI

Scp2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	6,094,758 - 6,224,287 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	6,097,241 - 6,224,287 (-)	NCBI	ChiLan1.0	ChiLan1.0

SCP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	173,786,509 - 173,915,204 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	172,927,259 - 173,057,399 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	52,195,491 - 52,324,227 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	53,797,256 - 53,924,939 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	53,797,254 - 53,924,939 (+)	Ensembl	panpan1.1		panPan2

Scp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	67,305,291 - 67,411,787 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936522	8,005,442 - 8,110,889 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936522	8,004,503 - 8,110,995 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SCP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	6	159,191,045 - 159,314,985 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	147,007,365 - 147,077,789 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SCP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	79,868,825 - 79,993,906 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	79,865,332 - 79,993,835 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	37,285,653 - 37,412,244 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Scp2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624859	107,258 - 252,756 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624859	106,405 - 252,870 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SCP2
971 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	5	5	22	6	6	6	6	6	12		10	6
Low										8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_022418866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038476342	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038476343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038521201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038537506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038601656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038601657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038666224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038666225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_860991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000046744 ⟹ ENSCAFP00000041481

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	5	55,860,549 - 55,964,014 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000091004 ⟹ ENSCAFP00000054579

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	5	55,860,549 - 55,964,014 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845032173 ⟹ ENSCAFP00845025151

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	5	56,049,398 - 56,153,708 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845032277 ⟹ ENSCAFP00845025231

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	5	56,049,398 - 56,153,708 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845032428 ⟹ ENSCAFP00845025354

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	5	56,049,398 - 56,153,708 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845032550 ⟹ ENSCAFP00845025455

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	5	56,060,283 - 56,153,708 (-)	Ensembl

RefSeq Acc Id:

XM_038476342 ⟹ XP_038332270

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	5	56,041,491 - 56,145,154 (-)	NCBI

RefSeq Acc Id:

XM_038476343 ⟹ XP_038332271

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	5	56,041,491 - 56,144,648 (-)	NCBI

RefSeq Acc Id:

XM_038521201 ⟹ XP_038377129

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	5	55,925,974 - 56,029,258 (-)	NCBI

RefSeq Acc Id:

XM_038537506 ⟹ XP_038393434

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	5	56,322,159 - 56,425,975 (-)	NCBI

RefSeq Acc Id:

XM_038601656 ⟹ XP_038457584

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	5	55,932,897 - 56,036,796 (-)	NCBI

RefSeq Acc Id:

XM_038601657 ⟹ XP_038457585

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	5	55,932,897 - 56,036,298 (-)	NCBI

RefSeq Acc Id:

XM_038666224 ⟹ XP_038522152

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	5	56,049,398 - 56,153,726 (-)	NCBI

RefSeq Acc Id:

XM_038666225 ⟹ XP_038522153

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	5	56,049,398 - 56,153,215 (-)	NCBI

RefSeq Acc Id:

XM_860991 ⟹ XP_866084

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	55,860,053 - 55,964,043 (-)	NCBI
Dog10K_Boxer_Tasha	5	55,925,974 - 56,029,762 (-)	NCBI

Sequence:

