TEKT3 (tektin 3) - Rat Genome Database

Name: TEKT3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: TEKT3 (tektin 3) Canis lupus familiaris

Analyze

Symbol:

TEKT3

Name:

tektin 3

RGD ID:

12154847

Description:

INVOLVED IN regulation of brood size (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Charcot-Marie-Tooth disease type 1 (ortholog); FOUND IN acrosomal membrane (ortholog); axonemal A tubule inner sheath (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tektin-3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TEKT3 (tektin 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tekt3 (tektin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Tekt3 (tektin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tekt3 (tektin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TEKT3 (tektin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tekt3 (tektin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TEKT3 (tektin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TEKT3 (tektin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tekt3 (tektin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	38,872,664 - 38,913,114 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	38,872,665 - 38,912,497 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	39,017,402 - 39,057,841 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	38,980,948 - 39,021,380 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	38,980,949 - 39,020,764 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	38,953,684 - 38,994,125 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	38,899,155 - 38,939,737 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	39,087,301 - 39,127,735 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

autistic disorder (ISO)

Charcot-Marie-Tooth disease type 1 (ISO)

Charcot-Marie-Tooth disease type 1A (ISO)

Charcot-Marie-Tooth disease type 3 (ISO)

hereditary neuropathy with liability to pressure palsies (ISO)

schizophrenia (ISO)

Spermatogenic Failure 81 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cilium assembly (IEA)

cilium movement involved in cell motility (IEA)

flagellated sperm motility (IEA)

regulation of brood size (IEA,ISO)

Cellular Component

acrosomal membrane (ISO)

acrosomal vesicle (IEA)

axonemal A tubule inner sheath (IEA,ISO)

axonemal microtubule (IEA)

cytoplasm (IEA)

cytoplasmic vesicle (IEA)

cytoskeleton (IEA)

membrane (IEA)

microtubule cytoskeleton (IEA)

motile cilium (IEA)

nucleus (IEA)

outer acrosomal membrane (IEA)

sperm flagellum (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

TEKT3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	38,872,664 - 38,913,114 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	38,872,665 - 38,912,497 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	39,017,402 - 39,057,841 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	38,980,948 - 39,021,380 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	38,980,949 - 39,020,764 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	38,953,684 - 38,994,125 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	38,899,155 - 38,939,737 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	39,087,301 - 39,127,735 (-)	NCBI		UU_Cfam_GSD_1.0

TEKT3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	15,303,812 - 15,343,671 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	15,303,811 - 15,341,632 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	15,207,129 - 15,244,914 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	15,147,854 - 15,185,624 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	15,147,855 - 15,185,624	NCBI
Celera	17	15,231,709 - 15,269,545 (-)	NCBI		Celera
Cytogenetic Map	17	p12	NCBI
HuRef	17	15,100,747 - 15,138,585 (-)	NCBI		HuRef
CHM1_1	17	15,215,940 - 15,253,768 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	15,209,840 - 15,249,701 (-)	NCBI		T2T-CHM13v2.0

Tekt3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	62,952,485 - 62,985,786 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	62,952,480 - 62,985,790 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	63,061,659 - 63,094,960 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	63,061,654 - 63,094,964 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	62,875,161 - 62,908,462 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	62,877,854 - 62,911,155 (+)	NCBI		MGSCv36	mm8
Celera	11	69,991,092 - 70,024,440 (+)	NCBI		Celera
Cytogenetic Map	11	B3	NCBI
cM Map	11	38.92	NCBI

Tekt3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	48,228,859 - 48,262,812 (+)	NCBI		GRCr8
mRatBN7.2	10	47,729,635 - 47,763,589 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	47,729,635 - 47,763,588 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	52,432,258 - 52,466,932 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	51,922,782 - 51,957,460 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	47,426,212 - 47,460,886 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	49,472,520 - 49,506,473 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	49,472,460 - 49,506,465 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	49,250,932 - 49,284,885 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	49,239,761 - 49,273,714 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	49,253,383 - 49,287,336 (+)	NCBI
Celera	10	46,971,790 - 47,006,419 (+)	NCBI		Celera
Cytogenetic Map	10	q23	NCBI

