LOC478037 (protocadherin alpha-6) - Rat Genome Database

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Gene: LOC478037 (protocadherin alpha-6) Canis lupus familiaris
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Symbol: LOC478037
Name: protocadherin alpha-6
RGD ID: 12140714
Description: ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog)
Type: protein-coding
Previously known as: PCDHA5; protocadherin alpha 5; protocadherin alpha-10; protocadherin alpha-11; protocadherin alpha-12; protocadherin alpha-13; protocadherin alpha-4; protocadherin alpha-5; protocadherin alpha-7; protocadherin alpha-C2
RGD Orthologs
Human
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,943,781 - 36,062,929 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC478037
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,943,781 - 36,062,929 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
PCDHA8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,841,187 - 141,012,347 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,841,187 - 141,012,347 (+)EnsemblGRCh38hg38GRCh38
GRCh375140,220,772 - 140,391,932 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365140,201,091 - 140,372,113 (+)NCBINCBI36Build 36hg18NCBI36
Build 345140,201,090 - 140,203,535NCBI
Celera5136,297,714 - 136,468,708 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5135,365,644 - 135,536,628 (+)NCBIHuRef
CHM1_15139,654,096 - 139,825,092 (+)NCBICHM1_1
T2T-CHM13v2.05141,366,514 - 141,537,634 (+)NCBIT2T-CHM13v2.0
Pcdhac2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1828,581,225 - 28,846,211 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01830,172,740 - 30,215,896 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,987,206 - 30,215,897 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01829,881,386 - 29,924,443 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41829,884,685 - 29,928,030 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11829,911,330 - 29,954,676 (+)NCBI
Celera1828,509,807 - 28,552,754 (+)NCBICelera
Cytogenetic Map18p11NCBI

Variants

.
Variants in LOC478037
1257 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022408642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_022408642   ⟹   XP_022264350
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1235,943,781 - 36,062,929 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
NCBI Gene PCDHA5 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-09-12 LOC478037  protocadherin alpha-6  PCDHA5  protocadherin alpha 5  Symbol and/or name change 5135510 APPROVED