Gene: BPIFB2 (BPI fold containing family B member 2) Canis lupus familiaris |
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Analyze |
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Symbol: |
BPIFB2 |
Name: |
BPI fold containing family B member 2 |
RGD ID: |
12246237 |
Description: |
ENCODES a protein that exhibits lipid binding (inferred) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
Previously known as: |
bactericidal/permeability-increasing protein-like 1; BPI fold-containing family B member 2; BPIL1 |
RGD Orthologs |
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Alliance Orthologs |
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More Info |
more info ...
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More Info |
Species |
Gene symbol and name |
Data Source |
Assertion derived from |
less info ...
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Orthologs 1 |
Homo sapiens (human): |
BPIFB2 (BPI fold containing family B member 2) |
HGNC |
EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam |
Mus musculus (house mouse): |
Bpifb2 (BPI fold containing family B, member 2) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
Rattus norvegicus (Norway rat): |
Bpifb2 (BPI fold containing family B, member 2) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
Chinchilla lanigera (long-tailed chinchilla): |
Bpifb2 (BPI fold containing family B member 2) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
Pan paniscus (bonobo/pygmy chimpanzee): |
BPIFB2 (BPI fold containing family B member 2) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
Ictidomys tridecemlineatus (thirteen-lined ground squirrel): |
Bpifb2 (BPI fold containing family B member 2) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
Sus scrofa (pig): |
BPIFB2 (BPI fold containing family B member 2) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
Chlorocebus sabaeus (green monkey): |
BPIFB2 (BPI fold containing family B member 2) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
Heterocephalus glaber (naked mole-rat): |
Bpifb2 (BPI fold containing family B member 2) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
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Latest Assembly: |
CanFam3.1 - Dog CanFam3.1 Assembly |
Position: |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 24 | 22,274,947 - 22,294,393 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 24 | 22,274,841 - 22,294,725 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 24 | 21,920,624 - 21,940,041 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 24 | 22,960,757 - 22,980,149 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 24 | 22,960,712 - 22,980,394 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 24 | 22,236,396 - 22,255,773 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 24 | 22,346,432 - 22,365,839 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 24 | 22,777,390 - 22,796,820 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Additional References at PubMed
Genomics
Comparative Map Data
BPIFB2 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 24 | 22,274,947 - 22,294,393 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 24 | 22,274,841 - 22,294,725 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 24 | 21,920,624 - 21,940,041 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 24 | 22,960,757 - 22,980,149 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 24 | 22,960,712 - 22,980,394 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 24 | 22,236,396 - 22,255,773 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 24 | 22,346,432 - 22,365,839 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 24 | 22,777,390 - 22,796,820 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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BPIFB2 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 20 | 33,007,704 - 33,023,703 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 20 | 33,007,704 - 33,023,703 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 20 | 31,595,510 - 31,611,509 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 20 | 31,059,068 - 31,075,176 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 20 | 31,059,067 - 31,075,176 | NCBI | | | | | Celera | 20 | 28,349,284 - 28,365,392 (+) | NCBI | | Celera | | | Cytogenetic Map | 20 | q11.21 | NCBI | | | | | HuRef | 20 | 28,382,760 - 28,398,634 (+) | NCBI | | HuRef | | | CHM1_1 | 20 | 31,495,524 - 31,511,655 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 20 | 34,734,395 - 34,750,394 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Bpifb2 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 2 | 153,716,925 - 153,737,190 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 2 | 153,716,965 - 153,737,190 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 2 | 153,875,045 - 153,895,270 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 2 | 153,875,045 - 153,895,270 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 2 | 153,700,781 - 153,721,006 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 2 | 153,566,514 - 153,586,711 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 2 | 159,708,144 - 159,731,152 (+) | NCBI | | Celera | | | Cytogenetic Map | 2 | H1 | NCBI | | | | | cM Map | 2 | 75.99 | NCBI | | | | |