Tekt3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955467	2,347,907 - 2,381,431 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955467	2,347,996 - 2,381,346 (+)	NCBI	ChiLan1.0	ChiLan1.0

TEKT3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	58,409,284 - 58,449,988 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	63,215,877 - 63,256,530 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	36,312,646 - 36,351,538 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	40,961,623 - 41,000,108 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	40,961,632 - 41,000,108 (+)	Ensembl	panpan1.1		panPan2

Tekt3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	57,845,646 - 57,950,253 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936724	1,815,562 - 1,843,643 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936724	1,815,562 - 1,843,643 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TEKT3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	58,734,177 - 58,789,493 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	58,734,289 - 58,773,400 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	62,016,542 - 62,047,462 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TEKT3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	14,602,629 - 14,641,304 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	14,602,753 - 14,630,773 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	6,586,666 - 6,615,023 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tekt3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624877	3,367,201 - 3,408,582 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624877	3,367,466 - 3,407,917 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in TEKT3
509 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium										8
Low							1				4	2
Below cutoff	4	5	18	3	5	3	5	3	9		6	4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005620068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022418602	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038475766	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038475767	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038475768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038536949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038536950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038536951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038601092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038601093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038601094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038665663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038665664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038665665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_536649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000028445 ⟹ ENSCAFP00000026455

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	5	38,872,665 - 38,912,497 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845007466 ⟹ ENSCAFP00845005900

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	5	38,980,949 - 39,020,764 (-)	Ensembl

RefSeq Acc Id:

XM_005620068 ⟹ XP_005620125

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	38,872,664 - 38,913,113 (-)	NCBI
Dog10K_Boxer_Tasha	5	39,017,402 - 39,057,841 (-)	NCBI

Sequence:

show sequence

GCGGGGCCGGCGCCGACGGGTCGGGGGCGCAGCCGCGGAGGGCGGTCGGTGGGGTCAGCCACCC
TTCCCGCTCTCCGCCCCTTCCCCGCCCCTCGCCGGCGGCCGCTGACAGACCAAGGCCCTTTATG
TTTCTCCCTGGATGCTTATGATCGTTGTAGATACATACTTTAGAAATGAGTAATATTGGGTCGC
TGTGAATAAAGCAAGTTGTTCCACTCCTAGGCAAAGTGTTTCAAGGAGAGATTTACAATAGTGT
TTGAGCATCATGGATGCTTTAGGTTCTACGTTAACGGCAACTTATGCCCACCCTAGACCAACAC
CAACCAACTTCCTACCAGCCATCAGTACTGTGGCATCAAGCTACAGGGACCGCTTCCCCCACTA
CAATTTAACCCATACCTTGAGCCTTCCTTGGAGACCAAGCACATACTACAAAGTAGCATCCAAC
TTACCAACCTTGGGCCCATACTGCACCAGATCTCAGAAGGTGTGCGAGAGCACCATGCTTCCCT
TTGTTTCTAATAGAACCACTCTCTTCACAAGGTATACTCCTGATGATTGGTACAGGTCCAATTT
AACCAACTATCATGAATCCAACACTTCCCGACATAATTCAGAGAGACTAAGGGTAGATACATCT
CGCCTGATTCAAGACAAATATCAGCAAACAAGAAAAACCCAGGCAGGCTCCACCCAAAATTTGG
GAGAACGAGTCAATGACATAGGATTTTGGAAATCTGAAATCAATCATGAGTTGGATGCGATGAT
TGGAGATACGAATGAACTCACTGATGTTAAGAAAAAATTGGAGAGGGCTTTGATGGAGACAGAA
GCCCCTCTTCAGGTAGCCCGAGAATGTCTATTTCATCGAGAGAAGAGAATGGGGATTGATCTAG
TTCACGATGAAGTGGAAGCTGAACTGCTGACGGAAGTTGATATTATTCTGTGTTGTCAAGAAAG
GATGAAGCTGCATTTGGATAAGGCCATTGCTCAACTTGCAGCTAACAGAGCCTCCCAGCACGAG
CTGGAGAAGGATCTGAGTGATAAACAGGCAGCCTACCGAATCGACGATAAATGCCACAATCTGC
GAAACACGTCAGATGGTGTGAGCTACTTTCGCGGAGTGGAGCTGGTTGATGCAACAGTCTCAGT
GCCTGAGTCCTGGGCCAAATTTACAGATAACAATATTCTCCGTTCCCAAAGTGAACGCGCAGCC
TCTGCCAAGCTAAGAGATGACATTCAAAACCTCTTGGTTGTGACTGCCAATGAGATGTGGAATC
AATTCAACAAAGTGAATGTATCTTTCACCAATCGCATTGCTGAGACTGCAGATGCTAAAAATAA
GATTCAGGTTCACTTAGCGAAGACCCTGCAGGAGATTTTCCAGACTGAAATGACCATAGAATCC
ATCAAGAAGGCCATCAAAGACAAGTCTGCCTTCCTGAAGGTGGCTCAGACCAGACTGGACGAGC
GTACGAGGAGACCCAACATAGAACTCTGCCGGGACATGGCTCAGCTACGTCTTGTTAATGAAGT
GTATGAGGTGGATGACACCATCCAGACCTTGCAGCAGCGCCTGAGGGAAGCGGAGGACACCCTG
CAGTCGCTGGTCCACACCAAAGCCACACTGGAGCATGACCTGGCTGTCAAAGCCAATTCCCTGT
ACATTGACCAGGAAAAATGCATGAGCATGCGCAAGACCTTCCCCAACACCCTCCGGCTGGTGGG
CTTCTGTTAGGGACCCCACCAGGAACTGGAAAAGTGGAACCAAAGCCCTGTGGCAGCAATTTAA
ACTGAGTGCTAATATATTCACTAAATAAAGGATTGTGTTGTTAGAAATGTA

