SHOC2 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 28 | 22,241,886 - 22,338,418 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 28 | 22,285,125 - 22,336,545 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 28 | 22,393,960 - 22,490,541 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 28 | 22,766,445 - 22,863,097 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 28 | 22,767,302 - 22,863,077 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 28 | 22,325,648 - 22,422,221 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 28 | 22,332,434 - 22,429,036 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 28 | 22,466,604 - 22,563,246 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
|
SHOC2 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 10 | 110,919,370 - 111,013,665 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 10 | 110,919,367 - 111,017,307 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 10 | 112,679,128 - 112,773,423 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 10 | 112,713,903 - 112,763,413 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 10 | 112,713,902 - 112,763,412 | NCBI | | | | | Celera | 10 | 106,410,898 - 106,505,011 (+) | NCBI | | Celera | | | Cytogenetic Map | 10 | q25.2 | NCBI | | | | | HuRef | 10 | 106,308,147 - 106,402,174 (+) | NCBI | | HuRef | | | CHM1_1 | 10 | 112,961,089 - 113,055,240 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 10 | 111,803,149 - 111,897,478 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Shoc2 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 19 | 53,932,018 - 54,021,711 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 19 | 53,932,737 - 54,021,564 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 19 | 53,944,232 - 54,033,280 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 19 | 53,944,306 - 54,033,133 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 19 | 54,018,796 - 54,107,768 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 19 | 53,997,618 - 54,086,179 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 19 | 56,139,278 - 56,228,071 (+) | NCBI | | Celera | | | Cytogenetic Map | 19 | D2 | NCBI | | | | | cM Map | 19 | 48.83 | NCBI | | | | |
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Shoc2 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 1 | 262,964,345 - 263,052,898 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 1 | 252,958,939 - 253,048,820 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 1 | 252,959,723 - 253,047,337 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 1 | 261,185,439 - 261,235,437 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 1 | 267,891,515 - 267,941,516 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 1 | 260,546,911 - 260,597,396 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 1 | 274,700,621 - 274,751,195 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 1 | 274,688,580 - 274,751,816 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 1 | 282,112,968 - 282,163,542 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 1 | 260,255,253 - 260,273,170 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 1 | 260,429,356 - 260,484,216 (+) | NCBI | | | | | Celera | 1 | 248,709,991 - 248,759,976 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | q55 | NCBI | | | | |
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Shoc2 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChiLan1.0 Ensembl | NW_004955485 | 430,493 - 517,126 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955485 | 430,493 - 517,767 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SHOC2 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 8 | 122,800,353 - 122,894,149 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 10 | 122,805,689 - 122,899,485 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 10 | 107,512,795 - 107,606,627 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 10 | 110,961,764 - 111,055,312 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 10 | 110,993,556 - 111,055,312 (+) | Ensembl | panpan1.1 | | panPan2 | |
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Shoc2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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SHOC2 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 14 | 121,349,059 - 121,444,136 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 14 | 121,347,938 - 121,444,144 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 14 | 132,275,134 - 132,378,299 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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SHOC2 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 9 | 103,857,229 - 103,954,724 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 9 | 103,857,218 - 103,956,602 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666048 | 65,062,876 - 65,154,464 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Shoc2 (Heterocephalus glaber - naked mole-rat) |
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