ATG101 (autophagy related 101) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: ATG101 (autophagy related 101) Canis lupus familiaris
Analyze
Symbol: ATG101
Name: autophagy related 101
RGD ID: 12225169
Description: ENCODES a protein that exhibits identical protein binding (inferred); protein-containing complex binding (inferred); INVOLVED IN autophagosome assembly (inferred); autophagy (inferred); negative regulation of cell population proliferation (inferred); ASSOCIATED WITH cholangiocarcinoma (ortholog); colon cancer (ortholog); hepatocellular carcinoma (ortholog); FOUND IN Atg1/ULK1 kinase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: autophagy-related protein 101; C27H12orf44
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,931,595 - 2,934,914 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl272,931,893 - 2,935,123 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2743,317,316 - 43,324,391 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0272,928,791 - 2,935,881 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl272,928,794 - 2,935,861 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1272,945,425 - 2,950,072 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0272,931,788 - 2,938,961 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02743,715,530 - 43,722,606 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATG101
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,931,595 - 2,934,914 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl272,931,893 - 2,935,123 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2743,317,316 - 43,324,391 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0272,928,791 - 2,935,881 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl272,928,794 - 2,935,861 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1272,945,425 - 2,950,072 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0272,931,788 - 2,938,961 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02743,715,530 - 43,722,606 (+)NCBIUU_Cfam_GSD_1.0
ATG101
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381252,065,300 - 52,077,495 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1252,069,246 - 52,077,495 (+)EnsemblGRCh38hg38GRCh38
GRCh371252,463,762 - 52,471,279 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361250,750,025 - 50,757,546 (+)NCBINCBI36Build 36hg18NCBI36
Celera1251,266,432 - 51,273,953 (+)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1249,496,921 - 49,504,446 (+)NCBIHuRef
CHM1_11252,430,002 - 52,437,523 (+)NCBICHM1_1
T2T-CHM13v2.01252,028,879 - 52,041,075 (+)NCBIT2T-CHM13v2.0
Atg101
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915101,182,182 - 101,188,855 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15101,182,153 - 101,188,826 (+)EnsemblGRCm39 Ensembl
GRCm3815101,284,301 - 101,290,947 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15101,284,272 - 101,290,945 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715101,114,732 - 101,121,365 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615101,112,335 - 101,118,968 (+)NCBIMGSCv36mm8
Celera15103,432,360 - 103,438,993 (+)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.67NCBI
Atg101
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87134,277,223 - 134,286,387 (+)NCBIGRCr8
mRatBN7.27132,398,477 - 132,407,643 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7132,398,483 - 132,407,633 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7134,200,027 - 134,209,527 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07136,429,543 - 136,439,043 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07136,339,980 - 136,348,905 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07142,929,381 - 142,938,559 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7142,929,400 - 142,938,554 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07140,730,251 - 140,739,416 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47140,029,813 - 140,038,925 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17140,106,249 - 140,115,362 (+)NCBI
Celera7128,863,838 - 128,872,961 (+)NCBICelera
Cytogenetic Map7q36NCBI
Atg101
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555472,436,895 - 2,446,849 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555472,436,974 - 2,446,849 (+)NCBIChiLan1.0ChiLan1.0
ATG101
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21042,118,333 - 42,126,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11242,115,096 - 42,123,381 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01236,685,897 - 36,693,613 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11237,462,533 - 37,470,277 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1237,462,533 - 37,470,062 (-)Ensemblpanpan1.1panPan2
Atg101
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494563,638,844 - 63,646,743 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365129,518,074 - 9,526,961 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365129,518,128 - 9,525,986 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATG101
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl517,418,121 - 17,425,624 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1517,418,085 - 17,425,770 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ATG101
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11148,243,200 - 48,251,129 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1148,243,216 - 48,251,371 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037197,841,049 - 197,849,553 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atg101
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624816255,432 - 262,151 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624816255,443 - 261,636 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATG101
84 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000047933   ⟹   ENSCAFP00000040870
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl272,931,893 - 2,935,123 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845047250   ⟹   ENSCAFP00845037083
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl272,928,794 - 2,935,861 (-)Ensembl
RefSeq Acc Id: XM_038438121   ⟹   XP_038294049
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0272,928,791 - 2,935,881 (-)NCBI
RefSeq Acc Id: XM_038438122   ⟹   XP_038294050
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0272,928,791 - 2,932,750 (-)NCBI
RefSeq Acc Id: XM_038460134   ⟹   XP_038316062
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2743,317,316 - 43,324,391 (+)NCBI
RefSeq Acc Id: XM_038460135   ⟹   XP_038316063
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2743,320,428 - 43,324,391 (+)NCBI
RefSeq Acc Id: XM_038512816   ⟹   XP_038368744
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1272,945,425 - 2,950,072 (-)NCBI
RefSeq Acc Id: XM_038577724   ⟹   XP_038433652
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02743,715,530 - 43,722,606 (+)NCBI
RefSeq Acc Id: XM_038577725   ⟹   XP_038433653
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02743,718,642 - 43,722,606 (+)NCBI
RefSeq Acc Id: XM_038640578   ⟹   XP_038496506
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0272,931,788 - 2,938,961 (-)NCBI
RefSeq Acc Id: XM_038640579   ⟹   XP_038496507
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0272,931,788 - 2,935,717 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000040870   ⟸   ENSCAFT00000047933
RefSeq Acc Id: XP_038368744   ⟸   XM_038512816
RefSeq Acc Id: XP_038496506   ⟸   XM_038640578
RefSeq Acc Id: XP_038496507   ⟸   XM_038640579
RefSeq Acc Id: XP_038294049   ⟸   XM_038438121
- UniProtKB: A0A8C0JIV5 (UniProtKB/TrEMBL),   A0A8I3PT36 (UniProtKB/TrEMBL),   A0A8P0SUU4 (UniProtKB/TrEMBL),   A0A8C0T0Q0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038294050   ⟸   XM_038438122
- UniProtKB: A0A8C0JIV5 (UniProtKB/TrEMBL),   A0A8I3PT36 (UniProtKB/TrEMBL),   A0A8P0SUU4 (UniProtKB/TrEMBL),   A0A8C0T0Q0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316062   ⟸   XM_038460134
- UniProtKB: A0A8C0JIV5 (UniProtKB/TrEMBL),   A0A8I3PT36 (UniProtKB/TrEMBL),   A0A8P0SUU4 (UniProtKB/TrEMBL),   A0A8C0T0Q0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316063   ⟸   XM_038460135
- UniProtKB: A0A8C0JIV5 (UniProtKB/TrEMBL),   A0A8I3PT36 (UniProtKB/TrEMBL),   A0A8P0SUU4 (UniProtKB/TrEMBL),   A0A8C0T0Q0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433652   ⟸   XM_038577724
- UniProtKB: A0A8C0JIV5 (UniProtKB/TrEMBL),   A0A8C0T0Q0 (UniProtKB/TrEMBL),   A0A8I3PT36 (UniProtKB/TrEMBL),   A0A8P0SUU4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433653   ⟸   XM_038577725
- UniProtKB: A0A8C0JIV5 (UniProtKB/TrEMBL),   A0A8C0T0Q0 (UniProtKB/TrEMBL),   A0A8I3PT36 (UniProtKB/TrEMBL),   A0A8P0SUU4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845037083   ⟸   ENSCAFT00845047250


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000007331 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040018582 UniProtKB/TrEMBL
  ENSCAFG00845026809 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000047933.3 UniProtKB/TrEMBL
  ENSCAFT00040034329.1 UniProtKB/TrEMBL
  ENSCAFT00845047250 ENTREZGENE
  ENSCAFT00845047250.1 UniProtKB/TrEMBL
InterPro ATG101 UniProtKB/TrEMBL
NCBI Gene ATG101 ENTREZGENE
PANTHER AUTOPHAGY-RELATED PROTEIN 101 UniProtKB/TrEMBL
  PTHR13292 UniProtKB/TrEMBL
Pfam ATG101 UniProtKB/TrEMBL
UniProt A0A8C0JIV5 ENTREZGENE
  A0A8C0T0Q0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PT36 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SUU4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38215 ENTREZGENE