GMPR (guanosine monophosphate reductase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: GMPR (guanosine monophosphate reductase) Canis lupus familiaris
Analyze
Symbol: GMPR
Name: guanosine monophosphate reductase
RGD ID: 12278919
Description: ENCODES a protein that exhibits GMP reductase activity (inferred); metal ion binding (inferred); oxidoreductase activity (inferred); INVOLVED IN nucleotide metabolic process (inferred); purine nucleobase metabolic process (inferred); purine nucleotide metabolic process (inferred); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH juvenile rheumatoid arthritis (ortholog); FOUND IN GMP reductase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: GMP reductase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13515,400,937 - 15,449,157 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3515,401,003 - 15,448,022 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3515,349,846 - 15,399,870 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03515,496,728 - 15,546,793 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3515,496,742 - 15,592,481 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13515,320,905 - 15,370,911 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03515,373,463 - 15,423,499 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03516,699,506 - 16,749,559 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
GMPR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13515,400,937 - 15,449,157 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3515,401,003 - 15,448,022 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3515,349,846 - 15,399,870 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03515,496,728 - 15,546,793 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3515,496,742 - 15,592,481 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13515,320,905 - 15,370,911 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03515,373,463 - 15,423,499 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03516,699,506 - 16,749,559 (+)NCBIUU_Cfam_GSD_1.0
GMPR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38616,238,587 - 16,295,549 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl616,238,587 - 16,295,549 (+)EnsemblGRCh38hg38GRCh38
GRCh37616,238,818 - 16,295,780 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36616,346,790 - 16,403,759 (+)NCBINCBI36Build 36hg18NCBI36
Build 34616,346,789 - 16,403,757NCBI
Celera617,476,654 - 17,533,599 (+)NCBICelera
Cytogenetic Map6p22.3NCBI
HuRef616,186,158 - 16,243,078 (+)NCBIHuRef
CHM1_1616,241,507 - 16,298,432 (+)NCBICHM1_1
T2T-CHM13v2.0616,111,201 - 16,168,104 (+)NCBIT2T-CHM13v2.0
Gmpr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391345,660,905 - 45,699,862 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1345,660,920 - 45,707,276 (+)EnsemblGRCm39 Ensembl
GRCm381345,507,428 - 45,546,386 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1345,507,444 - 45,553,800 (+)EnsemblGRCm38mm10GRCm38
MGSCv371345,602,838 - 45,641,750 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361345,518,441 - 45,557,353 (+)NCBIMGSCv36mm8
Celera1346,580,855 - 46,622,246 (+)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1321.94NCBI
Gmpr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81719,357,992 - 19,395,807 (-)NCBIGRCr8
mRatBN7.21719,151,820 - 19,189,626 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1719,151,815 - 19,189,621 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1719,036,980 - 19,073,481 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01720,640,806 - 20,677,305 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01718,964,099 - 19,000,597 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01719,543,274 - 19,580,929 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1719,543,275 - 19,580,929 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01721,568,731 - 21,606,386 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41725,147,730 - 25,185,385 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11725,150,571 - 25,188,226 (-)NCBI
Celera1718,854,190 - 18,891,279 (-)NCBICelera
Cytogenetic Map17p14NCBI
Gmpr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554839,559,079 - 9,608,953 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554839,559,079 - 9,608,807 (-)NCBIChiLan1.0ChiLan1.0
GMPR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2530,905,788 - 30,962,484 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1626,891,362 - 26,948,043 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0616,094,994 - 16,151,499 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1616,460,654 - 16,515,796 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl616,460,651 - 16,515,796 (+)Ensemblpanpan1.1panPan2
Gmpr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049469,234,796 - 9,272,152 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365522,458,698 - 2,497,191 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365522,458,728 - 2,496,145 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GMPR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl712,254,388 - 12,299,531 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1712,254,393 - 12,298,802 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2712,850,715 - 12,893,449 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GMPR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11755,843,576 - 55,893,334 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1755,840,978 - 55,893,361 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604416,329,567 - 16,378,381 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gmpr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475610,169,365 - 10,213,419 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475610,170,074 - 10,213,258 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GMPR
732 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 6 5
Low 22 6 6 6 6 7 8 10 6
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000015790   ⟹   ENSCAFP00000014617
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3515,401,003 - 15,448,022 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845042999   ⟹   ENSCAFP00845033713
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3515,496,742 - 15,592,481 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845043098   ⟹   ENSCAFP00845033787
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3515,496,751 - 15,546,793 (+)Ensembl
RefSeq Acc Id: XM_038446435   ⟹   XP_038302363
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03515,496,728 - 15,546,793 (+)NCBI
RefSeq Acc Id: XM_038520578   ⟹   XP_038376506
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13515,320,905 - 15,370,911 (+)NCBI
RefSeq Acc Id: XM_038584227   ⟹   XP_038440155
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03516,699,506 - 16,749,559 (+)NCBI
RefSeq Acc Id: XM_038648636   ⟹   XP_038504564
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03515,373,463 - 15,423,499 (+)NCBI
RefSeq Acc Id: XM_545353   ⟹   XP_545353
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13515,400,937 - 15,449,157 (+)NCBI
Dog10K_Boxer_Tasha3515,349,846 - 15,399,870 (+)NCBI
Sequence:
RefSeq Acc Id: XP_545353   ⟸   XM_545353
- UniProtKB: A0A8C0KFM3 (UniProtKB/TrEMBL),   A0A8C0MVF2 (UniProtKB/TrEMBL),   A0A8I3PQD8 (UniProtKB/TrEMBL),   A0A8C0Z227 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000014617   ⟸   ENSCAFT00000015790
RefSeq Acc Id: XP_038376506   ⟸   XM_038520578
RefSeq Acc Id: XP_038504564   ⟸   XM_038648636
RefSeq Acc Id: XP_038302363   ⟸   XM_038446435
- UniProtKB: A0A8C0KFM3 (UniProtKB/TrEMBL),   A0A8C0MVF2 (UniProtKB/TrEMBL),   A0A8I3PQD8 (UniProtKB/TrEMBL),   A0A8C0Z227 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038440155   ⟸   XM_038584227
- UniProtKB: A0A8C0KFM3 (UniProtKB/TrEMBL),   A0A8C0MVF2 (UniProtKB/TrEMBL),   A0A8C0Z227 (UniProtKB/TrEMBL),   A0A8I3PQD8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845033713   ⟸   ENSCAFT00845042999
RefSeq Acc Id: ENSCAFP00845033787   ⟸   ENSCAFT00845043098
Promoters
RGD ID:13688977
Promoter ID:EPDNEW_C7044
Type:initiation region
Name:GMPR_1
Description:guanosine monophosphate reductase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13515,400,979 - 15,401,039EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009920 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030009480 UniProtKB/TrEMBL
  ENSCAFG00040019322 UniProtKB/TrEMBL
  ENSCAFG00845024346 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000015790.5 UniProtKB/TrEMBL
  ENSCAFT00000108123.1 UniProtKB/TrEMBL
  ENSCAFT00030017546.1 UniProtKB/TrEMBL
  ENSCAFT00040035749.1 UniProtKB/TrEMBL
  ENSCAFT00845042999.1 UniProtKB/TrEMBL
  ENSCAFT00845043098 ENTREZGENE
  ENSCAFT00845043098.1 UniProtKB/TrEMBL
Gene3D-CATH 3.20.20.70 UniProtKB/TrEMBL
InterPro Aldolase_TIM UniProtKB/TrEMBL
  GMPR UniProtKB/TrEMBL
  IMP_DH/GMP_Rdtase_CS UniProtKB/TrEMBL
  IMP_DH_GMPRt UniProtKB/TrEMBL
KEGG Report cfa:488231 UniProtKB/TrEMBL
NCBI Gene GMPR ENTREZGENE
PANTHER GMP REDUCTASE UniProtKB/TrEMBL
  GMP REDUCTASE 1 UniProtKB/TrEMBL
Pfam IMPDH UniProtKB/TrEMBL
PIRSF GMP_reductase UniProtKB/TrEMBL
PROSITE IMP_DH_GMP_RED UniProtKB/TrEMBL
SMART IMPDH UniProtKB/TrEMBL
Superfamily-SCOP Inosine monophosphate dehydrogenase (IMPDH) UniProtKB/TrEMBL
UniProt A0A8C0KFM3 ENTREZGENE
  A0A8C0MVF2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Z227 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PQD8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PR79_CANLF UniProtKB/TrEMBL
  A0A8P0SEX1_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:41294 ENTREZGENE