hide sequence

RefSeq Acc Id:

XM_022418602 ⟹ XP_022274310

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	38,872,664 - 38,912,714 (-)	NCBI
Dog10K_Boxer_Tasha	5	39,017,402 - 39,057,435 (-)	NCBI

Sequence:

show sequence

CCCCCGGATCCTGTGCTCACTCCGTGATTTCTTCCACCAGTGAGCAGGGCTTTTGCACGGGGCG
CGGTGTCCGGCCTCATCCGCCGGCTTTTCAAGTGCGGCCAAGGGGAGGGGTTCCAACCAAAGAG
AATTCCTGACATTCCCATCAAGGAGAGATTTACAATAGTGTTTGAGCATCATGGATGCTTTAGG
TTCTACGTTAACGGCAACTTATGCCCACCCTAGACCAACACCAACCAACTTCCTACCAGCCATC
AGTACTGTGGCATCAAGCTACAGGGACCGCTTCCCCCACTACAATTTAACCCATACCTTGAGCC
TTCCTTGGAGACCAAGCACATACTACAAAGTAGCATCCAACTTACCAACCTTGGGCCCATACTG
CACCAGATCTCAGAAGGTGTGCGAGAGCACCATGCTTCCCTTTGTTTCTAATAGAACCACTCTC
TTCACAAGGTATACTCCTGATGATTGGTACAGGTCCAATTTAACCAACTATCATGAATCCAACA
CTTCCCGACATAATTCAGAGAGACTAAGGGTAGATACATCTCGCCTGATTCAAGACAAATATCA
GCAAACAAGAAAAACCCAGGCAGGCTCCACCCAAAATTTGGGAGAACGAGTCAATGACATAGGA
TTTTGGAAATCTGAAATCAATCATGAGTTGGATGCGATGATTGGAGATACGAATGAACTCACTG
ATGTTAAGAAAAAATTGGAGAGGGCTTTGATGGAGACAGAAGCCCCTCTTCAGGTAGCCCGAGA
ATGTCTATTTCATCGAGAGAAGAGAATGGGGATTGATCTAGTTCACGATGAAGTGGAAGCTGAA
CTGCTGACGGAAGTTGATATTATTCTGTGTTGTCAAGAAAGGATGAAGCTGCATTTGGATAAGG
CCATTGCTCAACTTGCAGCTAACAGAGCCTCCCAGCACGAGCTGGAGAAGGATCTGAGTGATAA
ACAGGCAGCCTACCGAATCGACGATAAATGCCACAATCTGCGAAACACGTCAGATGGTGTGAGC
TACTTTCGCGGAGTGGAGCTGGTTGATGCAACAGTCTCAGTGCCTGAGTCCTGGGCCAAATTTA
CAGATAACAATATTCTCCGTTCCCAAAGTGAACGCGCAGCCTCTGCCAAGCTAAGAGATGACAT
TCAAAACCTCTTGGTTGTGACTGCCAATGAGATGTGGAATCAATTCAACAAAGTGAATGTATCT
TTCACCAATCGCATTGCTGAGACTGCAGATGCTAAAAATAAGATTCAGGTTCACTTAGCGAAGA
CCCTGCAGGAGATTTTCCAGACTGAAATGACCATAGAATCCATCAAGAAGGCCATCAAAGACAA
GTCTGCCTTCCTGAAGGTGGCTCAGACCAGACTGGACGAGCGTACGAGGAGACCCAACATAGAA
CTCTGCCGGGACATGGCTCAGCTACGTCTTGTTAATGAAGTGTATGAGGTGGATGACACCATCC
AGACCTTGCAGCAGCGCCTGAGGGAAGCGGAGGACACCCTGCAGTCGCTGGTCCACACCAAAGC
CACACTGGAGCATGACCTGGCTGTCAAAGCCAATTCCCTGTACATTGACCAGGAAAAATGCATG
AGCATGCGCAAGACCTTCCCCAACACCCTCCGGCTGGTGGGCTTCTGTTAGGGACCCCACCAGG
AACTGGAAAAGTGGAACCAAAGCCCTGTGGCAGCAATTTAAACTGAGTGCTAATATATTCACTA
AATAAAGGATTGTGTTGTTAGAAATGTA

