EFCAB6 (EF-hand calcium binding domain 6) - Rat Genome Database

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Gene: EFCAB6 (EF-hand calcium binding domain 6) Canis lupus familiaris
Analyze
Symbol: EFCAB6
Name: EF-hand calcium binding domain 6
RGD ID: 12197020
Description: ENCODES a protein that exhibits calcium ion binding (inferred); metal ion binding (inferred); ASSOCIATED WITH intellectual disability (ortholog); Phelan-McDermid syndrome (ortholog); prostate cancer (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: EF-hand calcium-binding domain-containing protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11021,829,783 - 22,064,034 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1021,831,430 - 22,064,030 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1021,770,460 - 22,004,508 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01022,578,629 - 22,812,813 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1022,580,306 - 22,812,813 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11022,297,954 - 22,531,928 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01022,618,101 - 22,851,011 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01022,792,207 - 23,026,524 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
EFCAB6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11021,829,783 - 22,064,034 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1021,831,430 - 22,064,030 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1021,770,460 - 22,004,508 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01022,578,629 - 22,812,813 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1022,580,306 - 22,812,813 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11022,297,954 - 22,531,928 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01022,618,101 - 22,851,011 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01022,792,207 - 23,026,524 (+)NCBIUU_Cfam_GSD_1.0
EFCAB6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382243,528,778 - 43,812,305 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2243,528,744 - 43,812,337 (-)EnsemblGRCh38hg38GRCh38
GRCh372243,924,658 - 44,208,185 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362242,255,987 - 42,539,451 (-)NCBINCBI36Build 36hg18NCBI36
Celera2227,835,968 - 28,119,513 (-)NCBICelera
Cytogenetic Map22q13.2-q13.31NCBI
HuRef2226,879,130 - 27,162,643 (-)NCBIHuRef
CHM1_12243,883,348 - 44,166,936 (-)NCBICHM1_1
T2T-CHM13v2.02244,011,227 - 44,295,198 (-)NCBIT2T-CHM13v2.0
Efcab6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391583,750,913 - 83,959,226 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1583,750,913 - 83,949,580 (-)EnsemblGRCm39 Ensembl
GRCm381583,866,712 - 84,075,025 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1583,866,712 - 84,065,379 (-)EnsemblGRCm38mm10GRCm38
MGSCv371583,697,142 - 83,895,779 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361583,694,478 - 83,893,115 (-)NCBIMGSCv36mm8
Celera1585,994,081 - 86,195,377 (-)NCBICelera
Cytogenetic Map15E1- E2NCBI
cM Map1539.48NCBI
Efcab6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87116,899,022 - 117,085,998 (-)NCBIGRCr8
mRatBN7.27115,018,971 - 115,200,121 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7115,019,010 - 115,206,092 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.07124,758,376 - 124,948,428 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7124,758,378 - 124,929,025 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07124,747,917 - 124,928,085 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47121,890,922 - 122,024,252 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17121,925,151 - 122,061,799 (-)NCBI
Celera7111,328,391 - 111,511,964 (-)NCBICelera
Cytogenetic Map7q34NCBI
Efcab6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541328,567,634 - 28,783,565 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541328,569,080 - 28,783,455 (-)NCBIChiLan1.0ChiLan1.0
EFCAB6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22353,346,432 - 53,639,641 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12256,039,219 - 56,333,005 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02224,414,362 - 24,700,901 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12242,608,067 - 42,893,414 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2242,608,067 - 42,893,414 (-)Ensemblpanpan1.1panPan2
Efcab6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049455,455,456 - 5,687,089 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367181,293,322 - 1,517,952 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367181,293,088 - 1,501,664 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EFCAB6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.155,166,994 - 5,408,130 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.252,560,013 - 2,802,403 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EFCAB6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11926,023,566 - 26,327,309 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1926,023,643 - 26,295,493 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604599,076,207 - 99,384,797 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Efcab6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247525,313,804 - 5,552,248 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in EFCAB6
1983 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 8
Low 4 16 1 6 12 10 2
Below cutoff 1 5 6 6 5 6 6 4

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014117294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014117295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022424329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022424330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022424331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022424332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022424333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038488368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038488369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038488370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038488371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038488372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038488373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038488374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038550276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038550277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038550278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038550279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038550280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038550281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038550282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038614258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038614259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038614260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038614261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038614262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038614263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038614264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_538339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000001400   ⟹   ENSCAFP00000001286
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1021,831,430 - 22,064,030 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000035329   ⟹   ENSCAFP00000030574
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1021,831,430 - 21,941,600 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000060936   ⟹   ENSCAFP00000046450
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1021,831,430 - 21,925,056 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000081807   ⟹   ENSCAFP00000052593
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1021,831,430 - 21,924,970 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000091001   ⟹   ENSCAFP00000063753
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1021,831,430 - 21,919,527 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845023482   ⟹   ENSCAFP00845018431
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1022,580,306 - 22,812,813 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845023651   ⟹   ENSCAFP00845018566
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1022,580,306 - 22,812,813 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845023757   ⟹   ENSCAFP00845018643
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1022,580,306 - 22,812,813 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845023875   ⟹   ENSCAFP00845018751
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1022,580,306 - 22,812,813 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845024037   ⟹   ENSCAFP00845018880
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1022,580,306 - 22,812,813 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845024170   ⟹   ENSCAFP00845018983
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1022,580,306 - 22,675,256 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845024205   ⟹   ENSCAFP00845019014
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1022,580,306 - 22,673,692 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845024237   ⟹   ENSCAFP00845019042
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1022,596,553 - 22,812,813 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845024263   ⟹   ENSCAFP00845019060
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1022,751,796 - 22,812,805 (+)Ensembl
RefSeq Acc Id: XM_014117294   ⟹   XP_013972769
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11021,829,783 - 22,064,034 (+)NCBI
Dog10K_Boxer_Tasha1021,778,550 - 22,004,508 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014117295   ⟹   XP_013972770
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11021,849,461 - 22,064,034 (+)NCBI
Dog10K_Boxer_Tasha1021,790,173 - 22,004,508 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022424329   ⟹   XP_022280037
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11021,837,809 - 22,064,034 (+)NCBI
Dog10K_Boxer_Tasha1021,778,552 - 22,004,508 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022424331   ⟹   XP_022280039
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11021,837,809 - 22,064,034 (+)NCBI
Dog10K_Boxer_Tasha1021,778,552 - 22,004,508 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038488368   ⟹   XP_038344296
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11022,306,043 - 22,531,928 (+)NCBI
RefSeq Acc Id: XM_038488369   ⟹   XP_038344297
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11022,297,954 - 22,531,928 (+)NCBI
RefSeq Acc Id: XM_038488370   ⟹   XP_038344298
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11022,306,043 - 22,531,928 (+)NCBI
RefSeq Acc Id: XM_038488371   ⟹   XP_038344299
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11022,306,041 - 22,531,928 (+)NCBI
RefSeq Acc Id: XM_038488372   ⟹   XP_038344300
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11022,306,041 - 22,531,928 (+)NCBI
RefSeq Acc Id: XM_038488373   ⟹   XP_038344301
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11022,317,672 - 22,531,928 (+)NCBI
RefSeq Acc Id: XM_038488374   ⟹   XP_038344302
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11022,325,515 - 22,531,928 (+)NCBI
RefSeq Acc Id: XM_038550276   ⟹   XP_038406204
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01022,800,295 - 23,026,524 (+)NCBI
RefSeq Acc Id: XM_038550277   ⟹   XP_038406205
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01022,792,207 - 23,026,524 (+)NCBI
RefSeq Acc Id: XM_038550278   ⟹   XP_038406206
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01022,800,295 - 23,026,524 (+)NCBI
RefSeq Acc Id: XM_038550279   ⟹   XP_038406207
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01022,800,293 - 23,026,524 (+)NCBI
RefSeq Acc Id: XM_038550280   ⟹   XP_038406208
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01022,800,293 - 23,026,524 (+)NCBI
RefSeq Acc Id: XM_038550281   ⟹   XP_038406209
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01022,811,938 - 23,026,524 (+)NCBI
RefSeq Acc Id: XM_038550282   ⟹   XP_038406210
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01022,819,783 - 23,026,524 (+)NCBI
RefSeq Acc Id: XM_038614258   ⟹   XP_038470186
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01022,626,200 - 22,851,011 (+)NCBI
RefSeq Acc Id: XM_038614259   ⟹   XP_038470187
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01022,618,101 - 22,851,011 (+)NCBI
RefSeq Acc Id: XM_038614260   ⟹   XP_038470188
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01022,626,200 - 22,851,011 (+)NCBI
RefSeq Acc Id: XM_038614261   ⟹   XP_038470189
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01022,626,198 - 22,851,011 (+)NCBI
RefSeq Acc Id: XM_038614262   ⟹   XP_038470190
