LOC611915 (calcium-binding mitochondrial carrier protein SCaMC-1-like) - Rat Genome Database

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Gene: LOC611915 (calcium-binding mitochondrial carrier protein SCaMC-1-like) Canis lupus familiaris
Analyze
No known orthologs.
Symbol: LOC611915 (Ensembl: SLC25A24)
Name: calcium-binding mitochondrial carrier protein SCaMC-1-like (Ensembl:solute carrier family 25 member 24)
RGD ID: 12225367
Description: ENCODES a protein that exhibits ATP transmembrane transporter activity (inferred); calcium ion binding (inferred); metal ion binding (inferred); INVOLVED IN ADP transport (inferred); ATP transport (inferred); transmembrane transport (inferred); FOUND IN membrane (inferred); mitochondrial inner membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1643,354,916 - 43,404,555 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl643,354,910 - 43,476,039 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha646,136,485 - 46,186,029 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0643,629,139 - 43,679,019 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl643,629,062 - 43,751,221 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1643,363,628 - 43,413,442 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0643,333,809 - 43,383,640 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0643,763,216 - 43,813,098 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC611915
569 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005621847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022420402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022420403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038479877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038479878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038479879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038479880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038669961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038669962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038669963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038669964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_849638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000031721   ⟹   ENSCAFP00000029533
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl643,354,910 - 43,476,039 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000045931   ⟹   ENSCAFP00000038274
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl643,354,910 - 43,403,959 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000072176   ⟹   ENSCAFP00000053359
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl643,354,910 - 43,476,039 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000074351   ⟹   ENSCAFP00000055756
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl643,354,910 - 43,476,039 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000081070   ⟹   ENSCAFP00000062930
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl643,354,910 - 43,404,490 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000081627   ⟹   ENSCAFP00000043737
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl643,354,910 - 43,382,181 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845015834   ⟹   ENSCAFP00845012317
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl643,629,062 - 43,751,221 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845015922   ⟹   ENSCAFP00845012390
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl643,629,062 - 43,751,221 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845015986   ⟹   ENSCAFP00845012435
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl643,629,062 - 43,678,423 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845016038   ⟹   ENSCAFP00845012471
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl643,629,062 - 43,656,982 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845016060   ⟹   ENSCAFP00845012488
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl643,667,056 - 43,751,221 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845016088   ⟹   ENSCAFP00845012512
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl643,702,721 - 43,751,221 (+)Ensembl
RefSeq Acc Id: XM_005621847   ⟹   XP_005621904
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1643,354,916 - 43,404,406 (+)NCBI
Dog10K_Boxer_Tasha646,136,485 - 46,185,931 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022420402   ⟹   XP_022276110
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1643,354,916 - 43,404,406 (+)NCBI
Dog10K_Boxer_Tasha646,136,485 - 46,185,931 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022420403   ⟹   XP_022276111
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1643,354,916 - 43,404,555 (+)NCBI
Dog10K_Boxer_Tasha646,136,485 - 46,186,029 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038479877   ⟹   XP_038335805
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1643,363,628 - 43,413,344 (+)NCBI
RefSeq Acc Id: XM_038479878   ⟹   XP_038335806
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1643,363,628 - 43,413,344 (+)NCBI
RefSeq Acc Id: XM_038479879   ⟹   XP_038335807
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1643,363,628 - 43,413,344 (+)NCBI
RefSeq Acc Id: XM_038479880   ⟹   XP_038335808
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1643,363,628 - 43,413,442 (+)NCBI
RefSeq Acc Id: XM_038541159   ⟹   XP_038397087
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0643,763,216 - 43,812,949 (+)NCBI
RefSeq Acc Id: XM_038541160   ⟹   XP_038397088
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0643,763,216 - 43,812,949 (+)NCBI
RefSeq Acc Id: XM_038541161   ⟹   XP_038397089
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0643,763,216 - 43,812,949 (+)NCBI
RefSeq Acc Id: XM_038541162   ⟹   XP_038397090
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0643,763,216 - 43,813,098 (+)NCBI
RefSeq Acc Id: XM_038605313   ⟹   XP_038461241
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0643,333,809 - 43,383,542 (+)NCBI
RefSeq Acc Id: XM_038605314   ⟹   XP_038461242
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0643,333,809 - 43,383,542 (+)NCBI
RefSeq Acc Id: XM_038605315   ⟹   XP_038461243
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0643,333,809 - 43,383,542 (+)NCBI
RefSeq Acc Id: XM_038605316   ⟹   XP_038461244
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0643,333,809 - 43,383,640 (+)NCBI
RefSeq Acc Id: XM_038669961   ⟹   XP_038525889
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0643,629,139 - 43,678,870 (+)NCBI
RefSeq Acc Id: XM_038669962   ⟹   XP_038525890
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0643,629,139 - 43,678,870 (+)NCBI
RefSeq Acc Id: XM_038669963   ⟹   XP_038525891
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0643,629,139 - 43,678,870 (+)NCBI
RefSeq Acc Id: XM_038669964   ⟹   XP_038525892
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0643,629,139 - 43,679,019 (+)NCBI
RefSeq Acc Id: XM_849638   ⟹   XP_854731
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1643,354,916 - 43,404,406 (+)NCBI
Dog10K_Boxer_Tasha646,136,485 - 46,185,931 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005621904 (Get FASTA)   NCBI Sequence Viewer  
  XP_022276110 (Get FASTA)   NCBI Sequence Viewer  
  XP_022276111 (Get FASTA)   NCBI Sequence Viewer  
  XP_038335805 (Get FASTA)   NCBI Sequence Viewer  
  XP_038335806 (Get FASTA)   NCBI Sequence Viewer  
  XP_038335807 (Get FASTA)   NCBI Sequence Viewer  
  XP_038335808 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397087 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397088 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397089 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397090 (Get FASTA)   NCBI Sequence Viewer  
  XP_038461241 (Get FASTA)   NCBI Sequence Viewer  
  XP_038461242 (Get FASTA)   NCBI Sequence Viewer  
  XP_038461243 (Get FASTA)   NCBI Sequence Viewer  
  XP_038461244 (Get FASTA)   NCBI Sequence Viewer  
  XP_038525889 (Get FASTA)   NCBI Sequence Viewer  
  XP_038525890 (Get FASTA)   NCBI Sequence Viewer  
  XP_038525891 (Get FASTA)   NCBI Sequence Viewer  
  XP_038525892 (Get FASTA)   NCBI Sequence Viewer  
  XP_854731 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000029533.4
  ENSCAFP00000038274.1
  ENSCAFP00000043737.2
  ENSCAFP00000053359.1
  ENSCAFP00000055756.2
  ENSCAFP00030013012.1
  ENSCAFP00040000405.1
  ENSCAFP00845012317.1
  ENSCAFP00845012390.1
  ENSCAFP00845012435
  ENSCAFP00845012435.1
  ENSCAFP00845012471.1
  ENSCAFP00845012488.1
Reference Protein Sequences
RefSeq Acc Id: XP_005621904   ⟸   XM_005621847
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KDF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_854731   ⟸   XM_849638
- Peptide Label: isoform X2
- UniProtKB: A0A8I3N5R9 (UniProtKB/TrEMBL),   A0A8P0NPZ2 (UniProtKB/TrEMBL),   A0A8C0KDF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022276111   ⟸   XM_022420403
- Peptide Label: isoform X4
