RILP (Rab interacting lysosomal protein)

Gene: RILP (Rab interacting lysosomal protein) Canis lupus familiaris

Analyze

Symbol:

RILP

Name:

Rab interacting lysosomal protein

RGD ID:

12154141

Description:

ENCODES a protein that exhibits dynein light intermediate chain binding (inferred); protein dimerization activity (inferred); small GTPase binding (inferred); INVOLVED IN cilium assembly (inferred); early endosome to late endosome transport (inferred); endosome to lysosome transport (inferred); FOUND IN ciliary basal body (inferred); cytoplasm (inferred); endosome membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

rab-interacting lysosomal protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	45,793,324 - 45,797,159 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	45,793,623 - 45,796,877 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	44,944,238 - 44,948,070 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	46,620,419 - 46,624,252 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	46,620,423 - 46,624,178 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	45,390,515 - 45,394,347 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	45,685,060 - 45,688,885 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	45,739,495 - 45,743,329 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cilium assembly (IEA)

early endosome to late endosome transport (IEA)

endosome to lysosome transport (IEA)

endosome transport via multivesicular body sorting pathway (IEA)

intralumenal vesicle formation (IEA)

negative regulation of protein catabolic process (IEA)

positive regulation of protein catabolic process (IEA)

protein transport (IEA)

regulation of multivesicular body size (IEA)

Cellular Component

ciliary basal body (IEA)

cytoplasm (IEA)

endosome membrane (IEA)

late endosome (IEA)

lysosome (IEA)

protein-containing complex (IEA)

Molecular Function

dynein light intermediate chain binding (IEA)

protein binding (ISO)

protein dimerization activity (IEA)

small GTPase binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

RILP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	45,793,324 - 45,797,159 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	45,793,623 - 45,796,877 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	44,944,238 - 44,948,070 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	46,620,419 - 46,624,252 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	46,620,423 - 46,624,178 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	45,390,515 - 45,394,347 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	45,685,060 - 45,688,885 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	45,739,495 - 45,743,329 (-)	NCBI		UU_Cfam_GSD_1.0

RILP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	1,646,150 - 1,649,866 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	1,646,145 - 1,649,866 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	1,549,444 - 1,553,160 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	1,496,194 - 1,500,142 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	1,496,199 - 1,500,092	NCBI
Celera	17	1,564,800 - 1,568,748 (-)	NCBI		Celera
Cytogenetic Map	17	p13.3	NCBI
HuRef	17	1,448,818 - 1,452,766 (-)	NCBI		HuRef
CHM1_1	17	1,558,214 - 1,562,162 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	1,534,940 - 1,538,656 (-)	NCBI		T2T-CHM13v2.0

Rilp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	75,400,920 - 75,403,994 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	75,400,920 - 75,403,994 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	75,510,094 - 75,513,168 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	75,510,094 - 75,513,168 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	75,323,596 - 75,326,670 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	75,326,289 - 75,329,363 (+)	NCBI		MGSCv36	mm8
Celera	11	83,018,502 - 83,021,576 (+)	NCBI		Celera
Cytogenetic Map	11	B5	NCBI
cM Map	11	45.92	NCBI

Rilp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	60,853,316 - 60,857,096 (+)	NCBI		GRCr8
mRatBN7.2	10	60,355,276 - 60,358,434 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	60,355,278 - 60,358,781 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	65,002,430 - 65,005,589 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	64,507,858 - 64,511,017 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	59,970,427 - 59,973,586 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	63,658,451 - 63,662,428 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	63,659,085 - 63,662,050 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	64,344,730 - 64,347,888 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	62,831,609 - 62,834,767 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	62,845,263 - 62,848,460 (+)	NCBI
Celera	10	59,383,602 - 59,386,760 (+)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

Rilp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955481	1,531,574 - 1,534,443 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955481	1,531,175 - 1,534,794 (+)	NCBI	ChiLan1.0	ChiLan1.0

RILP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	9,219,280 - 9,222,888 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	11,185,444 - 11,189,085 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	1,631,518 - 1,635,464 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	1,528,354 - 1,532,025 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	1,528,638 - 1,531,757 (-)	Ensembl	panpan1.1		panPan2

