MPDU1 (mannose-P-dolichol utilization defect 1) - Rat Genome Database

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Gene: MPDU1 (mannose-P-dolichol utilization defect 1) Canis lupus familiaris
Analyze
Symbol: MPDU1
Name: mannose-P-dolichol utilization defect 1
RGD ID: 12224146
Description: INVOLVED IN dolichol-linked oligosaccharide biosynthetic process (inferred); oligosaccharide biosynthetic process (inferred); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation If (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mannose-P-dolichol utilization defect 1 protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,504,644 - 32,507,903 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,504,695 - 32,507,291 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,644,125 - 32,647,381 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,609,880 - 32,613,136 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,609,928 - 32,612,524 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,577,424 - 32,580,680 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,533,882 - 32,537,138 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,712,997 - 32,716,254 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MPDU1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,504,644 - 32,507,903 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,504,695 - 32,507,291 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,644,125 - 32,647,381 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,609,880 - 32,613,136 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,609,928 - 32,612,524 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,577,424 - 32,580,680 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,533,882 - 32,537,138 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,712,997 - 32,716,254 (+)NCBIUU_Cfam_GSD_1.0
MPDU1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,583,647 - 7,588,212 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,583,529 - 7,592,789 (+)EnsemblGRCh38hg38GRCh38
GRCh37177,486,965 - 7,491,530 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,427,854 - 7,432,247 (+)NCBINCBI36Build 36hg18NCBI36
Build 34177,427,889 - 7,432,228NCBI
Celera177,513,288 - 7,517,853 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,381,129 - 7,385,692 (+)NCBIHuRef
CHM1_1177,495,898 - 7,500,461 (+)NCBICHM1_1
T2T-CHM13v2.0177,487,897 - 7,492,462 (+)NCBIT2T-CHM13v2.0
Mpdu1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,547,523 - 69,553,475 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,547,523 - 69,553,468 (-)EnsemblGRCm39 Ensembl
GRCm381169,656,697 - 69,662,649 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,656,697 - 69,662,642 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,470,206 - 69,476,144 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,240,811 - 70,246,749 (-)NCBIMGSCv36mm8
MGSCv361169,472,899 - 69,478,837 (-)NCBIMGSCv36mm8
Cytogenetic Map11B3NCBI
cM Map1142.86NCBI
Mpdu1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,873,467 - 54,880,536 (-)NCBIGRCr8
mRatBN7.21054,374,719 - 54,380,301 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,374,725 - 54,380,447 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,037,360 - 59,042,938 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,525,912 - 58,531,490 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,033,517 - 54,039,095 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,261,636 - 56,267,213 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,261,637 - 56,267,213 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,007,275 - 56,012,851 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,474,179 - 56,480,188 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11056,487,803 - 56,493,840 (-)NCBI
Celera1053,529,250 - 53,534,838 (-)NCBICelera
Cytogenetic Map10q24NCBI
Mpdu1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,335,488 - 9,339,874 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,335,488 - 9,339,888 (-)NCBIChiLan1.0ChiLan1.0
MPDU1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21915,178,559 - 15,182,920 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11717,144,626 - 17,149,008 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,615,281 - 7,619,831 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,601,561 - 7,606,120 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,601,561 - 7,610,378 (+)Ensemblpanpan1.1panPan2
Mpdu1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,387,859 - 47,391,317 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936595862,241 - 866,607 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936595862,240 - 865,505 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MPDU1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,878,764 - 52,882,863 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,878,924 - 52,882,854 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,291,384 - 55,295,317 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MPDU1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,961,117 - 6,965,991 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl166,961,310 - 6,965,424 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605914,442,794 - 14,447,292 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mpdu1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,199,141 - 10,202,984 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,199,320 - 10,202,997 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MPDU1
36 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 3 12 8 10 6
Low 3
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000026380   ⟹   ENSCAFP00000024498
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl532,504,695 - 32,507,291 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845041759   ⟹   ENSCAFP00845032752
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl532,609,928 - 32,612,524 (+)Ensembl
RefSeq Acc Id: XM_038475538   ⟹   XP_038331466
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1532,577,424 - 32,580,680 (+)NCBI
RefSeq Acc Id: XM_038536707   ⟹   XP_038392635
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0532,712,997 - 32,716,254 (+)NCBI
RefSeq Acc Id: XM_038600883   ⟹   XP_038456811
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0532,533,882 - 32,537,138 (+)NCBI
RefSeq Acc Id: XM_038665426   ⟹   XP_038521354
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0532,609,880 - 32,613,136 (+)NCBI
RefSeq Acc Id: XM_546595   ⟹   XP_546595
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1532,504,644 - 32,507,903 (+)NCBI
Dog10K_Boxer_Tasha532,644,125 - 32,647,381 (+)NCBI
Sequence:
RefSeq Acc Id: XP_546595   ⟸   XM_546595
- UniProtKB: A0A8C0K486 (UniProtKB/TrEMBL),   A0A8C0Q754 (UniProtKB/TrEMBL),   A0A8I3PT73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000024498   ⟸   ENSCAFT00000026380
RefSeq Acc Id: XP_038331466   ⟸   XM_038475538
RefSeq Acc Id: XP_038456811   ⟸   XM_038600883
RefSeq Acc Id: XP_038521354   ⟸   XM_038665426
- UniProtKB: A0A8C0K486 (UniProtKB/TrEMBL),   A0A8C0Q754 (UniProtKB/TrEMBL),   A0A8I3PT73 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038392635   ⟸   XM_038536707
- UniProtKB: A0A8C0K486 (UniProtKB/TrEMBL),   A0A8C0Q754 (UniProtKB/TrEMBL),   A0A8I3PT73 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845032752   ⟸   ENSCAFT00845041759

Promoters
RGD ID:13683229
Promoter ID:EPDNEW_C1298
Type:single initiation site
Name:MPDU1_1
Description:mannose-P-dolichol utilization defect 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1532,504,694 - 32,504,754EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016651 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030015946 UniProtKB/TrEMBL
  ENSCAFG00040005626 UniProtKB/TrEMBL
  ENSCAFG00845023654 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000026380.4 UniProtKB/TrEMBL
  ENSCAFT00030029365.1 UniProtKB/TrEMBL
  ENSCAFT00040010561.1 UniProtKB/TrEMBL
  ENSCAFT00845041759 ENTREZGENE
  ENSCAFT00845041759.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.290 UniProtKB/TrEMBL
InterPro MannP-dilichol_defect-1 UniProtKB/TrEMBL
  PQ-loop_rpt UniProtKB/TrEMBL
NCBI Gene MPDU1 ENTREZGENE
PANTHER MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 PROTEIN UniProtKB/TrEMBL
  PTHR12226 UniProtKB/TrEMBL
Pfam PQ-loop UniProtKB/TrEMBL
PIRSF MannP-dilichol_defect-1p UniProtKB/TrEMBL
SMART CTNS UniProtKB/TrEMBL
UniProt A0A8C0K486 ENTREZGENE
  A0A8C0Q754 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PT73 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:43331 ENTREZGENE