- UniProtKB: A0A8C0KDF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022276110   ⟸   XM_022420402
- Peptide Label: isoform X3
- UniProtKB: A0A8C0KDF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000055756   ⟸   ENSCAFT00000074351
RefSeq Acc Id: ENSCAFP00000038274   ⟸   ENSCAFT00000045931
RefSeq Acc Id: ENSCAFP00000053359   ⟸   ENSCAFT00000072176
RefSeq Acc Id: ENSCAFP00000029533   ⟸   ENSCAFT00000031721
RefSeq Acc Id: ENSCAFP00000062930   ⟸   ENSCAFT00000081070
RefSeq Acc Id: ENSCAFP00000043737   ⟸   ENSCAFT00000081627
RefSeq Acc Id: XP_038335808   ⟸   XM_038479880
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038335805   ⟸   XM_038479877
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038335807   ⟸   XM_038479879
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038335806   ⟸   XM_038479878
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038461244   ⟸   XM_038605316
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038461241   ⟸   XM_038605313
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038461243   ⟸   XM_038605315
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038461242   ⟸   XM_038605314
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038525892   ⟸   XM_038669964
- Peptide Label: isoform X4
- UniProtKB: A0A8C0KDF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038525889   ⟸   XM_038669961
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KDF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038525891   ⟸   XM_038669963
- Peptide Label: isoform X3
- UniProtKB: A0A8C0KDF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038525890   ⟸   XM_038669962
- Peptide Label: isoform X2
- UniProtKB: A0A8I3N5R9 (UniProtKB/TrEMBL),   A0A8P0NPZ2 (UniProtKB/TrEMBL),   A0A8C0KDF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397090   ⟸   XM_038541162
- Peptide Label: isoform X4
- UniProtKB: A0A8C0KDF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397087   ⟸   XM_038541159
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KDF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397089   ⟸   XM_038541161
- Peptide Label: isoform X3
- UniProtKB: A0A8C0KDF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397088   ⟸   XM_038541160
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KDF6 (UniProtKB/TrEMBL),   A0A8I3N5R9 (UniProtKB/TrEMBL),   A0A8P0NPZ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845012435   ⟸   ENSCAFT00845015986
RefSeq Acc Id: ENSCAFP00845012390   ⟸   ENSCAFT00845015922
RefSeq Acc Id: ENSCAFP00845012317   ⟸   ENSCAFT00845015834
RefSeq Acc Id: ENSCAFP00845012488   ⟸   ENSCAFT00845016060
RefSeq Acc Id: ENSCAFP00845012471   ⟸   ENSCAFT00845016038
RefSeq Acc Id: ENSCAFP00845012512   ⟸   ENSCAFT00845016088
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000041140 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030008129 UniProtKB/TrEMBL
  ENSCAFG00040000298 UniProtKB/TrEMBL
  ENSCAFG00845008970 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000031721.5 UniProtKB/TrEMBL
  ENSCAFT00000045931.3 UniProtKB/TrEMBL
  ENSCAFT00000072176.2 UniProtKB/TrEMBL
  ENSCAFT00000074351.2 UniProtKB/TrEMBL
  ENSCAFT00000081627.2 UniProtKB/TrEMBL
  ENSCAFT00030014914.1 UniProtKB/TrEMBL
  ENSCAFT00040000493.1 UniProtKB/TrEMBL
  ENSCAFT00845015834.1 UniProtKB/TrEMBL
  ENSCAFT00845015922.1 UniProtKB/TrEMBL
  ENSCAFT00845015986 ENTREZGENE
  ENSCAFT00845015986.1 UniProtKB/TrEMBL
  ENSCAFT00845016038.1 UniProtKB/TrEMBL
  ENSCAFT00845016060.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  Graves_DC UniProtKB/TrEMBL
  Mit_carrier UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC611915 ENTREZGENE
PANTHER CALCIUM-BINDING MITOCHONDRIAL CARRIER PROTEIN SCAMC-1 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 25 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 25, MEMBER 54 UniProtKB/TrEMBL
Pfam EF-hand_5 UniProtKB/TrEMBL
  EF-hand_7 UniProtKB/TrEMBL
  EF-hand_8 UniProtKB/TrEMBL
  Mito_carr UniProtKB/TrEMBL
PRINTS GRAVESDC UniProtKB/TrEMBL
  MITOCARRIER UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  SOLCAR UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
UniProt A0A8C0KDF6 ENTREZGENE
  A0A8C0Q1B5_CANLF UniProtKB/TrEMBL
  A0A8I3N0Y2_CANLF UniProtKB/TrEMBL
  A0A8I3N144_CANLF UniProtKB/TrEMBL
  A0A8I3N5R9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N5U7_CANLF UniProtKB/TrEMBL
  A0A8I3NMA1_CANLF UniProtKB/TrEMBL
  A0A8P0NPZ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0P306_CANLF UniProtKB/TrEMBL
  A0A8P0SX41_CANLF UniProtKB/TrEMBL
  A0A8P0T7Z4_CANLF UniProtKB/TrEMBL