BPIFB2 (BPI fold containing family B member 2) - Rat Genome Database

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Gene: BPIFB2 (BPI fold containing family B member 2) Canis lupus familiaris
Analyze
Symbol: BPIFB2
Name: BPI fold containing family B member 2
RGD ID: 12246237
Description: ENCODES a protein that exhibits lipid binding (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: bactericidal/permeability-increasing protein-like 1; BPI fold-containing family B member 2; BPIL1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12422,274,947 - 22,294,393 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2422,274,841 - 22,294,725 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2421,920,624 - 21,940,041 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02422,960,757 - 22,980,149 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2422,960,712 - 22,980,394 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12422,236,396 - 22,255,773 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02422,346,432 - 22,365,839 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02422,777,390 - 22,796,820 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:21787333   PMID:22301074  


Genomics

Comparative Map Data
BPIFB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12422,274,947 - 22,294,393 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2422,274,841 - 22,294,725 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2421,920,624 - 21,940,041 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02422,960,757 - 22,980,149 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2422,960,712 - 22,980,394 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12422,236,396 - 22,255,773 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02422,346,432 - 22,365,839 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02422,777,390 - 22,796,820 (+)NCBIUU_Cfam_GSD_1.0
BPIFB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382033,007,704 - 33,023,703 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2033,007,704 - 33,023,703 (+)EnsemblGRCh38hg38GRCh38
GRCh372031,595,510 - 31,611,509 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362031,059,068 - 31,075,176 (+)NCBINCBI36Build 36hg18NCBI36
Build 342031,059,067 - 31,075,176NCBI
Celera2028,349,284 - 28,365,392 (+)NCBICelera
Cytogenetic Map20q11.21NCBI
HuRef2028,382,760 - 28,398,634 (+)NCBIHuRef
CHM1_12031,495,524 - 31,511,655 (+)NCBICHM1_1
T2T-CHM13v2.02034,734,395 - 34,750,394 (+)NCBIT2T-CHM13v2.0
Bpifb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392153,716,925 - 153,737,190 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2153,716,965 - 153,737,190 (+)EnsemblGRCm39 Ensembl
GRCm382153,875,045 - 153,895,270 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2153,875,045 - 153,895,270 (+)EnsemblGRCm38mm10GRCm38
MGSCv372153,700,781 - 153,721,006 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362153,566,514 - 153,586,711 (+)NCBIMGSCv36mm8
Celera2159,708,144 - 159,731,152 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map275.99NCBI
Bpifb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83162,818,223 - 162,837,219 (+)NCBIGRCr8
mRatBN7.23142,356,990 - 142,377,053 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3142,358,051 - 142,377,044 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3146,260,164 - 146,279,188 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03154,843,993 - 154,863,023 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03152,584,256 - 152,603,278 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03149,358,881 - 149,377,867 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3149,358,881 - 149,377,867 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03155,736,658 - 155,755,653 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43144,260,247 - 144,279,234 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13144,167,023 - 144,184,851 (+)NCBI
Celera3141,099,214 - 141,118,195 (+)NCBICelera
Cytogenetic Map3q41NCBI
Bpifb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542228,233,236 - 28,249,681 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542228,233,236 - 28,251,627 (-)NCBIChiLan1.0ChiLan1.0
BPIFB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22138,697,027 - 38,713,026 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12038,690,125 - 38,706,124 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02029,293,661 - 29,309,775 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12030,412,028 - 30,428,185 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2030,412,028 - 30,428,185 (+)Ensemblpanpan1.1panPan2
Bpifb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640171,275,256 - 171,292,007 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648519,707,914 - 19,723,323 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648519,707,914 - 19,724,782 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BPIFB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1736,531,402 - 36,553,404 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11736,531,485 - 36,553,410 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21741,468,494 - 41,491,070 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BPIFB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1237,378,929 - 37,394,852 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl237,379,651 - 37,394,376 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605089,510,013 - 89,526,042 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bpifb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248426,270,008 - 6,285,449 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248426,269,987 - 6,285,457 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BPIFB2
305 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system
High
Medium
Low 4
Below cutoff 1 2 11 1 4 1 5 1 6 8 9

Sequence


RefSeq Acc Id: ENSCAFT00000011737   ⟹   ENSCAFP00000010879
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2422,274,841 - 22,294,725 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845040584   ⟹   ENSCAFP00845031767
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2422,960,712 - 22,980,394 (+)Ensembl
RefSeq Acc Id: XM_038432861   ⟹   XP_038288789
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02422,960,757 - 22,980,149 (+)NCBI
RefSeq Acc Id: XM_038509625   ⟹   XP_038365553
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12422,236,396 - 22,255,773 (+)NCBI
RefSeq Acc Id: XM_038571367   ⟹   XP_038427295
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02422,777,390 - 22,796,820 (+)NCBI
RefSeq Acc Id: XM_038635563   ⟹   XP_038491491
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02422,346,432 - 22,365,839 (+)NCBI
RefSeq Acc Id: XM_542958   ⟹   XP_542958
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12422,274,947 - 22,294,393 (+)NCBI
Dog10K_Boxer_Tasha2421,920,624 - 21,940,041 (+)NCBI
Sequence:
RefSeq Acc Id: XP_542958   ⟸   XM_542958
- UniProtKB: A0A8P0N9P7 (UniProtKB/TrEMBL),   A0A8C0QVB1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000010879   ⟸   ENSCAFT00000011737
RefSeq Acc Id: XP_038365553   ⟸   XM_038509625
RefSeq Acc Id: XP_038491491   ⟸   XM_038635563
RefSeq Acc Id: XP_038288789   ⟸   XM_038432861
- UniProtKB: A0A8I3S3D7 (UniProtKB/TrEMBL),   A0A8C0QVB1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038427295   ⟸   XM_038571367
- UniProtKB: A0A8C0QVB1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845031767   ⟸   ENSCAFT00845040584
Promoters
RGD ID:13687570
Promoter ID:EPDNEW_C5638
Type:multiple initiation site
Name:BPIFB2_1
Description:BPI fold containing family B member 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12422,275,923 - 22,275,983EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000007329 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845022982 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000011737.4 UniProtKB/TrEMBL
  ENSCAFT00845040584 ENTREZGENE
  ENSCAFT00845040584.1 UniProtKB/TrEMBL
InterPro Bactericidal_perm-incr_a/b_dom UniProtKB/TrEMBL
  Lipid-bd_serum_glycop_C UniProtKB/TrEMBL
  Lipid-bd_serum_glycop_N UniProtKB/TrEMBL
NCBI Gene BPIFB2 ENTREZGENE
PANTHER BPI FOLD-CONTAINING FAMILY B MEMBER 2 UniProtKB/TrEMBL
  BPI FOLD-CONTAINING FAMILY B MEMBER 4-RELATED UniProtKB/TrEMBL
Pfam LBP_BPI_CETP UniProtKB/TrEMBL
  LBP_BPI_CETP_C UniProtKB/TrEMBL
SMART BPI2 UniProtKB/TrEMBL
Superfamily-SCOP SSF55394 UniProtKB/TrEMBL
UniProt A0A8C0QVB1 ENTREZGENE
  A0A8I3S3D7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0N9P7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38508 ENTREZGENE