CLTA (clathrin light chain A) - Rat Genome Database

Name: CLTA
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: CLTA (clathrin light chain A) Canis lupus familiaris

Analyze

Symbol:

CLTA

Name:

clathrin light chain A

RGD ID:

12289403

Description:

ENCODES a protein that exhibits GTPase binding (ortholog); peptide binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN endocytosis (ortholog); synaptic vesicle endocytosis (ortholog); PARTICIPATES IN Arf family mediated signaling pathway; clathrin-dependent synaptic vesicle endocytosis; ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); autosomal recessive distal hereditary motor neuronopathy 2 (ortholog); FOUND IN clathrin coat (ortholog); clathrin-coated pit (ortholog); clathrin-coated vesicle (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

clathrin, light chain (Lca)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CLTA (clathrin light chain A)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Clta (clathrin light chain A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Clta (clathrin, light chain A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Clta (clathrin light chain A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CLTA (clathrin light chain A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Clta (clathrin light chain A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CLTA (clathrin light chain A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CLTA (clathrin light chain A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Clta (clathrin light chain A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	GLIPR2 (GLI pathogenesis related 2)	HGNC	EggNOG, OrthoDB

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	52,636,328 - 52,681,258 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	52,615,039 - 52,681,270 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	51,227,019 - 51,271,906 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	53,742,643 - 53,787,381 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	53,765,885 - 53,789,703 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	52,245,564 - 52,290,214 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	52,267,619 - 52,312,459 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	52,969,170 - 53,014,020 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acromesomelic dysplasia, Maroteaux type (ISO)

anauxetic dysplasia (ISO)

autosomal recessive distal hereditary motor neuronopathy 2 (ISO)

COVID-19 (ISO)

distal arthrogryposis type 1A (ISO)

frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (ISO)

galactosemia (ISO)

hyperphosphatasia with impaired intellectual development syndrome 2 (ISO)

primary ciliary dyskinesia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

clathrin coat assembly (IEA)

clathrin-dependent endocytosis (IEA)

endocytosis (ISO)

intracellular protein transport (IEA)

synaptic vesicle endocytosis (ISO)

vesicle-mediated transport (IEA)

Cellular Component

clathrin coat (IEA,ISO)

clathrin coat of coated pit (IEA)

clathrin coat of trans-Golgi network vesicle (IEA)

clathrin complex (IEA)

clathrin vesicle coat (IEA)

clathrin-coated pit (IEA,ISO)

clathrin-coated vesicle (ISO)

cytoplasmic vesicle (IEA)

cytoplasmic vesicle membrane (IEA)

extracellular region (IEA)

extracellular space (IEA)

glutamatergic synapse (ISO)

plasma membrane (IEA)

postsynaptic endocytic zone (ISO)

postsynaptic endocytic zone cytoplasmic component (IEA)

presynaptic endocytic zone membrane (ISO)

synaptic vesicle membrane (IEA,ISO)

Molecular Function

clathrin heavy chain binding (IEA)

GTPase binding (ISO)

peptide binding (ISO)

protein binding (ISO)

protein-containing complex binding (ISO)

structural molecule activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

Arf family mediated signaling pathway (ISO)

clathrin-dependent synaptic vesicle endocytosis (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CLTA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	52,636,328 - 52,681,258 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	52,615,039 - 52,681,270 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	51,227,019 - 51,271,906 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	53,742,643 - 53,787,381 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	53,765,885 - 53,789,703 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	52,245,564 - 52,290,214 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	52,267,619 - 52,312,459 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	52,969,170 - 53,014,020 (+)	NCBI		UU_Cfam_GSD_1.0

CLTA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	36,190,874 - 36,212,059 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	36,190,856 - 36,304,781 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	36,190,918 - 36,212,056 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	36,180,892 - 36,202,056 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	36,180,988 - 36,202,055	NCBI
Celera	9	36,124,438 - 36,145,644 (+)	NCBI		Celera
Cytogenetic Map	9	p13.3	NCBI
HuRef	9	36,144,777 - 36,166,054 (+)	NCBI		HuRef
CHM1_1	9	36,191,259 - 36,212,465 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	36,212,880 - 36,234,065 (+)	NCBI		T2T-CHM13v2.0

Clta
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	44,003,816 - 44,032,846 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	44,004,452 - 44,032,846 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	44,003,816 - 44,032,846 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	44,004,452 - 44,032,846 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	44,025,515 - 44,045,718 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	44,033,784 - 44,053,946 (+)	NCBI		MGSCv36	mm8
Celera	4	44,033,842 - 44,054,042 (+)	NCBI		Celera
Cytogenetic Map	4	B1	NCBI
cM Map	4	23.09	NCBI

