LOC100688200 (ferritin heavy chain-like) - Rat Genome Database

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Gene: LOC100688200 (ferritin heavy chain-like) Canis lupus familiaris
Analyze
Symbol: LOC100688200
Name: ferritin heavy chain-like
RGD ID: 12291689
Description: ENCODES a protein that exhibits ferric iron binding (inferred); metal ion binding (inferred); INVOLVED IN intracellular iron ion homeostasis (inferred); iron ion transport (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ferritin heavy chain pseudogene
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.131220,118 - 222,732 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha31263,249 - 265,904 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.031203,585 - 206,240 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.131183,277 - 185,932 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.031230,601 - 233,275 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.031535,259 - 537,909 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC100688200
31 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_038443758   ⟹   XP_038299686
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.031203,585 - 206,240 (+)NCBI
RefSeq Acc Id: XM_038461871   ⟹   XP_038317799
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha31263,249 - 265,904 (+)NCBI
RefSeq Acc Id: XM_038518221   ⟹   XP_038374149
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.131183,277 - 185,932 (+)NCBI
RefSeq Acc Id: XM_038581722   ⟹   XP_038437650
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.031535,259 - 537,909 (+)NCBI
RefSeq Acc Id: XM_038646128   ⟹   XP_038502056
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.031230,601 - 233,275 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038299686 (Get FASTA)   NCBI Sequence Viewer  
  XP_038317799 (Get FASTA)   NCBI Sequence Viewer  
  XP_038374149 (Get FASTA)   NCBI Sequence Viewer  
  XP_038437650 (Get FASTA)   NCBI Sequence Viewer  
  XP_038502056 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000047994.2
Reference Protein Sequences
RefSeq Acc Id: XP_038374149   ⟸   XM_038518221
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038502056   ⟸   XM_038646128
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038299686   ⟸   XM_038443758
- Peptide Label: isoform X1
- UniProtKB: A0A8P0T0W7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038317799   ⟸   XM_038461871
- Peptide Label: isoform X4
- UniProtKB: A0A8P0T0W7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038437650   ⟸   XM_038581722
- Peptide Label: isoform X3
- UniProtKB: A0A8P0T0W7 (UniProtKB/TrEMBL)
Protein Domains
Ferritin-like diiron


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000001606 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000002522.5 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1260.10 UniProtKB/TrEMBL
InterPro Ferritin UniProtKB/TrEMBL
  Ferritin-like UniProtKB/TrEMBL
  Ferritin-like_diiron UniProtKB/TrEMBL
  Ferritin-like_SF UniProtKB/TrEMBL
  Ferritin_CS UniProtKB/TrEMBL
  Ferritin_DPS_dom UniProtKB/TrEMBL
NCBI Gene LOC100688200 ENTREZGENE
PANTHER FERRITIN UniProtKB/TrEMBL
  FERRITIN HEAVY CHAIN UniProtKB/TrEMBL
Pfam Ferritin UniProtKB/TrEMBL
PROSITE FERRITIN_1 UniProtKB/TrEMBL
  FERRITIN_2 UniProtKB/TrEMBL
  FERRITIN_LIKE UniProtKB/TrEMBL
Superfamily-SCOP Ferritin-like UniProtKB/TrEMBL
UniProt A0A8P0T0W7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-12 LOC100688200  ferritin heavy chain-like  LOC100688200  ferritin heavy chain pseudogene  Symbol and/or name change 5135510 APPROVED