Rilp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	44,897,997 - 44,901,561 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936538	7,775,942 - 7,779,365 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936538	7,775,942 - 7,779,563 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RILP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	47,856,934 - 47,860,391 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	47,845,553 - 47,860,429 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	49,742,026 - 49,746,125 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RILP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	1,317,116 - 1,321,481 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	1,317,413 - 1,320,678 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	20,660,616 - 20,664,602 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rilp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624786	4,352,772 - 4,355,613 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624786	4,352,391 - 4,355,905 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in RILP
45 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium		5	15	6	1	6	1	6		8	8	5
Low	5		7		5		5		12		2	1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005624932	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038486617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038486618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038548474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038548475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038612415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038612416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038677690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038677691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_537768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002630169	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005331063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005364761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005399199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005432531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000030483 ⟹ ENSCAFP00000028323

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	9	45,793,623 - 45,796,877 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845025903 ⟹ ENSCAFP00845020419

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	9	46,620,423 - 46,624,178 (-)	Ensembl

RefSeq Acc Id:

XM_005624932 ⟹ XP_005624989

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	45,793,324 - 45,797,156 (-)	NCBI
Dog10K_Boxer_Tasha	9	44,944,238 - 44,948,068 (-)	NCBI

Sequence:

show sequence

AGAGCCGTGAACCTCAACCTCTTGGACGCCTGGCTGGAAGTCGGCAGCCTTGCTTCCTGTGACC
TTGGGGCTCAAACAGGACAGAGCCCAGGGGGCCCAGTGCACAACCGCCTTCAAGCCTTTACCTT
TTTTCTTCATTGCTCCTCCTCTGTCGCTTCTTCCCCGCCCCCCACTGCCCGAAACTGCTTCCTG
GGCCGGAACTGTTTGGCTTTTTCCTGCCCCAATTAGGGCTGTGGGTGGGGGTAGGGAGGTTGGC
GTGGCCTTTAACTTTCTGGGGACATGGAGCCCAGGAAGGCGGTACCTGGGGTGCACAGCTGCGG
GCCTCGGGTGGCCGCGGGGTCAGGGACGGCGGCGGAGCTCGTGTACCATCTAGCGGGGGCCCTG
GGCACGGAGCTGAAGGAGCTGGCGCGCCGCTTCGGGCCGGAGGCGGCGGCCGGGCTGGTGCCGC
TGGTGGTGCGGGCGCTGGAGCTCCTGGAAAAGGCCGCCGTAGGGCCGGACCCAGACTCACTGCA
GGTGTCAGCGCAGCAGGCCGAAGTGGAGCTGCGGCGGCTGCGGGAGGAGAACGAGCGCCTCCGC
AGAGAGCTGCGCTCCGGCCCACAGGAGGAGCGGGCTCTCCTGAGGCAGCTCAAGGAGGTGACCG
ACCGCCAGCGGGACGAGCTCCGGGCGCACAACCGAGATCTGCTCCAACGCAGCCAGGAGACCGA
GGCGCTGCAGGAGCAGCTGCAGCGCCTCCTGCTGGTGAACGCGGAGCTGCGCCACAAGCTGGCA
GCGGTGCAGACCCAGCTGCGCTCCGCGAGGGACCGCGAGGGAGAGCGGGAGCTACCGCACCAGG
GGGCGGTGGAGCCGGCGCGGGACCGTGCCGGGGGGGCCGGGGACGCACAGAGGCGGAGGTCCGA
GCGGGCAACCGCCGACGCTGGAGCTCCGGGGACCCCTGAGGACCAGGCGGCTGCCCTGCAGCAG
CCAGGGCGCCCTTCCGAGGCAGGACAGTGCAGCTTCAGTCGAGAGGAGCTCGAGCAGATCCTTC
AGGAGCGGAATGAGCTCAAAGCCAACGTGTTCCTGCTGAAGGAGGAGTTGGCCTACTTCCAGCG
GGAGCTACTCACAGATCACCGGGTCCCTGGGCTTCTCCTTGAAGCCATGAAGGTGGCTGTCAAG
AAGCAGCGGAAGAAGATCAAGGCCAAGATGTTAGGGATCCCAGAGGAAGCAGAGAGCAGCTTTG
GCCTGTCCTATCAGGGTGAAACAGAGGCCCCTGAAGCCCAGACCAGCACGGTGCCCAGTGAGCT
AAGGGGAGAAGAGGAGGCTCTACAGGAACTCCATATGCGGCCTGTGGGCAGCTCTACAGTCCTC
AATTCCTGACTGGCTCTGCTCTGCACTTGATGAACAGCTTTCTCTGGGGGTCTCAGCAGCCCCA
GAGACCTGACTTTGGAATCTGGCTATGGGTGGATGTGTGGCCTCAAATGAAGACAGGGCTCCTT
CCTTCTCAGCCTTCCCCAGGCTCTTTCCCAGTTCTGGCCTGAGCCAGGGCATGATGAAGAGCTC
AGCCTTCCCTGTATCTCTGTGCCAAGCCTCAGGGGCCAGATAAAAGTGCTTCCTCTTGGAATCT
CAGTTTTCTTATCCATAAAATAGAGCTACCTACCTCCCAAGGGTGTGTGAGCATGACCTGAGCT
AATATAATAAAGTAGCTGCCCATGATACCCAGAAA

hide sequence

RefSeq Acc Id:

XM_038486617 ⟹ XP_038342545

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	45,390,515 - 45,394,338 (-)	NCBI

RefSeq Acc Id:

XM_038486618 ⟹ XP_038342546

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	45,390,515 - 45,394,345 (-)	NCBI

RefSeq Acc Id:

XM_038548474 ⟹ XP_038404402

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	45,739,495 - 45,743,320 (-)	NCBI

RefSeq Acc Id:

XM_038548475 ⟹ XP_038404403

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	45,739,495 - 45,743,327 (-)	NCBI

RefSeq Acc Id:

XM_038612415 ⟹ XP_038468343

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	45,685,060 - 45,688,876 (-)	NCBI

RefSeq Acc Id:

XM_038612416 ⟹ XP_038468344

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	45,685,060 - 45,688,883 (-)	NCBI

RefSeq Acc Id:

XM_038677690 ⟹ XP_038533618

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	46,620,419 - 46,624,243 (-)	NCBI

RefSeq Acc Id:

XM_038677691 ⟹ XP_038533619

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	46,620,419 - 46,624,250 (-)	NCBI

RefSeq Acc Id:

XM_537768 ⟹ XP_537768

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	45,793,324 - 45,797,147 (-)	NCBI
Dog10K_Boxer_Tasha	9	44,944,238 - 44,948,061 (-)	NCBI

Sequence:

show sequence

AACCTCAACCTCTTGGACGCCTGGCTGGAAGTCGGCAGCCTTGCTTCCTGTGACCTTGGGGCTC
AAACAGGACAGAGCCCAGGGGGCCCAGTGCACAACCGCCTTCAAGCCTTTACCTTTTTTCTTCA
TTGCTCCTCCTCTGTCGCTTCTTCCCCGCCCCCCACTGCCCGAAACTGCTTCCTGGGCCGGAAC
TGTTTGGCTTTTTCCTGCCCCAATTAGGGCTGTGGGTGGGGGTAGGGAGGTTGGCGTGGCCTTT
AACTTTCTGGGGACATGGAGCCCAGGAAGGCGGTACCTGGGGTGCACAGCTGCGGGCCTCGGGT
GGCCGCGGGGTCAGGGACGGCGGCGGAGCTCGTGTACCATCTAGCGGGGGCCCTGGGCACGGAG
CTGAAGGAGCTGGCGCGCCGCTTCGGGCCGGAGGCGGCGGCCGGGCTGGTGCCGCTGGTGGTGC
GGGCGCTGGAGCTCCTGGAAAAGGCCGCCGTAGGGCCGGACCCAGACTCACTGCAGGTGTCAGC
GCAGCAGGCCGAAGTGGAGCTGCGGCGGCTGCGGGAGGAGAACGAGCGCCTCCGCAGAGAGCTG
CGCTCCGGCCCACAGGAGGAGCGGGCTCTCCTGAGGCAGCTCAAGGAGGTGACCGACCGCCAGC
GGGACGAGCTCCGGGCGCACAACCGAGATCTGCTCCAACGCAGCCAGGAGACCGAGGCGCTGCA
GGAGCAGCTGCAGCGCCTCCTGCTGGTGAACGCGGAGCTGCGCCACAAGCTGGCAGCGGTGCAG
ACCCAGCTGCGCTCCGCGAGGGACCGCGAGGGAGAGCGGGAGCTACCGCACCAGGGGGCGGTGG
AGCCGGCGCGGGACCGTGCCGGGGGGGCCGGGGACGCACAGAGGCGGAGGTCCGAGCGGGCAAC
CGCCGACGCTGGAGCTCCGGGGACCCCTGAGGACCAGGCGGCTGCCCTGCAGCAGCCAGGGCGC
CCTTCCGAGGCAGGACAGTGCAGCTTCAGTCGAGAGGAGCTCGAGCAGATCCTTCAGGAGCGGA
ATGAGCTCAAAGCCAACGTGTTCCTGCTGAAGGAGGAGTTGGCCTACTTCCAGCGGGAGCTACT
CACAGATCACCGGGTCCCTGGGCTTCTCCTTGAAGCCATGAAGGTGGCTGTCAAGAAGCAGCGG
AAGAAGATCAAGGCCAAGATGTTAGGGATCCCAGAGGAAGCAGAGAGCAGTGAAGATGAAGACA
GCTCATGGCTCCTGCCGTCTGGCAATAAGGGGGCCCACCCTCCACCCACTGAATCCAGAATCCA
GCGTTTCTTTGGCCTGTCCTATCAGGGTGAAACAGAGGCCCCTGAAGCCCAGACCAGCACGGTG
CCCAGTGAGCTAAGGGGAGAAGAGGAGGCTCTACAGGAACTCCATATGCGGCCTGTGGGCAGCT
CTACAGTCCTCAATTCCTGACTGGCTCTGCTCTGCACTTGATGAACAGCTTTCTCTGGGGGTCT
CAGCAGCCCCAGAGACCTGACTTTGGAATCTGGCTATGGGTGGATGTGTGGCCTCAAATGAAGA
CAGGGCTCCTTCCTTCTCAGCCTTCCCCAGGCTCTTTCCCAGTTCTGGCCTGAGCCAGGGCATG
ATGAAGAGCTCAGCCTTCCCTGTATCTCTGTGCCAAGCCTCAGGGGCCAGATAAAAGTGCTTCC
TCTTGGAATCTCAGTTTTCTTATCCATAAAATAGAGCTACCTACCTCCCAAGGGTGTGTGAGCA
TGACCTGAGCTAATATAATAAAGTAGCTGCCCATGATACCCAGAAA

hide sequence

RefSeq Acc Id:

XR_002630169

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	45,793,324 - 45,797,159 (-)	NCBI
Dog10K_Boxer_Tasha	9	44,944,238 - 44,948,070 (-)	NCBI

Sequence:

show sequence

CTTAGAGCCGTGAACCTCAACCTCTTGGACGCCTGGCTGGAAGTCGGCAGCCTTGCTTCCTGTG
ACCTTGGGGCTCAAACAGGACAGAGCCCAGGGGGCCCAGTGCACAACCGCCTTCAAGCCTTTAC
CTTTTTTCTTCATTGCTCCTCCTCTGTCGCTTCTTCCCCGCCCCCCACTGCCCGAAACTGCTTC
CTGGGCCGGAACTGTTTGGCTTTTTCCTGCCCCAATTAGGGCTGTGGGTGGGGGTAGGGAGGTT
GGCGTGGCCTTTAACTTTCTGGGGACATGGAGCCCAGGAAGGCGGTACCTGGGGTGCACAGCTG
CGGGCCTCGGGTGGCCGCGGGGTCAGGGACGGCGGCGGAGCTCGTGTACCATCTAGCGGGGGCC
CTGGGCACGGAGCTGAAGGAGCTGGCGCGCCGCTTCGGGCCGGAGGCGGCGGCCGGGCTGGTGC
CGCTGGTGGTGCGGGCGCTGGAGCTCCTGGAAAAGGCCGCCGTAGGGCCGGACCCAGACTCACT
GCAGGTGTCAGCGCAGCAGGCCGAAGTGGAGCTGCGGCGGCTGCGGGAGGAGAACGAGCGCCTC
CGCAGAGAGCTGCGCTCCGGCCCACAGGAGGAGCGGGCTCTCCTGAGGCAGCTCAAGGAGGTGA
CCGACCGCCAGCGGGACGAGCTCCGGGCGCACAACCGAGATCTGCTCCAACGCAGCCAGGAGAC
CGAGGCGCTGCAGGAGCAGCTGCAGCGCCTCCTGCTGGTGAACGCGGAGCTGCGCCACAAGCTG
GCAGCGGTGCAGACCCAGCTGCGCTCCGCGAGGGACCGCGAGGGAGAGCGGGAGCTACCGCACC
AGGGGGCGGTGGAGCCGGCGCGGGACCGTGCCGGGGGGGCCGGGGACGCACAGAGGCGGAGGTC
CGAGCGGGCAACCGCCGACGCTGGAGCTCCGGGGACCCCTGAGGACCAGGCGGCTGCCCTGCAG
CAGCCAGGGCGCCCTTCCGAGGCAGGACAGTGCAGCTTCAGTCGAGAGGAGCTCGAGCAGATCC
TTCAGGAGCGGAATGAGCTCAAAGCCAACGTGTTCCTGCTGAAGGAGGAGTTGGCCTACTTCCA
GCGGGAGCTACTCACAGATCACCGGGTCCCTGGGCTTCTCCTTGAAGCCATGAAGGTGGCTGTC
AAGAAGCAGCGGAAGAAGATCAAGGCCAAGATGTTAGGGATCCCAGAGGAAGCAGAGAGCAGGG
CCTTGATGAACAATCCCCACATCTCCTCTCTTCTCTTCTCTTCTCTGCCTCAGTGAAGATGAAG
ACAGCTCATGGCTCCTGCCGTCTGGCAATAAGGGGGCCCACCCTCCACCCACTGAATCCAGAAT
CCAGCGTTTCTTTGGCCTGTCCTATCAGGGTGAAACAGAGGCCCCTGAAGCCCAGACCAGCACG
GTGCCCAGTGAGCTAAGGGGAGAAGAGGAGGCTCTACAGGAACTCCATATGCGGCCTGTGGGCA
GCTCTACAGTCCTCAATTCCTGACTGGCTCTGCTCTGCACTTGATGAACAGCTTTCTCTGGGGG
TCTCAGCAGCCCCAGAGACCTGACTTTGGAATCTGGCTATGGGTGGATGTGTGGCCTCAAATGA
AGACAGGGCTCCTTCCTTCTCAGCCTTCCCCAGGCTCTTTCCCAGTTCTGGCCTGAGCCAGGGC
ATGATGAAGAGCTCAGCCTTCCCTGTATCTCTGTGCCAAGCCTCAGGGGCCAGATAAAAGTGCT
TCCTCTTGGAATCTCAGTTTTCTTATCCATAAAATAGAGCTACCTACCTCCCAAGGGTGTGTGA
GCATGACCTGAGCTAATATAATAAAGTAGCTGCCCATGATACCCAGAAA

hide sequence

RefSeq Acc Id:

XR_005331063

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	45,390,515 - 45,394,347 (-)	NCBI

RefSeq Acc Id:

XR_005364761

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	45,739,495 - 45,743,329 (-)	NCBI

RefSeq Acc Id:

XR_005399199

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	45,685,060 - 45,688,885 (-)	NCBI

RefSeq Acc Id:

XR_005432531

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	46,620,419 - 46,624,252 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005624989	(Get FASTA)	NCBI Sequence Viewer
	XP_038342545	(Get FASTA)	NCBI Sequence Viewer
	XP_038342546	(Get FASTA)	NCBI Sequence Viewer
	XP_038404402	(Get FASTA)	NCBI Sequence Viewer
	XP_038404403	(Get FASTA)	NCBI Sequence Viewer
	XP_038468343	(Get FASTA)	NCBI Sequence Viewer
	XP_038468344	(Get FASTA)	NCBI Sequence Viewer
	XP_038533618	(Get FASTA)	NCBI Sequence Viewer
	XP_038533619	(Get FASTA)	NCBI Sequence Viewer
	XP_537768	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000028323.4
	ENSCAFP00030024956.1
	ENSCAFP00040004313.1
	ENSCAFP00845020419
	ENSCAFP00845020419.1