show sequence

GCCCGCGTCGCCGCAGCCTCAGTCCGTGCGCGCGCACGTCAGCGGCTCCAGGGTCTGCCGCTCT
CGCCTCCGCCGGGCACGTCTGAGCCAACCCTATGGCGTCTCGATCTGGGGCCCTGCGCCGGGTG
TTCGTGGTGGGGGTTGGGATGACCAAGTTCCTGAAGCCTGGAGTTGAGAATTTAGACTACCCTG
ACTTGGCAAGAGAAGCAGGCCAGAAGGCTTTAGCTGATGCACAGATCCCTTATTCGGTAGTGGA
ACAGGCATGTATTGGCTACGTTTATGGTAACTCTACCTGTGGGCAGAGGTCTATCTATCACAGT
TTGGGACTGACTGGAATTCCTATAATAAATGTCAACAATAACTGTGCCACTGGTTCTACTGCTT
TGTTTATGGCCCGGAATCTGATTCAGGGTGGTGTGGCAGATTGTGTCTTGGCTCTTGGGTTTGA
GAAGATGGAGAAGGGAGCCATTTTATTAAATTCTTCACAGAAGACCAATCCACTTGATAAGCAT
GTTGAGGTCTTCATCAATAAATATGGATTGTCTGCCAAACCAGTTGTTCCTCAGATGTTTGCAT
GTGCTGGAAAAGAGCACATGGAAAAATATGGAACAACAGTTAAACAGTTTGCGAAAATTGGATG
GAAAAATCATAAACATTCAGTTAATAACCCGAATTCCCAGTTCCAAAAGGAATTCAGTTTAGAC
GAAGTGATGACATCTCAAAACGTTTTTGATTTTTTGACCATCTTACAATGTTGCCCCACTTCAG
ATGGTGCTGCAGCAGCAGTTTTGGCTAGTGAACAATTTGTACAGAAGTACAACCTGCAATCCAA
AGCTGTGGAAATTTTGGCACAAGAGATGGTAACTGACTTGCCAAGTTCATTTGAAGAGAAAAGC
GTTATTAAAGCGGTTGGCTATGATATGAGTAAAGAAGCTGCCAAAAAGTGCTATGAGAAATCTG
GCCTGACACCAAGTGATATTGATGTTATAGAACTTCATGATTGCTTTTCTGTCAATGAACTCCT
TACTTATGAAGCACTGGGACTCTGTCCAGAAGGACGAGGTGGAGAACTGGTTGATAGGGGAGAT
AATACTTATGGAGGAAAGTGGGTCATAAATCCTAGCGGTGGATTAATTTCAAAGGGACATCCAC
TGGGAGCTACAGGTCTGGCTCAGTGCGCCGAGCTCTGCTGGCAGCTGAGAGGGGAAGCCGGAAA
GAGGCAAGTTCCCGGTGCAAAGGTTGCTCTGCAGCACAATCTAGGCATTGGAGGAGCCGTGGTT
GTGACGCTCTACAAGATGGGCTTTCCTGAAGCTGCCAGAACTCATCAGATTGAGGCTGTTCCAA
CCAGCTCTGCAGTTGATGGATTTAAGGCAAATTTGGTCTTTAAGGAGATTGAGAAGAAGCTTGA
AGAGGAAGGGGAAGAGTTTGTGAAGAAAATCGGTGGTATTTTTGCCTTCAAGGTGAAGAATGGC
CCTGAGGGGAAAGAAGCTACTTGGGTGGTGGATGTGAAAAACGGCAAAGGATCAGTGCTTCCTA
ACTCAGATAAGAAGGCCGACTGCACAATCACAATGGCTGACTCGGACTTACTGGCTTTAATGAC
TGGTAAAATGAATCCTCAGTCGGCCTTCTTTCAAGGCAAATTGAAAATCACTGGCAACATGGGT
CTGGCTATGAAGTTACAAAATCTTCAGCTTCAGCCAGGCAAAGCTAAGCTGTGAAGAACTCCCT
TTGCCTGCCTTTGAAAATTAAGATGAGATATATAGATATATATCCATATATTTCATTGTCAAGG
CTTGGATGGAAACTACACATTGGCAAACAGTGTGAGATTTGTCTTTAGTTGGGTGTGACCAATC
TTGTTTTTCCTAAGCTCGGGGTGGACAGAGCCTAATAGTGTACTACTGCTTGCTGAATTGCATA
GAACTGTGCATTACAAAGTTAATATGGTAATTATGGTTTGGGGTAAAACTGAGTTTCAGAATAA
AATTAGGAACAGCAAAATCTAAAAACTATGTAAACAGAAGCTCTCATTTTGCTTATAAAGTATG
TTTAAAGATCATTCTGCTGAAGATTCAATTTAAGTTTTCCTTTGGAGAACTAGGGAAGAAACCG
AATACCAGGAGCTGGCCAATAATTAGTGTTGTGCACTTAATGACTTTAATCTATTTTTCATTAA
TAGTTTTTAAAATTCTGTAGCGGGCTGTTTAAAAAAAAAAAAAAACTTAAATTTTGCATTTCAC
ACCATCAAAATGGTACTTTCTTCCCAAATCAAAATAAATCTGATCAGAGCCTGGGGTGGTGGCG
GGGAGTCTACAGCTGAATGCAGCCTATTTTTAAAGTAAAAATATTTTTTAAATGAGTTTCCTTC
TTGAAAAAAATCAGTGTATTGGTCAAAAAATGCTGTTGTTAAAAATAACTGAACAAATAAAGTT
TGCTTTGAGATGCACAGGTTTCAAAGTATAATCTCATATTTAATTCTGTAAAGCTCTCAGTCCC
TTGTTCTCATTTTCCTTTTTCATATAAGTTTAATTAATTATGCACATTTAATTTATCTTTCTTC
CTGTTTTTTCTAATGCTAATGTTATTTCTTATAACTCAGTAAGATACGGAGTAAAATAATGCTT
TTGGAAGAATGTTTAATAGAAAATTAAAATAGCTTTTCCTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038332270	(Get FASTA)	NCBI Sequence Viewer
	XP_038332271	(Get FASTA)	NCBI Sequence Viewer
	XP_038377129	(Get FASTA)	NCBI Sequence Viewer
	XP_038393434	(Get FASTA)	NCBI Sequence Viewer
	XP_038457584	(Get FASTA)	NCBI Sequence Viewer
	XP_038457585	(Get FASTA)	NCBI Sequence Viewer
	XP_038522152	(Get FASTA)	NCBI Sequence Viewer
	XP_038522153	(Get FASTA)	NCBI Sequence Viewer
	XP_866084	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000041481.1
	ENSCAFP00000054579.1
	ENSCAFP00000067868.1
	ENSCAFP00000068952.1
	ENSCAFP00030007304.1
	ENSCAFP00030007468.1
	ENSCAFP00030007515.1
	ENSCAFP00845025151
	ENSCAFP00845025151.1
	ENSCAFP00845025231.1
	ENSCAFP00845025354.1
	ENSCAFP00845025455.1