hide sequence

RefSeq Acc Id:

XM_038475766 ⟹ XP_038331694

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	5	38,953,684 - 38,994,125 (-)	NCBI

RefSeq Acc Id:

XM_038475767 ⟹ XP_038331695

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	5	38,953,684 - 38,994,124 (-)	NCBI

RefSeq Acc Id:

XM_038475768 ⟹ XP_038331696

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	5	38,953,684 - 38,993,719 (-)	NCBI

RefSeq Acc Id:

XM_038536949 ⟹ XP_038392877

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	5	39,087,301 - 39,127,735 (-)	NCBI

RefSeq Acc Id:

XM_038536950 ⟹ XP_038392878

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	5	39,087,301 - 39,127,734 (-)	NCBI

RefSeq Acc Id:

XM_038536951 ⟹ XP_038392879

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	5	39,087,301 - 39,127,329 (-)	NCBI

RefSeq Acc Id:

XM_038601092 ⟹ XP_038457020

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	5	38,899,155 - 38,939,736 (-)	NCBI

RefSeq Acc Id:

XM_038601093 ⟹ XP_038457021

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	5	38,899,155 - 38,939,737 (-)	NCBI

RefSeq Acc Id:

XM_038601094 ⟹ XP_038457022

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	5	38,899,155 - 38,939,330 (-)	NCBI

RefSeq Acc Id:

XM_038665663 ⟹ XP_038521591

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	5	38,980,948 - 39,021,367 (-)	NCBI

RefSeq Acc Id:

XM_038665664 ⟹ XP_038521592

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	5	38,980,948 - 39,021,380 (-)	NCBI

RefSeq Acc Id:

XM_038665665 ⟹ XP_038521593

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	5	38,980,948 - 39,020,972 (-)	NCBI

RefSeq Acc Id:

XM_536649 ⟹ XP_536649

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	38,872,664 - 38,913,114 (-)	NCBI
Dog10K_Boxer_Tasha	5	39,017,402 - 39,057,840 (-)	NCBI