RefSeq Acc Id:	XP_005624989 ⟸ XM_005624932
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0RKY5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEPRKAVPGVHSCGPRVAAGSGTAAELVYHLAGALGTELKELARRFGPEAAAGLVPLVVRALEL LEKAAVGPDPDSLQVSAQQAEVELRRLREENERLRRELRSGPQEERALLRQLKEVTDRQRDELR AHNRDLLQRSQETEALQEQLQRLLLVNAELRHKLAAVQTQLRSARDREGERELPHQGAVEPARD RAGGAGDAQRRRSERATADAGAPGTPEDQAAALQQPGRPSEAGQCSFSREELEQILQERNELKA NVFLLKEELAYFQRELLTDHRVPGLLLEAMKVAVKKQRKKIKAKMLGIPEEAESSFGLSYQGET EAPEAQTSTVPSELRGEEEALQELHMRPVGSSTVLNS hide sequence

RefSeq Acc Id:	XP_537768 ⟸ XM_537768
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KB87 (UniProtKB/TrEMBL), A0A8I3NTV2 (UniProtKB/TrEMBL), A0A8P0NKC5 (UniProtKB/TrEMBL), A0A8C0RKY5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEPRKAVPGVHSCGPRVAAGSGTAAELVYHLAGALGTELKELARRFGPEAAAGLVPLVVRALEL LEKAAVGPDPDSLQVSAQQAEVELRRLREENERLRRELRSGPQEERALLRQLKEVTDRQRDELR AHNRDLLQRSQETEALQEQLQRLLLVNAELRHKLAAVQTQLRSARDREGERELPHQGAVEPARD RAGGAGDAQRRRSERATADAGAPGTPEDQAAALQQPGRPSEAGQCSFSREELEQILQERNELKA NVFLLKEELAYFQRELLTDHRVPGLLLEAMKVAVKKQRKKIKAKMLGIPEEAESSEDEDSSWLL PSGNKGAHPPPTESRIQRFFGLSYQGETEAPEAQTSTVPSELRGEEEALQELHMRPVGSSTVLN S hide sequence

RefSeq Acc Id:

ENSCAFP00000028323 ⟸ ENSCAFT00000030483

RefSeq Acc Id:	XP_038342546 ⟸ XM_038486618
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038342545 ⟸ XM_038486617
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038468344 ⟸ XM_038612416
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038468343 ⟸ XM_038612415
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038533619 ⟸ XM_038677691
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0RKY5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038533618 ⟸ XM_038677690
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KB87 (UniProtKB/TrEMBL), A0A8I3NTV2 (UniProtKB/TrEMBL), A0A8P0NKC5 (UniProtKB/TrEMBL), A0A8C0RKY5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038404403 ⟸ XM_038548475
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0RKY5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038404402 ⟸ XM_038548474
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KB87 (UniProtKB/TrEMBL), A0A8C0RKY5 (UniProtKB/TrEMBL), A0A8I3NTV2 (UniProtKB/TrEMBL), A0A8P0NKC5 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845020419 ⟸ ENSCAFT00845025903

Protein Domains

RH1 RH2

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000019203	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030015278	UniProtKB/TrEMBL
	ENSCAFG00040002634	UniProtKB/TrEMBL
	ENSCAFG00845014481	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000030483.5	UniProtKB/TrEMBL
	ENSCAFT00030028616.1	UniProtKB/TrEMBL
	ENSCAFT00040005019.1	UniProtKB/TrEMBL
	ENSCAFT00845025903	ENTREZGENE
	ENSCAFT00845025903.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.58.1770	UniProtKB/TrEMBL
	6.10.230.10	UniProtKB/TrEMBL
InterPro	JNK/Rab-associated_protein-1_N	UniProtKB/TrEMBL
	RH1	UniProtKB/TrEMBL
	RH2	UniProtKB/TrEMBL
	RILP_dimer	UniProtKB/TrEMBL
NCBI Gene	RILP	ENTREZGENE
PANTHER	RAB-INTERACTING LYSOSOMAL PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN DZIP1	UniProtKB/TrEMBL
Pfam	Jnk-SapK_ap_N	UniProtKB/TrEMBL
	RILP	UniProtKB/TrEMBL
PROSITE	RH1	UniProtKB/TrEMBL
	RH2	UniProtKB/TrEMBL
Superfamily-SCOP	RILP dimerisation region	UniProtKB/TrEMBL
UniProt	A0A8C0KB87	ENTREZGENE
	A0A8C0RKY5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NTV2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0NKC5	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:45576	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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