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01022,626,198 - 22,851,011 (+)NCBI
RefSeq Acc Id: XM_038614263   ⟹   XP_038470191
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01022,638,049 - 22,851,011 (+)NCBI
RefSeq Acc Id: XM_038614264   ⟹   XP_038470192
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01022,645,895 - 22,851,011 (+)NCBI
RefSeq Acc Id: XM_038637259   ⟹   XP_038493187
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1021,778,550 - 22,004,508 (+)NCBI
RefSeq Acc Id: XM_038637270   ⟹   XP_038493198
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1021,798,018 - 22,004,508 (+)NCBI
RefSeq Acc Id: XM_038679597   ⟹   XP_038535525
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01022,586,685 - 22,812,813 (+)NCBI
RefSeq Acc Id: XM_038679598   ⟹   XP_038535526
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01022,578,629 - 22,812,813 (+)NCBI
RefSeq Acc Id: XM_038679599   ⟹   XP_038535527
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01022,586,685 - 22,812,813 (+)NCBI
RefSeq Acc Id: XM_038679600   ⟹   XP_038535528
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01022,586,683 - 22,812,813 (+)NCBI
RefSeq Acc Id: XM_038679601   ⟹   XP_038535529
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01022,586,683 - 22,812,813 (+)NCBI
RefSeq Acc Id: XM_038679602   ⟹   XP_038535530
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01022,598,325 - 22,812,813 (+)NCBI
RefSeq Acc Id: XM_038679603   ⟹   XP_038535531
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01022,606,175 - 22,812,813 (+)NCBI
RefSeq Acc Id: XM_538339   ⟹   XP_538339
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11021,829,783 - 22,064,034 (+)NCBI
Dog10K_Boxer_Tasha1021,770,460 - 22,004,508 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013972769 (Get FASTA)   NCBI Sequence Viewer  
  XP_013972770 (Get FASTA)   NCBI Sequence Viewer  
  XP_022280037 (Get FASTA)   NCBI Sequence Viewer  
  XP_022280039 (Get FASTA)   NCBI Sequence Viewer  
  XP_038344296 (Get FASTA)   NCBI Sequence Viewer  
  XP_038344297 (Get FASTA)   NCBI Sequence Viewer  
  XP_038344298 (Get FASTA)   NCBI Sequence Viewer  
  XP_038344299 (Get FASTA)   NCBI Sequence Viewer  
  XP_038344300 (Get FASTA)   NCBI Sequence Viewer  
  XP_038344301 (Get FASTA)   NCBI Sequence Viewer  
  XP_038344302 (Get FASTA)   NCBI Sequence Viewer  
  XP_038406204 (Get FASTA)   NCBI Sequence Viewer  
  XP_038406205 (Get FASTA)   NCBI Sequence Viewer  
  XP_038406206 (Get FASTA)   NCBI Sequence Viewer  
  XP_038406207 (Get FASTA)   NCBI Sequence Viewer  
  XP_038406208 (Get FASTA)   NCBI Sequence Viewer  
  XP_038406209 (Get FASTA)   NCBI Sequence Viewer  
  XP_038406210 (Get FASTA)   NCBI Sequence Viewer  
  XP_038470186 (Get FASTA)   NCBI Sequence Viewer  
  XP_038470187 (Get FASTA)   NCBI Sequence Viewer  
  XP_038470188 (Get FASTA)   NCBI Sequence Viewer  
  XP_038470189 (Get FASTA)   NCBI Sequence Viewer  
  XP_038470190 (Get FASTA)   NCBI Sequence Viewer  
  XP_038470191 (Get FASTA)   NCBI Sequence Viewer  
  XP_038470192 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493187 (Get FASTA)   NCBI Sequence Viewer  
  XP_038493198 (Get FASTA)   NCBI Sequence Viewer  
  XP_038535525 (Get FASTA)   NCBI Sequence Viewer  
  XP_038535526 (Get FASTA)   NCBI Sequence Viewer  
  XP_038535527 (Get FASTA)   NCBI Sequence Viewer  
  XP_038535528 (Get FASTA)   NCBI Sequence Viewer  
  XP_038535529 (Get FASTA)   NCBI Sequence Viewer  
  XP_038535530 (Get FASTA)   NCBI Sequence Viewer  
  XP_038535531 (Get FASTA)   NCBI Sequence Viewer  
  XP_538339 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000001286.4
  ENSCAFP00000030574.3
  ENSCAFP00000046450.1
  ENSCAFP00000052593.1
  ENSCAFP00000069864.1
  ENSCAFP00000074414.1
  ENSCAFP00030007797.1
  ENSCAFP00030007953.1
  ENSCAFP00030008080.1
  ENSCAFP00030008253.1
  ENSCAFP00030008366.1
  ENSCAFP00030008497.1
  ENSCAFP00030008661.1
  ENSCAFP00030008696.1
  ENSCAFP00040019589.1
  ENSCAFP00040019758.1
  ENSCAFP00040019920.1
  ENSCAFP00040020094.1
  ENSCAFP00040020281.1
  ENSCAFP00040020497.1
  ENSCAFP00040020700.1
  ENSCAFP00845018431
  ENSCAFP00845018431.1
  ENSCAFP00845018566
  ENSCAFP00845018566.1
  ENSCAFP00845018643.1
  ENSCAFP00845018751
  ENSCAFP00845018751.1
  ENSCAFP00845018880.1
  ENSCAFP00845018983.1
  ENSCAFP00845019014.1
  ENSCAFP00845019042
  ENSCAFP00845019042.1
  ENSCAFP00845019060.1
Reference Protein Sequences
RefSeq Acc Id: XP_013972769   ⟸   XM_014117294
- Peptide Label: isoform X3
- UniProtKB: A0A8C0SD26 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_538339   ⟸   XM_538339
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SE44 (UniProtKB/TrEMBL),   A0A8I3NR57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013972770   ⟸   XM_014117295
- Peptide Label: isoform X5
- UniProtKB: A0A8I3NRF6 (UniProtKB/TrEMBL),   A0A8P0TMD9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022280037   ⟸   XM_022424329
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SE44 (UniProtKB/TrEMBL),   A0A8I3NR57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022280039   ⟸   XM_022424331
- Peptide Label: isoform X2
- UniProtKB: A0A8I3NLH5 (UniProtKB/TrEMBL),   A0A8C0SFQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000001286   ⟸   ENSCAFT00000001400
RefSeq Acc Id: ENSCAFP00000030574   ⟸   ENSCAFT00000035329
RefSeq Acc Id: ENSCAFP00000046450   ⟸   ENSCAFT00000060936
RefSeq Acc Id: ENSCAFP00000052593   ⟸   ENSCAFT00000081807
RefSeq Acc Id: ENSCAFP00000063753   ⟸   ENSCAFT00000091001
RefSeq Acc Id: XP_038344297   ⟸   XM_038488369
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038344299   ⟸   XM_038488371
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038344300   ⟸   XM_038488372
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038344296   ⟸   XM_038488368
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038344298   ⟸   XM_038488370
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038344301   ⟸   XM_038488373
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038344302   ⟸   XM_038488374
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038470187   ⟸   XM_038614259
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038470189   ⟸   XM_038614261
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038470190   ⟸   XM_038614262
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038470186   ⟸   XM_038614258
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038470188   ⟸   XM_038614260
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038470191   ⟸   XM_038614263
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038470192   ⟸   XM_038614264
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038535526   ⟸   XM_038679598
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SE44 (UniProtKB/TrEMBL),   A0A8I3NR57 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038535528   ⟸   XM_038679600
- Peptide Label: isoform X3
- UniProtKB: A0A8C0SD26 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038535529   ⟸   XM_038679601
- Peptide Label: isoform X4
- UniProtKB: A0A8C0YWX8 (UniProtKB/TrEMBL),   A0A8I3NFX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038535525   ⟸   XM_038679597
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SE44 (UniProtKB/TrEMBL),   A0A8I3NR57 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038535527   ⟸   XM_038679599
- Peptide Label: isoform X2
- UniProtKB: A0A8I3NLH5 (UniProtKB/TrEMBL),   A0A8C0SFQ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038535530   ⟸   XM_038679602
- Peptide Label: isoform X5
- UniProtKB: A0A8I3NRF6 (UniProtKB/TrEMBL),   A0A8P0TMD9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038535531   ⟸   XM_038679603
- Peptide Label: isoform X5
- UniProtKB: A0A8I3NRF6 (UniProtKB/TrEMBL),   A0A8P0TMD9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038493187   ⟸   XM_038637259
- Peptide Label: isoform X4
- UniProtKB: A0A8C0YWX8 (UniProtKB/TrEMBL),   A0A8I3NFX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038493198   ⟸   XM_038637270
- Peptide Label: isoform X5
- UniProtKB: A0A8I3NRF6 (UniProtKB/TrEMBL),   A0A8P0TMD9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038406205   ⟸   XM_038550277
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SE44 (UniProtKB/TrEMBL),   A0A8I3NR57 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038406207   ⟸   XM_038550279
- Peptide Label: isoform X3
- UniProtKB: A0A8C0M862 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038406208   ⟸   XM_038550280
- Peptide Label: isoform X4
- UniProtKB: A0A8C0MF75 (UniProtKB/TrEMBL),   A0A8C0YWX8 (UniProtKB/TrEMBL),   A0A8I3NFX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038406204   ⟸   XM_038550276
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SE44 (UniProtKB/TrEMBL),   A0A8I3NR57 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038406206   ⟸   XM_038550278
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SFQ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038406209   ⟸   XM_038550281
- Peptide Label: isoform X5
- UniProtKB: A0A8I3NRF6 (UniProtKB/TrEMBL),   A0A8P0TMD9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038406210   ⟸   XM_038550282
- Peptide Label: isoform X5
- UniProtKB: A0A8I3NRF6 (UniProtKB/TrEMBL),   A0A8P0TMD9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845018751   ⟸   ENSCAFT00845023875
RefSeq Acc Id: ENSCAFP00845018880   ⟸   ENSCAFT00845024037
RefSeq Acc Id: ENSCAFP00845018983   ⟸   ENSCAFT00845024170
RefSeq Acc Id: ENSCAFP00845019060   ⟸   ENSCAFT00845024263
RefSeq Acc Id: ENSCAFP00845019014   ⟸   ENSCAFT00845024205
RefSeq Acc Id: ENSCAFP00845019042   ⟸   ENSCAFT00845024237
RefSeq Acc Id: ENSCAFP00845018431   ⟸   ENSCAFT00845023482
RefSeq Acc Id: ENSCAFP00845018643   ⟸   ENSCAFT00845023757
RefSeq Acc Id: ENSCAFP00845018566   ⟸   ENSCAFT00845023651
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000000902 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030004802 UniProtKB/TrEMBL
  ENSCAFG00040012267 UniProtKB/TrEMBL
  ENSCAFG00845013088 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000001400.6 UniProtKB/TrEMBL
  ENSCAFT00000035329.3 UniProtKB/TrEMBL
  ENSCAFT00000060936.2 UniProtKB/TrEMBL
  ENSCAFT00000081807.2 UniProtKB/TrEMBL
  ENSCAFT00000095132.1 UniProtKB/TrEMBL
  ENSCAFT00000097106.1 UniProtKB/TrEMBL
  ENSCAFT00030008874.1 UniProtKB/TrEMBL
  ENSCAFT00030009067.1 UniProtKB/TrEMBL
  ENSCAFT00030009214.1 UniProtKB/TrEMBL
  ENSCAFT00030009427.1 UniProtKB/TrEMBL
  ENSCAFT00030009572.1 UniProtKB/TrEMBL
  ENSCAFT00030009717.1 UniProtKB/TrEMBL
  ENSCAFT00030009894.1 UniProtKB/TrEMBL
  ENSCAFT00030009935.1 UniProtKB/TrEMBL
  ENSCAFT00040022609.1 UniProtKB/TrEMBL
  ENSCAFT00040022805.1 UniProtKB/TrEMBL
  ENSCAFT00040022982.1 UniProtKB/TrEMBL
  ENSCAFT00040023173.1 UniProtKB/TrEMBL
  ENSCAFT00040023374.1 UniProtKB/TrEMBL
  ENSCAFT00040023609.1 UniProtKB/TrEMBL
  ENSCAFT00040023835.1 UniProtKB/TrEMBL
  ENSCAFT00845023482 ENTREZGENE
  ENSCAFT00845023482.1 UniProtKB/TrEMBL
  ENSCAFT00845023651 ENTREZGENE
  ENSCAFT00845023651.1 UniProtKB/TrEMBL
  ENSCAFT00845023757.1 UniProtKB/TrEMBL
  ENSCAFT00845023875 ENTREZGENE
  ENSCAFT00845023875.1 UniProtKB/TrEMBL
  ENSCAFT00845024037.1 UniProtKB/TrEMBL
  ENSCAFT00845024170.1 UniProtKB/TrEMBL
  ENSCAFT00845024205.1 UniProtKB/TrEMBL
  ENSCAFT00845024237 ENTREZGENE
  ENSCAFT00845024237.1 UniProtKB/TrEMBL
  ENSCAFT00845024263.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_DJBP UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
NCBI Gene EFCAB6 ENTREZGENE
PANTHER EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6 UniProtKB/TrEMBL
  EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED UniProtKB/TrEMBL
Pfam EF-hand_11 UniProtKB/TrEMBL
  EF-hand_7 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A8C0M862 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0M8J2_CANLF UniProtKB/TrEMBL
  A0A8C0M9A4_CANLF UniProtKB/TrEMBL
  A0A8C0ME32_CANLF UniProtKB/TrEMBL
  A0A8C0MF75 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0MGA7_CANLF UniProtKB/TrEMBL
  A0A8C0MLD6_CANLF UniProtKB/TrEMBL
  A0A8C0RD29_CANLF UniProtKB/TrEMBL
  A0A8C0SD26 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SE44 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SFQ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SH01_CANLF UniProtKB/TrEMBL
  A0A8C0YWR6_CANLF UniProtKB/TrEMBL
  A0A8C0YWX8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0YX62_CANLF UniProtKB/TrEMBL
  A0A8I3NFM2_CANLF UniProtKB/TrEMBL
  A0A8I3NFX8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NLH5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NM98_CANLF UniProtKB/TrEMBL
  A0A8I3NQ81_CANLF UniProtKB/TrEMBL
  A0A8I3NR57 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NRF6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NT06_CANLF UniProtKB/TrEMBL
  A0A8I3RXM2_CANLF UniProtKB/TrEMBL
  A0A8P0PQE6_CANLF UniProtKB/TrEMBL
  A0A8P0SZG2_CANLF UniProtKB/TrEMBL
  A0A8P0TMD9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:40217 ENTREZGENE