Sequence:

show sequence

GGCGGGGCCGGCGCCGACGGGTCGGGGGCGCAGCCGCGGAGGGCGGTCGGTGGGGTCAGCCACC
CTTCCCGCTCTCCGCCCCTTCCCCGCCCCTCGCCGGCGGCCGCTGACAGGAGAGATTTACAATA
GTGTTTGAGCATCATGGATGCTTTAGGTTCTACGTTAACGGCAACTTATGCCCACCCTAGACCA
ACACCAACCAACTTCCTACCAGCCATCAGTACTGTGGCATCAAGCTACAGGGACCGCTTCCCCC
ACTACAATTTAACCCATACCTTGAGCCTTCCTTGGAGACCAAGCACATACTACAAAGTAGCATC
CAACTTACCAACCTTGGGCCCATACTGCACCAGATCTCAGAAGGTGTGCGAGAGCACCATGCTT
CCCTTTGTTTCTAATAGAACCACTCTCTTCACAAGGTATACTCCTGATGATTGGTACAGGTCCA
ATTTAACCAACTATCATGAATCCAACACTTCCCGACATAATTCAGAGAGACTAAGGGTAGATAC
ATCTCGCCTGATTCAAGACAAATATCAGCAAACAAGAAAAACCCAGGCAGGCTCCACCCAAAAT
TTGGGAGAACGAGTCAATGACATAGGATTTTGGAAATCTGAAATCAATCATGAGTTGGATGCGA
TGATTGGAGATACGAATGAACTCACTGATGTTAAGAAAAAATTGGAGAGGGCTTTGATGGAGAC
AGAAGCCCCTCTTCAGGTAGCCCGAGAATGTCTATTTCATCGAGAGAAGAGAATGGGGATTGAT
CTAGTTCACGATGAAGTGGAAGCTGAACTGCTGACGGAAGTTGATATTATTCTGTGTTGTCAAG
AAAGGATGAAGCTGCATTTGGATAAGGCCATTGCTCAACTTGCAGCTAACAGAGCCTCCCAGCA
CGAGCTGGAGAAGGATCTGAGTGATAAACAGGCAGCCTACCGAATCGACGATAAATGCCACAAT
CTGCGAAACACGTCAGATGGTGTGAGCTACTTTCGCGGAGTGGAGCTGGTTGATGCAACAGTCT
CAGTGCCTGAGTCCTGGGCCAAATTTACAGATAACAATATTCTCCGTTCCCAAAGTGAACGCGC
AGCCTCTGCCAAGCTAAGAGATGACATTCAAAACCTCTTGGTTGTGACTGCCAATGAGATGTGG
AATCAATTCAACAAAGTGAATGTATCTTTCACCAATCGCATTGCTGAGACTGCAGATGCTAAAA
ATAAGATTCAGGTTCACTTAGCGAAGACCCTGCAGGAGATTTTCCAGACTGAAATGACCATAGA
ATCCATCAAGAAGGCCATCAAAGACAAGTCTGCCTTCCTGAAGGTGGCTCAGACCAGACTGGAC
GAGCGTACGAGGAGACCCAACATAGAACTCTGCCGGGACATGGCTCAGCTACGTCTTGTTAATG
AAGTGTATGAGGTGGATGACACCATCCAGACCTTGCAGCAGCGCCTGAGGGAAGCGGAGGACAC
CCTGCAGTCGCTGGTCCACACCAAAGCCACACTGGAGCATGACCTGGCTGTCAAAGCCAATTCC
CTGTACATTGACCAGGAAAAATGCATGAGCATGCGCAAGACCTTCCCCAACACCCTCCGGCTGG
TGGGCTTCTGTTAGGGACCCCACCAGGAACTGGAAAAGTGGAACCAAAGCCCTGTGGCAGCAAT
TTAAACTGAGTGCTAATATATTCACTAAATAAAGGATTGTGTTGTTAGAAATGTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005620125	(Get FASTA)	NCBI Sequence Viewer
	XP_022274310	(Get FASTA)	NCBI Sequence Viewer
	XP_038331694	(Get FASTA)	NCBI Sequence Viewer
	XP_038331695	(Get FASTA)	NCBI Sequence Viewer
	XP_038331696	(Get FASTA)	NCBI Sequence Viewer
	XP_038392877	(Get FASTA)	NCBI Sequence Viewer
	XP_038392878	(Get FASTA)	NCBI Sequence Viewer
	XP_038392879	(Get FASTA)	NCBI Sequence Viewer
	XP_038457020	(Get FASTA)	NCBI Sequence Viewer
	XP_038457021	(Get FASTA)	NCBI Sequence Viewer
	XP_038457022	(Get FASTA)	NCBI Sequence Viewer
	XP_038521591	(Get FASTA)	NCBI Sequence Viewer
	XP_038521592	(Get FASTA)	NCBI Sequence Viewer
	XP_038521593	(Get FASTA)	NCBI Sequence Viewer
	XP_536649	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000026455.3
	ENSCAFP00030005383.1
	ENSCAFP00040000353.1
	ENSCAFP00845005900
	ENSCAFP00845005900.1