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Bpifb2 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 3 | 162,818,223 - 162,837,219 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 3 | 142,356,990 - 142,377,053 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 3 | 142,358,051 - 142,377,044 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 3 | 146,260,164 - 146,279,188 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 3 | 154,843,993 - 154,863,023 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 3 | 152,584,256 - 152,603,278 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 3 | 149,358,881 - 149,377,867 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 3 | 149,358,881 - 149,377,867 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 3 | 155,736,658 - 155,755,653 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 3 | 144,260,247 - 144,279,234 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 3 | 144,167,023 - 144,184,851 (+) | NCBI | | | | | Celera | 3 | 141,099,214 - 141,118,195 (+) | NCBI | | Celera | | | Cytogenetic Map | 3 | q41 | NCBI | | | | |
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Bpifb2 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955422 | 28,233,236 - 28,249,681 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955422 | 28,233,236 - 28,251,627 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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BPIFB2 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 21 | 38,697,027 - 38,713,026 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 20 | 38,690,125 - 38,706,124 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 20 | 29,293,661 - 29,309,775 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 20 | 30,412,028 - 30,428,185 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 20 | 30,412,028 - 30,428,185 (+) | Ensembl | panpan1.1 | | panPan2 | |
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Bpifb2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024408640 | 171,275,256 - 171,292,007 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936485 | 19,707,914 - 19,723,323 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936485 | 19,707,914 - 19,724,782 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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BPIFB2 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 17 | 36,531,402 - 36,553,404 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 17 | 36,531,485 - 36,553,410 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 17 | 41,468,494 - 41,491,070 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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BPIFB2 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 2 | 37,378,929 - 37,394,852 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 2 | 37,379,651 - 37,394,376 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666050 | 89,510,013 - 89,526,042 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Bpifb2 (Heterocephalus glaber - naked mole-rat) |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
exocrine system |
hemolymphoid system |
hepatobiliary system |
integumental system |
musculoskeletal system |
nervous system |
reproductive system |
respiratory system |
High |
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Medium |
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Low |
4
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Below cutoff |
1
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2
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11
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1
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4
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1
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5
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1
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6
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8
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9
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Sequence
RefSeq Acc Id: |
ENSCAFT00000011737 ⟹ ENSCAFP00000010879 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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CanFam3.1 Ensembl | 24 | 22,274,841 - 22,294,725 (+) | Ensembl |
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RefSeq Acc Id: |
ENSCAFT00845040584 ⟹ ENSCAFP00845031767 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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ROS_Cfam_1.0 Ensembl | 24 | 22,960,712 - 22,980,394 (+) | Ensembl |
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RefSeq Acc Id: |
XM_038432861 ⟹ XP_038288789 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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ROS_Cfam_1.0 | 24 | 22,960,757 - 22,980,149 (+) | NCBI |
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RefSeq Acc Id: |
XM_038509625 ⟹ XP_038365553 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UMICH_Zoey_3.1 | 24 | 22,236,396 - 22,255,773 (+) | NCBI |
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RefSeq Acc Id: |
XM_038571367 ⟹ XP_038427295 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UU_Cfam_GSD_1.0 | 24 | 22,777,390 - 22,796,820 (+) | NCBI |
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RefSeq Acc Id: |
XM_038635563 ⟹ XP_038491491 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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UNSW_CanFamBas_1.0 | 24 | 22,346,432 - 22,365,839 (+) | NCBI |
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RefSeq Acc Id: |
XM_542958 ⟹ XP_542958 |
Type: |
CODING |
Position: |
Dog Assembly | Chr | Position (strand) | Source |
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CanFam3.1 | 24 | 22,274,947 - 22,294,393 (+) | NCBI | Dog10K_Boxer_Tasha | 24 | 21,920,624 - 21,940,041 (+) | NCBI |
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Sequence: |
TGCAAGCAAACCTGCCCCTCCCTGGGTCCCTTCGCAGTGGGTCCTGCACACCTGGGAGCCTCAT AAAACAGCTTCTGCACCTGTCAAGGGACTCAGGAGGCCTTGGTCAGGGCTGAGAATCCAGTTGT CCCAGGAAACCACCCCAGCCCACAGATCTTGGGGGGCAGTGGCCAGGATGGCCATGGCTCAGGC ATACAGGCTGGATCTGCTGCTAGCGCTGCTGCTGCCTGTGGTCGGCGCCTTGATGCCGGGCACC GTGGTCAGACTCAACGAGGCCGTGCTGAGCTATGTGTCGGAAATCGGGACAGCCCCTCTCCAGC AGGCCCTGCGGGTCACAGTCCCGTATTTCTTGGACTGGAACGAAGAGGTGCATCAGCCCACCAG GATCCAGACTTTGAATGTCCACGTGCCCCACTTCCACCTGAAGTTCATTGCCGATTTTGGGGTG CGCATGTTGGTAGCAGCCAATTTTACTTTCAAAGTCTTTCGAGTCCCGGAGCCCCTGAAGCTGG TGCTGCCCGTGGTACTGCTGGCCGACGCCCAGGTGGCCCAGGGCTCCATCCGGACCCCCGTGGT CAGCATCTCTGCCTGCTTCGCACTCTTCAACAGTGCCGCGGTGCTGGATGGCAGTACCAGCGTG GCCCCTGGGCTGCTGGTCCTGGTGCAGAATCATATTAAAGCTGTCCTGCGGAACAAGCTATGCC TGAGCATCTCCAACCTGGTGCAGGGCCTCAACGTGCACCTGGGCACTTTAATTGGCCTCAACCC TGTGGGTCCAGAGTCCCAGATCCGCTACTCCATGACCAATGCGCCCAACATCACTAAGGACTAC ATTTCCTTGGATATCAGCGCCATTCTTTTCCTACTGGGCAAGCCCATCGTCCTGCCTGTGGATG TCACCCACTTTGTGCTGCCGCCTAACGTGGGTGCTGATGGTGCCATGGCAACCGTGGGCCTCTC CCAAGACCTGTTTGACTCCGCCCTCCTGCTGCTGCAGAAAGCTGGTGCCCTCAACCTGGACATC ACAGGGCAGCTGAAGTCTGAGGACAACCTGCTGAACACCTCTGTGCTGGGCCAGCTCATCCCCG AGGTGGCCCGCCGGTTCCCCGAGCCCATGCCTGTGACTCTCAAGGTGCGGCTGGGTGCCACGCC CGTGGCCACACTTCGTACCAACAATGCCACGCTTCAGCTGCAGCCCTTTGTGGAAGTCCAGGCT GTGACCTCCAACTCAGCTTTCCAGTCCCTCTTCTCCTTTGATGTGGTTGTGAACCTGGACCTCC AGCTCTCTGTGTCCAAGGTGAAGCTTCAGGGCACCACATCTGTGCTGGGGGATATCCAGCTCAC CGTGCGCTCCTCCAATGTGGGCTTCGTTGATACAAATCAGATGCGCCCACTCATGGACACCGTG TTCAAGAGGCCCCTGCTGGATCACCTCAATGCTCTCTTGGGCATGGGGATCACCCTCCCCAGCA TGGTCAACCTGTACTACATCAACCCTGAGGTCTTTGTCTATGAGGGCTATGTCGTGATATCCAG TGGACTCTTATACCAGCGCTGAGGTGGGACCACCAGGAGACCTAGGAGTGGGCCAGCTCCCTGC TTCAGGGACTCTCTTGCCTCAAGCCACTTGGGAAACTGAGGCAAAGCCACACTTACCATCAGCA GCAAGCTGGATGATCCAGCCAGGCTGTTTAATCTTCTCTGCGTGATTGAGCTCCCCTCCCTCCT TTCCCCTCCTCTCCCTCTGTCCCTCCCGTCTCCTTCCCCCTCCATGTGAGCAGCATACCCCTCT TCCAGGCTGTACCAACGTGTCCCCTCTCACATTAAACATTTTCTCTTGA
hide sequence
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RefSeq Acc Id: |
XP_542958 ⟸ XM_542958 |
- UniProtKB: |
A0A8P0N9P7 (UniProtKB/TrEMBL), A0A8C0QVB1 (UniProtKB/TrEMBL) |
- Sequence: |
MAMAQAYRLDLLLALLLPVVGALMPGTVVRLNEAVLSYVSEIGTAPLQQALRVTVPYFLDWNEE VHQPTRIQTLNVHVPHFHLKFIADFGVRMLVAANFTFKVFRVPEPLKLVLPVVLLADAQVAQGS IRTPVVSISACFALFNSAAVLDGSTSVAPGLLVLVQNHIKAVLRNKLCLSISNLVQGLNVHLGT LIGLNPVGPESQIRYSMTNAPNITKDYISLDISAILFLLGKPIVLPVDVTHFVLPPNVGADGAM ATVGLSQDLFDSALLLLQKAGALNLDITGQLKSEDNLLNTSVLGQLIPEVARRFPEPMPVTLKV RLGATPVATLRTNNATLQLQPFVEVQAVTSNSAFQSLFSFDVVVNLDLQLSVSKVKLQGTTSVL GDIQLTVRSSNVGFVDTNQMRPLMDTVFKRPLLDHLNALLGMGITLPSMVNLYYINPEVFVYEG YVVISSGLLYQR
hide sequence
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RefSeq Acc Id: |
ENSCAFP00000010879 ⟸ ENSCAFT00000011737 |
RefSeq Acc Id: |
XP_038365553 ⟸ XM_038509625 |
RefSeq Acc Id: |
XP_038491491 ⟸ XM_038635563 |
RefSeq Acc Id: |
XP_038288789 ⟸ XM_038432861 |
- UniProtKB: |
A0A8I3S3D7 (UniProtKB/TrEMBL), A0A8C0QVB1 (UniProtKB/TrEMBL) |
RefSeq Acc Id: |
XP_038427295 ⟸ XM_038571367 |
- UniProtKB: |
A0A8C0QVB1 (UniProtKB/TrEMBL) |
RefSeq Acc Id: |
ENSCAFP00845031767 ⟸ ENSCAFT00845040584 |
Promoters
RGD ID: | 13687570 |
Promoter ID: | EPDNEW_C5638 |
Type: | multiple initiation site |
Name: | BPIFB2_1 |
Description: | BPI fold containing family B member 2 |
SO ACC ID: | SO:0000170 |
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) |
Experiment Methods: | Single-end sequencing. |
Position: | Dog Assembly | Chr | Position (strand) | Source |
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CanFam3.1 | 24 | 22,275,923 - 22,275,983 | EPDNEW |
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Additional Information
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