Clta
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	63,022,046 - 63,059,223 (+)	NCBI		GRCr8
mRatBN7.2	5	58,244,253 - 58,263,480 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	58,245,442 - 58,263,472 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	60,227,391 - 60,245,248 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	62,046,199 - 62,064,056 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	62,015,336 - 62,033,490 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	59,490,689 - 59,509,139 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	59,491,096 - 59,509,138 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	64,012,881 - 64,031,657 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	60,484,437 - 60,502,432 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	60,484,615 - 60,502,611 (+)	NCBI
Celera	5	56,823,904 - 56,841,911 (+)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

Clta
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955472	97,235 - 117,144 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955472	96,958 - 117,230 (-)	NCBI	ChiLan1.0	ChiLan1.0

CLTA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	88,377,550 - 88,398,727 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	88,383,487 - 88,404,664 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	36,040,566 - 36,061,744 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	36,841,477 - 36,862,528 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	36,840,868 - 36,862,528 (+)	Ensembl	panpan1.1		panPan2

Clta
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	167,622,904 - 167,644,372 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	4,169,732 - 4,191,951 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936524	4,170,425 - 4,191,951 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CLTA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	236,971,505 - 237,001,731 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	236,971,317 - 236,993,291 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	264,772,770 - 264,783,359 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CLTA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	44,346,169 - 44,367,626 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	44,344,395 - 44,367,619 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	41,437,200 - 41,458,568 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Clta
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624868	4,419,554 - 4,443,477 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624868	4,419,554 - 4,443,475 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CLTA
414 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003639392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003639393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003639394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003639395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022425599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038490679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038490680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038490681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038490682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038490683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038552807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038552808	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038552809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038552810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038552811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038616668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038616669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038616670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038616671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038616672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038682134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038682135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038682136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038682137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038682138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000003597 ⟹ ENSCAFP00000003331

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	11	52,659,777 - 52,680,985 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000003598 ⟹ ENSCAFP00000003332

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	11	52,659,777 - 52,680,985 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000049610 ⟹ ENSCAFP00000037858

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	11	52,624,232 - 52,633,368 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000075961 ⟹ ENSCAFP00000061216

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	11	52,615,039 - 52,681,268 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000088192 ⟹ ENSCAFP00000055159

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	11	52,659,777 - 52,681,219 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000090976 ⟹ ENSCAFP00000062091

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	11	52,623,836 - 52,681,268 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000093757 ⟹ ENSCAFP00000052560

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	11	52,659,891 - 52,681,270 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845019846 ⟹ ENSCAFP00845015540

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	11	53,765,885 - 53,789,703 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845019881 ⟹ ENSCAFP00845015572

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	11	53,765,898 - 53,787,397 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845019912 ⟹ ENSCAFP00845015597

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	11	53,765,915 - 53,787,955 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845019964 ⟹ ENSCAFP00845015639

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	11	53,765,915 - 53,787,955 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845020028 ⟹ ENSCAFP00845015693

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	11	53,766,008 - 53,789,703 (+)	Ensembl

RefSeq Acc Id:

XM_003639392 ⟹ XP_003639440

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	11	52,659,754 - 52,681,258 (+)	NCBI
Dog10K_Boxer_Tasha	11	51,250,403 - 51,271,906 (+)	NCBI

Sequence:

show sequence

GTTTCCGCTTCCGCCTTCTCCCTCCCGCTTGTCGTCGGATCGCGGTCGCCGCCACAGCTGCCGC
TGCGGGGCGCGGTGTTGGTGGGTCGGTTGGCTTGTCTCTCAACGCCGGTGTCCGTGCCGTTGAA
CTGCCCGCCATGGCTGAACTAGATCCGTTCGGCGCTCCCGCCAGCGCTCCTGGCGGCCCCGCGC
TGGGGAACGGGGTGGCCGGTGCCGGCGAAGAAGACCCGGCCGCGGCCTTCTTGGCGCAGCAGGA
GAGCGAGATTGCGGGCATCGAGAACGACGAGGCCTTCGCCATCCTGGACGGCGGTGCCCCCGGA
CCCCAGCCGCACGGCGAGCCGCCGGGGGTTCCGGATGCTGTGGATGGAGTGATGAATGGCGAGT
ACTACCAGGAGAGTAATGGTCCAACAGACAGTTACGCAGCTATTTCACAAGTGGATCGATTGCA
GTCAGAGCCTGAAAGTATCCGTAAATGGAGAGAAGAGCAAACGGAACGCTTGGAAGCCCTTGAT
GCCAATTCTCGGAAGCAAGAAGCAGAGTGGAAAGAAAAAGCCATAAAGGAGCTAGAAGAATGGT
ATGCGAGGCAGGACGAGCAGCTACAGAAAACAAAAGCAAACAACAGGGCAGCAGAAGAAGCCTT
TGTAAACGACATAGACGAGTCGTCCCCAGGCACTGAGTGGGAACGGGTGGCCCGGCTGTGTGAC
TTTAACCCCAAGTCCAGCAAGCAGGCCAAAGATGTCTCCCGCATGCGCTCTGTCCTCATCTCCC
TCAAGCAGGCCCCCTTGGTGCACTGAAGAGCCATCCTGTGGAAACACTACATCTGCAATATCTT
AATCCTACTCAGTGAAGCTCTTCACAGTAATTGGATTAATTATGTTGAGTTCTTTTGGACCAAA
CCTTTTGTCTTTAGAGTTGATCATTGTTTGTGATTGCATGTTTCCTTCAGCTGTGTTCTCCCTG
GCAGGCAGAGAGGAGGGGGAGGAAAAGAGGGGGGAAGCCTCCCAAAGGTAGCCTCAACCTCTAC
TTTTGTGCATTATTCTCAGAATAAATTTGTTTCAAACAATAAA

hide sequence

RefSeq Acc Id:

XM_003639393 ⟹ XP_003639441

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	11	52,659,753 - 52,681,258 (+)	NCBI
Dog10K_Boxer_Tasha	11	51,250,401 - 51,271,906 (+)	NCBI

Sequence:

show sequence

GGTTTCCGCTTCCGCCTTCTCCCTCCCGCTTGTCGTCGGATCGCGGTCGCCGCCACAGCTGCCG
CTGCGGGGCGCGGTGTTGGTGGGTCGGTTGGCTTGTCTCTCAACGCCGGTGTCCGTGCCGTTGA
ACTGCCCGCCATGGCTGAACTAGATCCGTTCGGCGCTCCCGCCAGCGCTCCTGGCGGCCCCGCG
CTGGGGAACGGGGTGGCCGGTGCCGGCGAAGAAGACCCGGCCGCGGCCTTCTTGGCGCAGCAGG
AGAGCGAGATTGCGGGCATCGAGAACGACGAGGCCTTCGCCATCCTGGACGGCGGTGCCCCCGG
ACCCCAGCCGCACGGCGAGCCGCCGGGGGTTCCGGATGCTGTGGATGGAGTGATGAATGGCGAG
TACTACCAGGAGAGTAATGGTCCAACAGACAGTTACGCAGCTATTTCACAAGTGGATCGATTGC
AGTCAGAGCCTGAAAGTATCCGTAAATGGAGAGAAGAGCAAACGGAACGCTTGGAAGCCCTTGA
TGCCAATTCTCGGAAGCAAGAAGCAGAGTGGAAAGAAAAAGCCATAAAGGAGCTAGAAGAATGG
TATGCGAGGCAGGACGAGCAGCTACAGAAAACAAAAGCAAACAACAGGGTGGCAGATGAAGCTT
TCTACAAACAACCCTTCGCTGACGTGATTGGTTATGTGGCAGCAGAAGAAGCCTTTGTAAACGA
CATAGACGAGTCGTCCCCAGGCACTGAGTGGGAACGGGTGGCCCGGCTGTGTGACTTTAACCCC
AAGTCCAGCAAGCAGGCCAAAGATGTCTCCCGCATGCGCTCTGTCCTCATCTCCCTCAAGCAGG
CCCCCTTGGTGCACTGAAGAGCCATCCTGTGGAAACACTACATCTGCAATATCTTAATCCTACT
CAGTGAAGCTCTTCACAGTAATTGGATTAATTATGTTGAGTTCTTTTGGACCAAACCTTTTGTC
TTTAGAGTTGATCATTGTTTGTGATTGCATGTTTCCTTCAGCTGTGTTCTCCCTGGCAGGCAGA
GAGGAGGGGGAGGAAAAGAGGGGGGAAGCCTCCCAAAGGTAGCCTCAACCTCTACTTTTGTGCA
TTATTCTCAGAATAAATTTGTTTCAAACAATAAA

hide sequence

RefSeq Acc Id:

XM_003639394 ⟹ XP_003639442

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	11	52,659,753 - 52,681,258 (+)	NCBI
Dog10K_Boxer_Tasha	11	51,250,400 - 51,271,906 (+)	NCBI

Sequence:

show sequence

GGTTTCCGCTTCCGCCTTCTCCCTCCCGCTTGTCGTCGGATCGCGGTCGCCGCCACAGCTGCCG
CTGCGGGGCGCGGTGTTGGTGGGTCGGTTGGCTTGTCTCTCAACGCCGGTGTCCGTGCCGTTGA
ACTGCCCGCCATGGCTGAACTAGATCCGTTCGGCGCTCCCGCCAGCGCTCCTGGCGGCCCCGCG
CTGGGGAACGGGGTGGCCGGTGCCGGCGAAGAAGACCCGGCCGCGGCCTTCTTGGCGCAGCAGG
AGAGCGAGATTGCGGGCATCGAGAACGACGAGGCCTTCGCCATCCTGGACGGCGGTGCCCCCGG
ACCCCAGCCGCACGGCGAGCCGCCGGGGGTTCCGGATGCTGTGGATGGAGTGATGAATGGCGAG
TACTACCAGGAGAGTAATGGTCCAACAGACAGTTACGCAGCTATTTCACAAGTGGATCGATTGC
AGTCAGAGCCTGAAAGTATCCGTAAATGGAGAGAAGAGCAAACGGAACGCTTGGAAGCCCTTGA
TGCCAATTCTCGGAAGCAAGAAGCAGAGTGGAAAGAAAAAGCCATAAAGGAGCTAGAAGAATGG
TATGCGAGGCAGGACGAGCAGCTACAGAAAACAAAAGCAAACAACAGGGTGGCAGATGAAGCTT
TCTACAAACAACCCTTCGCTGACGTGATTGGTTATGTCACAAACATAAACCATCCTTGCTACAG
CCTAGAACAGGCAGCAGAAGAAGCCTTTGTAAACGACATAGACGAGTCGTCCCCAGGCACTGAG
TGGGAACGGGTGGCCCGGCTGTGTGACTTTAACCCCAAGTCCAGCAAGCAGGCCAAAGATGTCT
CCCGCATGCGCTCTGTCCTCATCTCCCTCAAGCAGGCCCCCTTGGTGCACTGAAGAGCCATCCT
GTGGAAACACTACATCTGCAATATCTTAATCCTACTCAGTGAAGCTCTTCACAGTAATTGGATT
AATTATGTTGAGTTCTTTTGGACCAAACCTTTTGTCTTTAGAGTTGATCATTGTTTGTGATTGC
ATGTTTCCTTCAGCTGTGTTCTCCCTGGCAGGCAGAGAGGAGGGGGAGGAAAAGAGGGGGGAAG
CCTCCCAAAGGTAGCCTCAACCTCTACTTTTGTGCATTATTCTCAGAATAAATTTGTTTCAAAC
AATAAA

hide sequence

RefSeq Acc Id:

XM_003639395 ⟹ XP_003639443

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	11	52,659,753 - 52,681,258 (+)	NCBI
Dog10K_Boxer_Tasha	11	51,250,401 - 51,271,906 (+)	NCBI

Sequence:

show sequence

GGTTTCCGCTTCCGCCTTCTCCCTCCCGCTTGTCGTCGGATCGCGGTCGCCGCCACAGCTGCCG
CTGCGGGGCGCGGTGTTGGTGGGTCGGTTGGCTTGTCTCTCAACGCCGGTGTCCGTGCCGTTGA
ACTGCCCGCCATGGCTGAACTAGATCCGTTCGGCGCTCCCGCCAGCGCTCCTGGCGGCCCCGCG
CTGGGGAACGGGGTGGCCGGTGCCGGCGAAGAAGACCCGGCCGCGGCCTTCTTGGCGCAGCAGG
AGAGCGAGATTGCGGGCATCGAGAACGACGAGGCCTTCGCCATCCTGGACGGCGGTGCCCCCGG
ACCCCAGCCGCACGGCGAGCCGCCGGGGGTTCCGGATGCTGTGGATGGAGTGATGAATGGCGAG
TACTACCAGGAGAGTAATGGTCCAACAGACAGTTACGCAGCTATTTCACAAGTGGATCGATTGC
AGTCAGAGCCTGAAAGTATCCGTAAATGGAGAGAAGAGCAAACGGAACGCTTGGAAGCCCTTGA
TGCCAATTCTCGGAAGCAAGAAGCAGAGTGGAAAGAAAAAGCCATAAAGGAGCTAGAAGAATGG
TATGCGAGGCAGGACGAGCAGCTACAGAAAACAAAAGCAAACAACAGCACAAACATAAACCATC
CTTGCTACAGCCTAGAACAGGCAGCAGAAGAAGCCTTTGTAAACGACATAGACGAGTCGTCCCC
AGGCACTGAGTGGGAACGGGTGGCCCGGCTGTGTGACTTTAACCCCAAGTCCAGCAAGCAGGCC
AAAGATGTCTCCCGCATGCGCTCTGTCCTCATCTCCCTCAAGCAGGCCCCCTTGGTGCACTGAA
GAGCCATCCTGTGGAAACACTACATCTGCAATATCTTAATCCTACTCAGTGAAGCTCTTCACAG
TAATTGGATTAATTATGTTGAGTTCTTTTGGACCAAACCTTTTGTCTTTAGAGTTGATCATTGT
TTGTGATTGCATGTTTCCTTCAGCTGTGTTCTCCCTGGCAGGCAGAGAGGAGGGGGAGGAAAAG
AGGGGGGAAGCCTCCCAAAGGTAGCCTCAACCTCTACTTTTGTGCATTATTCTCAGAATAAATT
TGTTTCAAACAATAAA

hide sequence

RefSeq Acc Id:

XM_022425599 ⟹ XP_022281307

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	11	52,636,328 - 52,681,258 (+)	NCBI
Dog10K_Boxer_Tasha	11	51,227,019 - 51,271,906 (+)	NCBI

Sequence:

show sequence

TTAACAAGCCTCCTTTTCATGGGGAAAACAAGTTTTCAGCCTTGTGCAGAGAGATGTCAAGACA
CTGAGTGCCTCGGTACCGTTCAGGTGTCAAGGGGAACAGCCTCAGCAGCCAAACATGCTGTGGA
TGGAGTGATGAATGGCGAGTACTACCAGGAGAGTAATGGTCCAACAGACAGTTACGCAGCTATT
TCACAAGTGGATCGATTGCAGTCAGAGCCTGAAAGTATCCGTAAATGGAGAGAAGAGCAAACGG
AACGCTTGGAAGCCCTTGATGCCAATTCTCGGAAGCAAGAAGCAGAGTGGAAAGAAAAAGCCAT
AAAGGAGCTAGAAGAATGGTATGCGAGGCAGGACGAGCAGCTACAGAAAACAAAAGCAAACAAC
AGGGTGGCAGATGAAGCTTTCTACAAACAACCCTTCGCTGACGTGATTGGTTATGTCACAAACA
TAAACCATCCTTGCTACAGCCTAGAACAGGCAGCAGAAGAAGCCTTTGTAAACGACATAGACGA
GTCGTCCCCAGGCACTGAGTGGGAACGGGTGGCCCGGCTGTGTGACTTTAACCCCAAGTCCAGC
AAGCAGGCCAAAGATGTCTCCCGCATGCGCTCTGTCCTCATCTCCCTCAAGCAGGCCCCCTTGG
TGCACTGAAGAGCCATCCTGTGGAAACACTACATCTGCAATATCTTAATCCTACTCAGTGAAGC
TCTTCACAGTAATTGGATTAATTATGTTGAGTTCTTTTGGACCAAACCTTTTGTCTTTAGAGTT
GATCATTGTTTGTGATTGCATGTTTCCTTCAGCTGTGTTCTCCCTGGCAGGCAGAGAGGAGGGG
GAGGAAAAGAGGGGGGAAGCCTCCCAAAGGTAGCCTCAACCTCTACTTTTGTGCATTATTCTCA
GAATAAATTTGTTTCAAACAATAAA

hide sequence

RefSeq Acc Id:

XM_038490679 ⟹ XP_038346607

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	11	52,268,716 - 52,290,214 (+)	NCBI

RefSeq Acc Id:

XM_038490680 ⟹ XP_038346608

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	11	52,268,717 - 52,290,214 (+)	NCBI

RefSeq Acc Id:

XM_038490681 ⟹ XP_038346609

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	11	52,268,717 - 52,290,214 (+)	NCBI

RefSeq Acc Id:

XM_038490682 ⟹ XP_038346610

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	11	52,268,719 - 52,290,214 (+)	NCBI

RefSeq Acc Id:

XM_038490683 ⟹ XP_038346611

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	11	52,245,564 - 52,290,214 (+)	NCBI

RefSeq Acc Id:

XM_038552807 ⟹ XP_038408735

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	11	52,992,513 - 53,014,020 (+)	NCBI

RefSeq Acc Id:

XM_038552808 ⟹ XP_038408736

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	11	52,992,514 - 53,014,020 (+)	NCBI

RefSeq Acc Id:

XM_038552809 ⟹ XP_038408737

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	11	52,992,514 - 53,014,020 (+)	NCBI

RefSeq Acc Id:

XM_038552810 ⟹ XP_038408738

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	11	52,992,516 - 53,014,020 (+)	NCBI

RefSeq Acc Id:

XM_038552811 ⟹ XP_038408739

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	11	52,969,170 - 53,014,020 (+)	NCBI

RefSeq Acc Id:

XM_038616668 ⟹ XP_038472596

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	11	52,290,955 - 52,312,459 (+)	NCBI

RefSeq Acc Id:

XM_038616669 ⟹ XP_038472597

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	11	52,290,956 - 52,312,459 (+)	NCBI

RefSeq Acc Id:

XM_038616670 ⟹ XP_038472598

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	11	52,290,956 - 52,312,459 (+)	NCBI

RefSeq Acc Id:

XM_038616671 ⟹ XP_038472599

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	11	52,290,958 - 52,312,459 (+)	NCBI

RefSeq Acc Id:

XM_038616672 ⟹ XP_038472600

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	11	52,267,619 - 52,312,459 (+)	NCBI

RefSeq Acc Id:

XM_038682134 ⟹ XP_038538062

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	11	53,765,868 - 53,787,381 (+)	NCBI

RefSeq Acc Id:

XM_038682135 ⟹ XP_038538063

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	11	53,765,869 - 53,787,381 (+)	NCBI

RefSeq Acc Id:

XM_038682136 ⟹ XP_038538064

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	11	53,765,869 - 53,787,381 (+)	NCBI

RefSeq Acc Id:

XM_038682137 ⟹ XP_038538065

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	11	53,765,871 - 53,787,381 (+)	NCBI

RefSeq Acc Id:

XM_038682138 ⟹ XP_038538066

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	11	53,742,643 - 53,787,381 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003639440	(Get FASTA)	NCBI Sequence Viewer
	XP_003639441	(Get FASTA)	NCBI Sequence Viewer
	XP_003639442	(Get FASTA)	NCBI Sequence Viewer
	XP_003639443	(Get FASTA)	NCBI Sequence Viewer
	XP_022281307	(Get FASTA)	NCBI Sequence Viewer
	XP_038346607	(Get FASTA)	NCBI Sequence Viewer
	XP_038346608	(Get FASTA)	NCBI Sequence Viewer
	XP_038346609	(Get FASTA)	NCBI Sequence Viewer
	XP_038346610	(Get FASTA)	NCBI Sequence Viewer
	XP_038346611	(Get FASTA)	NCBI Sequence Viewer
	XP_038408735	(Get FASTA)	NCBI Sequence Viewer
	XP_038408736	(Get FASTA)	NCBI Sequence Viewer
	XP_038408737	(Get FASTA)	NCBI Sequence Viewer
	XP_038408738	(Get FASTA)	NCBI Sequence Viewer
	XP_038408739	(Get FASTA)	NCBI Sequence Viewer
	XP_038472596	(Get FASTA)	NCBI Sequence Viewer
	XP_038472597	(Get FASTA)	NCBI Sequence Viewer
	XP_038472598	(Get FASTA)	NCBI Sequence Viewer
	XP_038472599	(Get FASTA)	NCBI Sequence Viewer
	XP_038472600	(Get FASTA)	NCBI Sequence Viewer
	XP_038538062	(Get FASTA)	NCBI Sequence Viewer
	XP_038538063	(Get FASTA)	NCBI Sequence Viewer
	XP_038538064	(Get FASTA)	NCBI Sequence Viewer
	XP_038538065	(Get FASTA)	NCBI Sequence Viewer
	XP_038538066	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000003332.5
	ENSCAFP00000052560.2
	ENSCAFP00000055159.1
	ENSCAFP00000062091.2
	ENSCAFP00000069180.1
	ENSCAFP00030011949.1
	ENSCAFP00030012072.1
	ENSCAFP00030012149.1
	ENSCAFP00030012238.1
	ENSCAFP00030012273.1
	ENSCAFP00040022149.1
	ENSCAFP00040022197.1
	ENSCAFP00040022456.1
	ENSCAFP00040022519.1
	ENSCAFP00040022568.1
	ENSCAFP00040022616.1
	ENSCAFP00845015540
	ENSCAFP00845015540.1
	ENSCAFP00845015572
	ENSCAFP00845015572.1
	ENSCAFP00845015597
	ENSCAFP00845015597.1
	ENSCAFP00845015639
	ENSCAFP00845015639.1
	ENSCAFP00845015693.1

RefSeq Acc Id:	XP_003639442 ⟸ XM_003639394
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0SJD8 (UniProtKB/TrEMBL), A0A8I3NHV2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQP HGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANS RKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVTNINHPCYSLEQ AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH hide sequence

RefSeq Acc Id:	XP_003639441 ⟸ XM_003639393
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0YXZ3 (UniProtKB/TrEMBL), A0A8I3NTW3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQP HGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANS RKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVAAEEAFVNDIDE SSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH hide sequence

RefSeq Acc Id:	XP_003639443 ⟸ XM_003639395
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0MIF0 (UniProtKB/TrEMBL), A0A8I3NEF5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQP HGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANS RKQEAEWKEKAIKELEEWYARQDEQLQKTKANNSTNINHPCYSLEQAAEEAFVNDIDESSPGTE WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH hide sequence

RefSeq Acc Id:	XP_003639440 ⟸ XM_003639392
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0KUV2 (UniProtKB/TrEMBL), A0A8I3NIM2 (UniProtKB/TrEMBL), A0A8P0N5D3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQP HGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANS RKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTEWERVARLCDFNP KSSKQAKDVSRMRSVLISLKQAPLVH hide sequence

RefSeq Acc Id:

XP_022281307 ⟸ XM_022425599

- Peptide Label:

isoform X5

- Sequence:

show sequence

MGKTSFQPCAERCQDTECLGTVQVSRGTASAAKHAVDGVMNGEYYQESNGPTDSYAAISQVDRL
QSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEA
FYKQPFADVIGYVTNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDV
SRMRSVLISLKQAPLVH

hide sequence

RefSeq Acc Id:

ENSCAFP00000055159 ⟸ ENSCAFT00000088192

RefSeq Acc Id:

ENSCAFP00000037858 ⟸ ENSCAFT00000049610

RefSeq Acc Id:

ENSCAFP00000052560 ⟸ ENSCAFT00000093757

RefSeq Acc Id:

ENSCAFP00000003332 ⟸ ENSCAFT00000003598

RefSeq Acc Id:

ENSCAFP00000003331 ⟸ ENSCAFT00000003597

RefSeq Acc Id:

ENSCAFP00000062091 ⟸ ENSCAFT00000090976

RefSeq Acc Id:

ENSCAFP00000061216 ⟸ ENSCAFT00000075961

RefSeq Acc Id:	XP_038346611 ⟸ XM_038490683
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038346607 ⟸ XM_038490679
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038346608 ⟸ XM_038490680
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038346609 ⟸ XM_038490681
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038346610 ⟸ XM_038490682
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038472600 ⟸ XM_038616672
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038472596 ⟸ XM_038616668
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038472597 ⟸ XM_038616669
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038472598 ⟸ XM_038616670
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038472599 ⟸ XM_038616671
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038538066 ⟸ XM_038682138
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038538062 ⟸ XM_038682134
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0SJD8 (UniProtKB/TrEMBL), A0A8I3NHV2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038538063 ⟸ XM_038682135
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0YXZ3 (UniProtKB/TrEMBL), A0A8I3NTW3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038538064 ⟸ XM_038682136
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0MIF0 (UniProtKB/TrEMBL), A0A8I3NEF5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038538065 ⟸ XM_038682137
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0KUV2 (UniProtKB/TrEMBL), A0A8I3NIM2 (UniProtKB/TrEMBL), A0A8P0N5D3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038408739 ⟸ XM_038552811
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038408735 ⟸ XM_038552807
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0SJD8 (UniProtKB/TrEMBL), A0A8I3NHV2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038408736 ⟸ XM_038552808
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0YXZ3 (UniProtKB/TrEMBL), A0A8I3NTW3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038408737 ⟸ XM_038552809
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0MIF0 (UniProtKB/TrEMBL), A0A8I3NEF5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038408738 ⟸ XM_038552810
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0KUV2 (UniProtKB/TrEMBL), A0A8I3NIM2 (UniProtKB/TrEMBL), A0A8P0N5D3 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845015639 ⟸ ENSCAFT00845019964

RefSeq Acc Id:

ENSCAFP00845015540 ⟸ ENSCAFT00845019846

RefSeq Acc Id:

ENSCAFP00845015693 ⟸ ENSCAFT00845020028

RefSeq Acc Id:

ENSCAFP00845015572 ⟸ ENSCAFT00845019881

RefSeq Acc Id:

ENSCAFP00845015597 ⟸ ENSCAFT00845019912

Protein Domains

SCP

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000002292	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030007420	UniProtKB/TrEMBL
	ENSCAFG00040013797	UniProtKB/TrEMBL
	ENSCAFG00845011188	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000003598.6	UniProtKB/TrEMBL
	ENSCAFT00000088192.2	UniProtKB/TrEMBL
	ENSCAFT00000090976.2	UniProtKB/TrEMBL
	ENSCAFT00000093757.2	UniProtKB/TrEMBL
	ENSCAFT00000108874.1	UniProtKB/TrEMBL
	ENSCAFT00030013691.1	UniProtKB/TrEMBL
	ENSCAFT00030013833.1	UniProtKB/TrEMBL
	ENSCAFT00030013918.1	UniProtKB/TrEMBL
	ENSCAFT00030014021.1	UniProtKB/TrEMBL
	ENSCAFT00030014065.1	UniProtKB/TrEMBL
	ENSCAFT00040025471.1	UniProtKB/TrEMBL
	ENSCAFT00040025525.1	UniProtKB/TrEMBL
	ENSCAFT00040025823.1	UniProtKB/TrEMBL
	ENSCAFT00040025892.1	UniProtKB/TrEMBL
	ENSCAFT00040025945.1	UniProtKB/TrEMBL
	ENSCAFT00040026006.1	UniProtKB/TrEMBL
	ENSCAFT00845019846	ENTREZGENE
	ENSCAFT00845019846.1	UniProtKB/TrEMBL
	ENSCAFT00845019881	ENTREZGENE
	ENSCAFT00845019881.1	UniProtKB/TrEMBL
	ENSCAFT00845019912	ENTREZGENE
	ENSCAFT00845019912.1	UniProtKB/TrEMBL
	ENSCAFT00845019964	ENTREZGENE
	ENSCAFT00845019964.1	UniProtKB/TrEMBL
	ENSCAFT00845020028.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.33.10	UniProtKB/TrEMBL
InterPro	Allrgn_V5/Tpx1_CS	UniProtKB/TrEMBL
	CAP_domain	UniProtKB/TrEMBL
	CAP_sf	UniProtKB/TrEMBL
	Clathrin_L-chain	UniProtKB/TrEMBL
	CRISP-related	UniProtKB/TrEMBL
	SCP_GAPR1-like	UniProtKB/TrEMBL
KEGG Report	cfa:100856559	UniProtKB/TrEMBL
NCBI Gene	CLTA	ENTREZGENE
PANTHER	CLATHRIN LIGHT CHAIN A	UniProtKB/TrEMBL
	GOLGI-ASSOCIATED PLANT PATHOGENESIS-RELATED PROTEIN 1	UniProtKB/TrEMBL
	PTHR10334	UniProtKB/TrEMBL
	PTHR10639	UniProtKB/TrEMBL
Pfam	CAP	UniProtKB/TrEMBL
	Clathrin_lg_ch	UniProtKB/TrEMBL
PRINTS	V5TPXLIKE	UniProtKB/TrEMBL
PROSITE	CLATHRIN_LIGHT_CHN_1	UniProtKB/TrEMBL
	CLATHRIN_LIGHT_CHN_2	UniProtKB/TrEMBL
	CRISP_1	UniProtKB/TrEMBL
SMART	SCP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF55797	UniProtKB/TrEMBL
UniProt	A0A8C0KUV2	ENTREZGENE
	A0A8C0MHU9_CANLF	UniProtKB/TrEMBL
	A0A8C0MIF0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0RET0_CANLF	UniProtKB/TrEMBL
	A0A8C0SJD8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0SKM9_CANLF	UniProtKB/TrEMBL
	A0A8C0SKS9_CANLF	UniProtKB/TrEMBL
	A0A8C0SMH2_CANLF	UniProtKB/TrEMBL
	A0A8C0YXZ3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NEF5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NHV2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NI30_CANLF	UniProtKB/TrEMBL
	A0A8I3NIM2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NTW3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0N5D3	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:39365	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - PID (archival)