RefSeq Acc Id:

XP_536649 ⟸ XM_536649

- UniProtKB:

A0A8C0PPL5 (UniProtKB/TrEMBL), A0A8P0SM29 (UniProtKB/TrEMBL), A0A8C0M2K3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDALGSTLTATYAHPRPTPTNFLPAISTVASSYRDRFPHYNLTHTLSLPWRPSTYYKVASNLPT
LGPYCTRSQKVCESTMLPFVSNRTTLFTRYTPDDWYRSNLTNYHESNTSRHNSERLRVDTSRLI
QDKYQQTRKTQAGSTQNLGERVNDIGFWKSEINHELDAMIGDTNELTDVKKKLERALMETEAPL
QVARECLFHREKRMGIDLVHDEVEAELLTEVDIILCCQERMKLHLDKAIAQLAANRASQHELEK
DLSDKQAAYRIDDKCHNLRNTSDGVSYFRGVELVDATVSVPESWAKFTDNNILRSQSERAASAK
LRDDIQNLLVVTANEMWNQFNKVNVSFTNRIAETADAKNKIQVHLAKTLQEIFQTEMTIESIKK
AIKDKSAFLKVAQTRLDERTRRPNIELCRDMAQLRLVNEVYEVDDTIQTLQQRLREAEDTLQSL
VHTKATLEHDLAVKANSLYIDQEKCMSMRKTFPNTLRLVGFC

hide sequence

RefSeq Acc Id:

XP_005620125 ⟸ XM_005620068

- UniProtKB:

A0A8C0PPL5 (UniProtKB/TrEMBL), A0A8P0SM29 (UniProtKB/TrEMBL), A0A8C0M2K3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDALGSTLTATYAHPRPTPTNFLPAISTVASSYRDRFPHYNLTHTLSLPWRPSTYYKVASNLPT
LGPYCTRSQKVCESTMLPFVSNRTTLFTRYTPDDWYRSNLTNYHESNTSRHNSERLRVDTSRLI
QDKYQQTRKTQAGSTQNLGERVNDIGFWKSEINHELDAMIGDTNELTDVKKKLERALMETEAPL
QVARECLFHREKRMGIDLVHDEVEAELLTEVDIILCCQERMKLHLDKAIAQLAANRASQHELEK
DLSDKQAAYRIDDKCHNLRNTSDGVSYFRGVELVDATVSVPESWAKFTDNNILRSQSERAASAK
LRDDIQNLLVVTANEMWNQFNKVNVSFTNRIAETADAKNKIQVHLAKTLQEIFQTEMTIESIKK
AIKDKSAFLKVAQTRLDERTRRPNIELCRDMAQLRLVNEVYEVDDTIQTLQQRLREAEDTLQSL
VHTKATLEHDLAVKANSLYIDQEKCMSMRKTFPNTLRLVGFC

hide sequence

RefSeq Acc Id:

XP_022274310 ⟸ XM_022418602

- UniProtKB:

A0A8C0PPL5 (UniProtKB/TrEMBL), A0A8P0SM29 (UniProtKB/TrEMBL), A0A8C0M2K3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDALGSTLTATYAHPRPTPTNFLPAISTVASSYRDRFPHYNLTHTLSLPWRPSTYYKVASNLPT
LGPYCTRSQKVCESTMLPFVSNRTTLFTRYTPDDWYRSNLTNYHESNTSRHNSERLRVDTSRLI
QDKYQQTRKTQAGSTQNLGERVNDIGFWKSEINHELDAMIGDTNELTDVKKKLERALMETEAPL
QVARECLFHREKRMGIDLVHDEVEAELLTEVDIILCCQERMKLHLDKAIAQLAANRASQHELEK
DLSDKQAAYRIDDKCHNLRNTSDGVSYFRGVELVDATVSVPESWAKFTDNNILRSQSERAASAK
LRDDIQNLLVVTANEMWNQFNKVNVSFTNRIAETADAKNKIQVHLAKTLQEIFQTEMTIESIKK
AIKDKSAFLKVAQTRLDERTRRPNIELCRDMAQLRLVNEVYEVDDTIQTLQQRLREAEDTLQSL
VHTKATLEHDLAVKANSLYIDQEKCMSMRKTFPNTLRLVGFC

hide sequence

RefSeq Acc Id:

ENSCAFP00000026455 ⟸ ENSCAFT00000028445

RefSeq Acc Id:

XP_038331694 ⟸ XM_038475766

RefSeq Acc Id:

XP_038331695 ⟸ XM_038475767

RefSeq Acc Id:

XP_038331696 ⟸ XM_038475768

RefSeq Acc Id:

XP_038457021 ⟸ XM_038601093

RefSeq Acc Id:

XP_038457020 ⟸ XM_038601092

RefSeq Acc Id:

XP_038457022 ⟸ XM_038601094

RefSeq Acc Id:	XP_038521592 ⟸ XM_038665664
- UniProtKB:	A0A8C0JH81 (UniProtKB/TrEMBL), A0A8I3MRE3 (UniProtKB/TrEMBL), A0A8C0M2K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038521591 ⟸ XM_038665663
- UniProtKB:	A0A8C0JH81 (UniProtKB/TrEMBL), A0A8I3MRE3 (UniProtKB/TrEMBL), A0A8C0M2K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038521593 ⟸ XM_038665665
- UniProtKB:	A0A8C0JH81 (UniProtKB/TrEMBL), A0A8I3MRE3 (UniProtKB/TrEMBL), A0A8C0M2K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038392877 ⟸ XM_038536949
- UniProtKB:	A0A8C0M2K3 (UniProtKB/TrEMBL), A0A8C0PPL5 (UniProtKB/TrEMBL), A0A8P0SM29 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038392878 ⟸ XM_038536950
- UniProtKB:	A0A8C0M2K3 (UniProtKB/TrEMBL), A0A8C0PPL5 (UniProtKB/TrEMBL), A0A8P0SM29 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038392879 ⟸ XM_038536951
- UniProtKB:	A0A8C0M2K3 (UniProtKB/TrEMBL), A0A8C0PPL5 (UniProtKB/TrEMBL), A0A8P0SM29 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845005900 ⟸ ENSCAFT00845007466

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000017923	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030003273	UniProtKB/TrEMBL
	ENSCAFG00040000259	UniProtKB/TrEMBL
	ENSCAFG00845004170	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000028445.5	UniProtKB/TrEMBL
	ENSCAFT00030006102.1	UniProtKB/TrEMBL
	ENSCAFT00040000434.1	UniProtKB/TrEMBL
	ENSCAFT00845007466	ENTREZGENE
	ENSCAFT00845007466.1	UniProtKB/TrEMBL
InterPro	Tektin	UniProtKB/TrEMBL
	Tektin-like	UniProtKB/TrEMBL
KEGG Report	cfa:479510	UniProtKB/TrEMBL
NCBI Gene	TEKT3	ENTREZGENE
PANTHER	PTHR19960	UniProtKB/TrEMBL
	TEKTIN-3	UniProtKB/TrEMBL
Pfam	Tektin	UniProtKB/TrEMBL
PRINTS	TEKTIN	UniProtKB/TrEMBL
UniProt	A0A8C0JH81	ENTREZGENE
	A0A8C0M2K3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0PPL5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MRE3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0SM29	ENTREZGENE
UniProt Secondary	A0A8P0SM29	UniProtKB/TrEMBL
VGNC ID	VGNC:47243	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM