NTNG1 (netrin G1) - Rat Genome Database

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Gene: NTNG1 (netrin G1) Canis lupus familiaris
Analyze
Symbol: NTNG1
Name: netrin G1
RGD ID: 12309543
Description: ENCODES a protein that exhibits cell adhesion molecule binding (inferred); cell-cell adhesion mediator activity (inferred); INVOLVED IN axonogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); bipolar disorder (ortholog); Colorectal Neoplasms (ortholog); FOUND IN glutamatergic synapse (ortholog); presynaptic active zone membrane (ortholog); Schaffer collateral - CA1 synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: netrin-G1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1644,091,368 - 44,407,118 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl644,092,043 - 44,403,799 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha646,876,321 - 47,191,139 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0644,370,414 - 44,691,951 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl644,369,892 - 44,689,279 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1644,103,380 - 44,424,632 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0644,072,563 - 44,386,000 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0644,504,683 - 44,821,791 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NTNG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1644,091,368 - 44,407,118 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl644,092,043 - 44,403,799 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha646,876,321 - 47,191,139 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0644,370,414 - 44,691,951 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl644,369,892 - 44,689,279 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1644,103,380 - 44,424,632 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0644,072,563 - 44,386,000 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0644,504,683 - 44,821,791 (-)NCBIUU_Cfam_GSD_1.0
NTNG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381107,140,088 - 107,484,923 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1107,140,007 - 107,484,923 (+)EnsemblGRCh38hg38GRCh38
GRCh371107,682,710 - 108,027,545 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361107,484,268 - 107,825,998 (+)NCBINCBI36Build 36hg18NCBI36
Build 341107,394,786 - 107,736,517NCBI
Celera1105,857,329 - 106,199,221 (+)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1105,628,484 - 105,970,399 (+)NCBIHuRef
CHM1_11107,797,518 - 108,139,409 (+)NCBICHM1_1
T2T-CHM13v2.01107,177,595 - 107,522,472 (+)NCBIT2T-CHM13v2.0
Ntng1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393109,687,366 - 110,057,291 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3109,687,356 - 110,051,327 (-)EnsemblGRCm39 Ensembl
GRCm383109,780,050 - 110,149,972 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3109,780,040 - 110,144,011 (-)EnsemblGRCm38mm10GRCm38
MGSCv373109,582,968 - 109,946,390 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363109,909,161 - 110,271,285 (-)NCBIMGSCv36mm8
Celera3112,112,977 - 112,463,175 (-)NCBICelera
Cytogenetic Map3F3NCBI
cM Map348.47NCBI
Ntng1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82200,151,979 - 200,515,031 (-)NCBIGRCr8
mRatBN7.22197,462,785 - 197,827,681 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2197,463,945 - 197,826,997 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2205,094,756 - 205,461,796 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02202,982,043 - 203,345,907 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02197,799,131 - 198,162,985 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02212,695,464 - 213,073,046 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2212,696,624 - 212,852,870 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02232,164,771 - 232,540,890 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42205,438,061 - 205,806,249 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2190,099,849 - 190,462,194 (-)NCBICelera
Cytogenetic Map2q41NCBI
Ntng1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543510,923,490 - 11,248,995 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543510,923,557 - 11,247,091 (+)NCBIChiLan1.0ChiLan1.0
NTNG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21119,668,900 - 120,014,947 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11118,831,221 - 119,176,141 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01109,666,955 - 110,012,880 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11108,782,831 - 109,131,065 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1108,790,654 - 109,127,016 (+)Ensemblpanpan1.1panPan2
Ntng1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058116,385,588 - 116,732,725 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936731849,542 - 1,184,653 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936731844,718 - 1,184,179 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NTNG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4112,287,043 - 112,614,544 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14112,280,899 - 112,615,782 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24123,051,572 - 123,403,728 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NTNG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12026,110,472 - 26,453,603 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2026,112,017 - 26,275,352 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603831,777,192 - 32,133,461 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ntng1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247723,165,679 - 3,491,832 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247723,164,503 - 3,493,574 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NTNG1
3507 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5
Low 5 1 9 6 1 7 8 7 2
Below cutoff 4 11 4 4 5 4 3 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000031764   ⟹   ENSCAFP00000029575
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl644,092,043 - 44,403,799 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000031765   ⟹   ENSCAFP00000029576
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl644,092,043 - 44,403,799 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000046036   ⟹   ENSCAFP00000037816
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl644,092,043 - 44,403,799 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000082656   ⟹   ENSCAFP00000047910
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl644,092,043 - 44,403,799 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000083850   ⟹   ENSCAFP00000047225
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl644,092,043 - 44,398,009 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000087754   ⟹   ENSCAFP00000050161
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl644,092,043 - 44,403,799 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000091167   ⟹   ENSCAFP00000062084
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl644,092,043 - 44,403,799 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845017765   ⟹   ENSCAFP00845013839
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl644,369,892 - 44,689,279 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845017836   ⟹   ENSCAFP00845014000
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl644,369,892 - 44,689,279 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845018047   ⟹   ENSCAFP00845014057
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl644,369,892 - 44,689,279 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845018089   ⟹   ENSCAFP00845014093
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl644,369,892 - 44,689,279 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845018122   ⟹   ENSCAFP00845014124
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl644,369,892 - 44,683,345 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845018163   ⟹   ENSCAFP00845014157
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl644,369,892 - 44,683,345 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845018205   ⟹   ENSCAFP00845014195
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl644,369,892 - 44,683,345 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845018257   ⟹   ENSCAFP00845014244
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl644,371,201 - 44,689,279 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845018300   ⟹   ENSCAFP00845014280
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl644,371,201 - 44,689,279 (-)Ensembl
RefSeq Acc Id: XM_038480376   ⟹   XP_038336304
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1644,103,380 - 44,424,632 (-)NCBI
RefSeq Acc Id: XM_038535450   ⟹   XP_038391378
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha646,876,321 - 47,191,139 (-)NCBI
RefSeq Acc Id: XM_038538947   ⟹   XP_038394875
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0644,504,683 - 44,821,791 (-)NCBI
RefSeq Acc Id: XM_038602964   ⟹   XP_038458892
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0644,072,563 - 44,386,000 (-)NCBI
RefSeq Acc Id: XM_038667662   ⟹   XP_038523590
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0644,370,414 - 44,691,951 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000050161   ⟸   ENSCAFT00000087754
RefSeq Acc Id: ENSCAFP00000047225   ⟸   ENSCAFT00000083850
RefSeq Acc Id: ENSCAFP00000047910   ⟸   ENSCAFT00000082656
RefSeq Acc Id: ENSCAFP00000029576   ⟸   ENSCAFT00000031765
RefSeq Acc Id: ENSCAFP00000029575   ⟸   ENSCAFT00000031764
RefSeq Acc Id: ENSCAFP00000037816   ⟸   ENSCAFT00000046036
RefSeq Acc Id: ENSCAFP00000062084   ⟸   ENSCAFT00000091167
RefSeq Acc Id: XP_038336304   ⟸   XM_038480376
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038458892   ⟸   XM_038602964
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038523590   ⟸   XM_038667662
- Peptide Label: isoform X1
- UniProtKB: A0A8C0Q2H2 (UniProtKB/TrEMBL),   A0A8I3N9M4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391378   ⟸   XM_038535450
- Peptide Label: isoform X1
- UniProtKB: A0A8C0Q2H2 (UniProtKB/TrEMBL),   A0A8I3N9M4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038394875   ⟸   XM_038538947
- Peptide Label: isoform X1
- UniProtKB: A0A8C0Q2H2 (UniProtKB/TrEMBL),   A0A8I3N9M4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845014280   ⟸   ENSCAFT00845018300
RefSeq Acc Id: ENSCAFP00845014124   ⟸   ENSCAFT00845018122
RefSeq Acc Id: ENSCAFP00845014157   ⟸   ENSCAFT00845018163
RefSeq Acc Id: ENSCAFP00845014057   ⟸   ENSCAFT00845018047
RefSeq Acc Id: ENSCAFP00845013839   ⟸   ENSCAFT00845017765
RefSeq Acc Id: ENSCAFP00845014195   ⟸   ENSCAFT00845018205
RefSeq Acc Id: ENSCAFP00845014093   ⟸   ENSCAFT00845018089
RefSeq Acc Id: ENSCAFP00845014000   ⟸   ENSCAFT00845017836
RefSeq Acc Id: ENSCAFP00845014244   ⟸   ENSCAFT00845018257
Protein Domains
EGF-like   Laminin EGF-like   Laminin N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019958 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030007136 UniProtKB/TrEMBL
  ENSCAFG00040000594 UniProtKB/TrEMBL
  ENSCAFG00845010067 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000031764.5 UniProtKB/TrEMBL
  ENSCAFT00000031765.6 UniProtKB/TrEMBL
  ENSCAFT00000046036.4 UniProtKB/TrEMBL
  ENSCAFT00000082656.2 UniProtKB/TrEMBL
  ENSCAFT00000087754.2 UniProtKB/TrEMBL
  ENSCAFT00000091167.2 UniProtKB/TrEMBL
  ENSCAFT00030013108.1 UniProtKB/TrEMBL
  ENSCAFT00030013179.1 UniProtKB/TrEMBL
  ENSCAFT00030013369.1 UniProtKB/TrEMBL
  ENSCAFT00030013674.1 UniProtKB/TrEMBL
  ENSCAFT00030013701.1 UniProtKB/TrEMBL
  ENSCAFT00030013761.1 UniProtKB/TrEMBL
  ENSCAFT00040001070.1 UniProtKB/TrEMBL
  ENSCAFT00040001095.1 UniProtKB/TrEMBL
  ENSCAFT00040001165.1 UniProtKB/TrEMBL
  ENSCAFT00040001188.1 UniProtKB/TrEMBL
  ENSCAFT00040001210.1 UniProtKB/TrEMBL
  ENSCAFT00040001219.1 UniProtKB/TrEMBL
  ENSCAFT00845017765 ENTREZGENE
  ENSCAFT00845017765.1 UniProtKB/TrEMBL
  ENSCAFT00845017836.1 UniProtKB/TrEMBL
  ENSCAFT00845018047.1 UniProtKB/TrEMBL
  ENSCAFT00845018089.1 UniProtKB/TrEMBL
  ENSCAFT00845018122.1 UniProtKB/TrEMBL
  ENSCAFT00845018163.1 UniProtKB/TrEMBL
  ENSCAFT00845018205.1 UniProtKB/TrEMBL
  ENSCAFT00845018257.1 UniProtKB/TrEMBL
  ENSCAFT00845018300.1 UniProtKB/TrEMBL
Gene3D-CATH Galactose-binding domain-like UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
  LE_dom UniProtKB/TrEMBL
NCBI Gene NTNG1 ENTREZGENE
PANTHER NETRIN-G1 UniProtKB/TrEMBL
  NETRIN-G2 UniProtKB/TrEMBL
  NETRIN/LAMININ-RELATED UniProtKB/TrEMBL
Pfam Laminin_EGF UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
PROSITE EGF_1 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
  LAMININ_NTER UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
  LamNT UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
UniProt A0A8C0MLW5_CANLF UniProtKB/TrEMBL
  A0A8C0PLV9_CANLF UniProtKB/TrEMBL
  A0A8C0PYG4_CANLF UniProtKB/TrEMBL
  A0A8C0Q2H2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0REI5_CANLF UniProtKB/TrEMBL
  A0A8C0RUP7_CANLF UniProtKB/TrEMBL
  A0A8I3N5G4_CANLF UniProtKB/TrEMBL
  A0A8I3N9M4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N9P7_CANLF UniProtKB/TrEMBL
  A0A8I3NA08_CANLF UniProtKB/TrEMBL
  A0A8I3NET4_CANLF UniProtKB/TrEMBL
  A0A8I3NEY5_CANLF UniProtKB/TrEMBL
  A0A8I3NFF2_CANLF UniProtKB/TrEMBL
  A0A8I3NFH4_CANLF UniProtKB/TrEMBL
  A0A8I3NGQ4_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:58321 ENTREZGENE