RefSeq Acc Id:	XP_866084 ⟸ XM_860991
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I3S339 (UniProtKB/TrEMBL), A0A8P0SVD2 (UniProtKB/TrEMBL), A0A8C0MHY6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASRSGALRRVFVVGVGMTKFLKPGVENLDYPDLAREAGQKALADAQIPYSVVEQACIGYVYGN STCGQRSIYHSLGLTGIPIINVNNNCATGSTALFMARNLIQGGVADCVLALGFEKMEKGAILLN SSQKTNPLDKHVEVFINKYGLSAKPVVPQMFACAGKEHMEKYGTTVKQFAKIGWKNHKHSVNNP NSQFQKEFSLDEVMTSQNVFDFLTILQCCPTSDGAAAAVLASEQFVQKYNLQSKAVEILAQEMV TDLPSSFEEKSVIKAVGYDMSKEAAKKCYEKSGLTPSDIDVIELHDCFSVNELLTYEALGLCPE GRGGELVDRGDNTYGGKWVINPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPGAKVAL QHNLGIGGAVVVTLYKMGFPEAARTHQIEAVPTSSAVDGFKANLVFKEIEKKLEEEGEEFVKKI GGIFAFKVKNGPEGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDLLALMTGKMNPQSAFF QGKLKITGNMGLAMKLQNLQLQPGKAKL hide sequence

RefSeq Acc Id:

ENSCAFP00000041481 ⟸ ENSCAFT00000046744

RefSeq Acc Id:

ENSCAFP00000054579 ⟸ ENSCAFT00000091004

RefSeq Acc Id:	XP_038332270 ⟸ XM_038476342
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038332271 ⟸ XM_038476343
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038457584 ⟸ XM_038601656
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038457585 ⟸ XM_038601657
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038522152 ⟸ XM_038666224
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I3S339 (UniProtKB/TrEMBL), A0A8P0SVD2 (UniProtKB/TrEMBL), A0A8C0MHY6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038522153 ⟸ XM_038666225
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0KHL0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038377129 ⟸ XM_038521201
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0KHL0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038393434 ⟸ XM_038537506
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0KHL0 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845025455 ⟸ ENSCAFT00845032550

RefSeq Acc Id:

ENSCAFP00845025231 ⟸ ENSCAFT00845032277

RefSeq Acc Id:

ENSCAFP00845025354 ⟸ ENSCAFT00845032428

RefSeq Acc Id:

ENSCAFP00845025151 ⟸ ENSCAFT00845032173

Protein Domains

SCP2 Thiolase C-terminal Thiolase N-terminal

Promoters

RGD ID:

13683326

Promoter ID:

EPDNEW_C1394

Type:

multiple initiation site

Name:

SCP2_1

Description:

sterol carrier protein 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	55,964,023 - 55,964,083	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000032423	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030004467	UniProtKB/TrEMBL
	ENSCAFG00845018123	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000046744.3	UniProtKB/TrEMBL
	ENSCAFT00000091004.2	UniProtKB/TrEMBL
	ENSCAFT00000106706.1	UniProtKB/TrEMBL
	ENSCAFT00000107346.1	UniProtKB/TrEMBL
	ENSCAFT00030008317.1	UniProtKB/TrEMBL
	ENSCAFT00030008503.1	UniProtKB/TrEMBL
	ENSCAFT00030008555.1	UniProtKB/TrEMBL
	ENSCAFT00845032173	ENTREZGENE
	ENSCAFT00845032173.1	UniProtKB/TrEMBL
	ENSCAFT00845032277.1	UniProtKB/TrEMBL
	ENSCAFT00845032428.1	UniProtKB/TrEMBL
	ENSCAFT00845032550.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1050.10	UniProtKB/TrEMBL
	3.40.47.10	UniProtKB/TrEMBL
InterPro	SCP2_sterol-bd_dom	UniProtKB/TrEMBL
	SCP2_sterol-bd_dom_sf	UniProtKB/TrEMBL
	Thiolase-like	UniProtKB/TrEMBL
	Thiolase_acyl_enz_int_AS	UniProtKB/TrEMBL
	Thiolase_C	UniProtKB/TrEMBL
	Thiolase_CS	UniProtKB/TrEMBL
	Thiolase_N	UniProtKB/TrEMBL
NCBI Gene	SCP2	ENTREZGENE
PANTHER	ACETYL-COA C-ACETYLTRANSFERASE	UniProtKB/TrEMBL
	NON-SPECIFIC LIPID-TRANSFER PROTEIN-LIKE 2	UniProtKB/TrEMBL
Pfam	SCP2	UniProtKB/TrEMBL
	Thiolase_C	UniProtKB/TrEMBL
	Thiolase_N	UniProtKB/TrEMBL
PROSITE	THIOLASE_1	UniProtKB/TrEMBL
	THIOLASE_2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53901	UniProtKB/TrEMBL
	SSF55718	UniProtKB/TrEMBL
UniProt	A0A8C0KHL0	ENTREZGENE
	A0A8C0M7D8_CANLF	UniProtKB/TrEMBL
	A0A8C0MB70_CANLF	UniProtKB/TrEMBL
	A0A8C0MHY6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NVG8_CANLF	UniProtKB/TrEMBL
	A0A8I3NVS7_CANLF	UniProtKB/TrEMBL
	A0A8I3P3Q7_CANLF	UniProtKB/TrEMBL
	A0A8I3S339	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0PI36_CANLF	UniProtKB/TrEMBL
	A0A8P0SVD2	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:45930	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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