SDF4 (stromal cell derived factor 4)

Gene: SDF4 (stromal cell derived factor 4) Canis lupus familiaris

Analyze

Symbol:

SDF4

Name:

stromal cell derived factor 4

RGD ID:

12132488

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cerebellum development (ortholog); maintenance of synapse structure (ortholog); response to ethanol (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); congenital myasthenic syndrome 8 (ortholog); dilated cardiomyopathy 1LL (ortholog); FOUND IN cytoplasm (ortholog); plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

45 kDa calcium-binding protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	56,407,506 - 56,421,515 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	56,407,807 - 56,421,430 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	56,484,483 - 56,498,492 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	56,610,405 - 56,624,414 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	56,610,409 - 56,624,362 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	56,601,139 - 56,615,150 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	56,493,416 - 56,507,429 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	56,883,417 - 56,897,430 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 1p36 deletion syndrome (ISO)

congenital myasthenic syndrome 8 (ISO)

dilated cardiomyopathy 1LL (ISO)

Ehlers-Danlos syndrome spondylodysplastic type 2 (ISO)

Goldberg-Shprintzen syndrome (ISO)

immunodeficiency 16 (ISO)

immunodeficiency 38 (ISO)

Joubert syndrome 25 (ISO)

Neurodevelopmental Disorders (ISO)

Peroxisome Biogenesis Disorder, Complementation Group 7 (ISO)

schizophrenia (ISO)

Shprintzen-Goldberg Craniosynostosis (ISO)

spondyloepimetaphyseal dysplasia with joint laxity type 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium-ion regulated exocytosis (IEA)

cerebellum development (ISO)

fat cell differentiation (IEA)

maintenance of synapse structure (ISO)

response to ethanol (ISO)

UV protection (ISO)

zymogen granule exocytosis (ISO)

Cellular Component

cytoplasm (ISO)

endoplasmic reticulum (IEA)

Golgi apparatus (IEA)

Golgi lumen (IEA)

late endosome (IEA)

plasma membrane (ISO)

Molecular Function

calcium ion binding (IEA)

identical protein binding (ISO)

metal ion binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:17442889	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

SDF4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	56,407,506 - 56,421,515 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	56,407,807 - 56,421,430 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	56,484,483 - 56,498,492 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	56,610,405 - 56,624,414 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	56,610,409 - 56,624,362 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	56,601,139 - 56,615,150 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	56,493,416 - 56,507,429 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	56,883,417 - 56,897,430 (-)	NCBI		UU_Cfam_GSD_1.0

SDF4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	1,216,931 - 1,232,001 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	1,216,931 - 1,232,031 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	1,152,311 - 1,167,381 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	1,142,151 - 1,157,274 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	1,192,234 - 1,207,334	NCBI
Celera	1	1,416,207 - 1,431,366 (+)	NCBI		Celera
Cytogenetic Map	1	p36.33	NCBI
HuRef	1	423,986 - 439,143 (-)	NCBI		HuRef
CHM1_1	1	1,138,762 - 1,153,919 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	645,388 - 660,462 (-)	NCBI		T2T-CHM13v2.0

Sdf4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	156,077,300 - 156,098,067 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	156,077,329 - 156,098,067 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	155,992,843 - 156,013,610 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	155,992,872 - 156,013,610 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	155,367,023 - 155,387,719 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	154,836,714 - 154,857,410 (+)	NCBI		MGSCv36	mm8
Celera	4	158,256,076 - 158,276,364 (+)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI
cM Map	4	87.66	NCBI

Sdf4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	171,868,591 - 171,885,827 (+)	NCBI		GRCr8
mRatBN7.2	5	166,586,581 - 166,606,661 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	166,586,390 - 166,604,521 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	169,290,258 - 169,307,133 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	171,111,682 - 171,128,555 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	171,074,216 - 171,091,087 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	173,425,922 - 173,444,478 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	173,425,907 - 173,444,620 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	176,901,543 - 176,918,497 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	172,836,094 - 172,853,044 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	172,850,036 - 172,863,284 (+)	NCBI
Celera	5	164,787,377 - 164,804,459 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Sdf4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955486	9,555,364 - 9,567,340 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955486	9,555,773 - 9,565,310 (+)	NCBI	ChiLan1.0	ChiLan1.0

SDF4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	226,993,607 - 227,009,286 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	225,690,329 - 225,705,966 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	1	1,173,925 - 1,190,390 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

Sdf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	27,567,647 - 27,576,851 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936737	1,891,415 - 1,898,904 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936737	1,889,123 - 1,898,303 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SDF4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	63,529,853 - 63,544,944 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	63,529,853 - 63,539,979 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	57,999,040 - 58,008,413 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SDF4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	130,212,962 - 130,228,831 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	130,216,225 - 130,228,962 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	34,781,559 - 34,797,557 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sdf4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624818	8,365,359 - 8,371,386 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624818	8,362,107 - 8,371,565 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SDF4
121 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	5	5	22	6	6	6	6	6	12	8	10	6
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005620370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005620372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022418890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038476427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038476428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038476429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038476430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038537574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038537575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038537576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038537577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038601732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038601733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038601734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038601735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038666301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038666302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038666303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038666304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_536712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000037918 ⟹ ENSCAFP00000033564

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	5	56,407,807 - 56,421,430 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845040597 ⟹ ENSCAFP00845031777

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	5	56,610,409 - 56,624,362 (-)	Ensembl

RefSeq Acc Id:

XM_005620370 ⟹ XP_005620427

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	56,407,506 - 56,421,492 (-)	NCBI
Dog10K_Boxer_Tasha	5	56,484,483 - 56,498,484 (-)	NCBI

Sequence:

show sequence

GTAGTGCCCACGCGCGCCGTTCTTGGTCCGCCTCTTCCCGGAAGAAAGATGGCCGCGGCCTAGG
CGAGTCCGGTTAGAGGCGTCACGGGCGCTCGAGTCCCGCTCGGTGGCTCCTGAGCGAGGGAAGG
GAGGTCGCGACGGCTGCCTCCGGGAAACAAGCTGACGATGACCGGTCGGCAAGGGAGCCGGGGG
GACCCCGGTGTTTACCGGCCAGGCGACCTCGCTGCCCTAACTGGTGGGACTTGGTGAAGATTTG
AAATTGTGCGTGTGAAGACCCTGGCTTCCGGGTCGGCCAGTGTCAGTTGTTACCGACCTTCTCT
ACGCGACTCCCGAGACCTGTGACGGGGCGTTTAGCTCCTGGCCGCACTTGCAGGCCATCTCACA
GTCCGGACCTGGGTGGCCATGGCATTCAGGCAGGCTCCCCTCTGCGGCCTGGCTCCTCACTGCC
TATGGCTCTTGGGGGTCATCCTTTTGATGGATGTGTCTGCCCGGCCTGCCAACCACTCATCTGC
TCGGGAGAGAGCAGGCACCAAGGACGAGCCTGAGATCCTACCCCCGGATCACCTGAATGGGGTG
AAGCTGGAGATGGATGGACACCTCAACAAGGACTTCCACCAGGAGGTCTTCCTGGGGAAGGACA
TGGACGGGTTTGAGGAGGATGCAGAGCCACGGAGGAGCAGGCGGAAGCTGATGGTTATCTTTTC
TAAGGTTGATGTGAATACTGACCGGAAGATAAGCGCCAAGGAGATGCAGCACTGGATCATGGAG
AAAACTGCAGAGCACTTCCAGGAGGCCATCGAGGAGAGCAAGGTGCACTTCCACGCTGTGGACC
CCGATGGCGATGGGCATGTGTCATGGGACGAGTATAAGGTGAAGTTTTTGGTGAGCAAAGGCCA
CAATGAACGAGAAATTGCGGAGAAGATAAAGAATGGGGAGGAGCTGAAAGTCGACGAGGAGACA
CAGGAAGTCCTAGAGAACCTGAAGGATCGCTGGTATCAGGCGGACAACCCCCCTTCAGACCTGC
TTCTGACGGAGGATGAATTCCTGTCATTTCTGCACCCTGAGCACAGCCGTGGCATGCTCAAGTT
CATGGTCAAAGAGATTGTCCGGGACCTGGACCAGGACGGTGACAAGCAGCTCTCACTGCCTGAG
TTCATCTCTCTGCCCGTGGGCACAGTAGAGAATCAGCAGGGCCAGGACATTGATGACAGTTGGG
TCAGAGACCGAAAAAAAGAGTTTGAGGAATTGATTGACGCCAACCATGACGGGATCGTGACCAT
GGCGGAACTGGAGGACTACATGGACCCCATGAACGAGTATAATGCCCTAAACGAGGCCAAGCAG
ATGATCGCCATCGCCGATGAGAACCAGAACCACCACCTAGAGCCTGAGGAGGTCCTCAAGTACA
GCGAGTTCTTCACAGGCAGCAAACTGATGGACTATGCCCGGAATGTGCACGAGGAGTTCTGAGC
CCACCCCACCTGCCACCTGCCCTGCACACCTCGGCCCCCTGGTGCCTCCTAAAAGCCCCCCTTC
CTGTGGCCCCGACAGCTGTGGCTCCAGGCTTACTGAAGATGTGCTTGAACGGGCCCAAATCCCC
GAGGTGCAGTTGTGGGCTGGCCACCCTCCATGCATGGAGTCCCACAGGACTGTGCAGGTCACTT
CTGAGAACTGACTGCATCAAGGCGCTGCAGCCTCACCATATCTGTGGGGAGTAACGCAGTTCCT
GCCGTTTCCTTGAAGACCAAGAAGTGATCATAGTATTAGAATGAGCTCTGCTGAGAGCTCTTGG
CCGGCCTCTGGGGGGTGCCTGCCCCTTCCCGGGGTGCTGGGGAGGGGCCGCCACAATGTTTAGT
CTCCGAAAACACAAACGCTTGTGACGAGAATCTCATTAATGTACTTTAAATTACAGTTGCTTTT
TTCTCCTAGCTTCATTTTTTTGTTGAAAAAAAAAATCCCATAAAATGATTTTGAATGTT

hide sequence

RefSeq Acc Id:

XM_005620372 ⟹ XP_005620429

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	56,407,506 - 56,421,507 (-)	NCBI
Dog10K_Boxer_Tasha	5	56,484,483 - 56,498,489 (-)	NCBI

Sequence:

show sequence

CATCGTCGCGCTGGGGTAGTGCCCACGCGCGCCGTTCTTGGTCCGCCTCTTCCCGGAAGAAAGA
TGGCCGCGGCCTAGGCGAGTCCGGTTAGAGGCGTCACGGGCGCTCGAGTCCCGCTCGGTGGCTC
CTGAGCGAGGGAAGGGAGCTCCTGGCCGCACTTGCAGGCCATCTCACAGTCCGGACCTGGGTGG
CCATGGCATTCAGGCAGGCTCCCCTCTGCGGCCTGGCTCCTCACTGCCTATGGCTCTTGGGGGT
CATCCTTTTGATGGATGTGTCTGCCCGGCCTGCCAACCACTCATCTGCTCGGGAGAGAGCAGGC
ACCAAGGACGAGCCTGAGATCCTACCCCCGGATCACCTGAATGGGGTGAAGCTGGAGATGGATG
GACACCTCAACAAGGACTTCCACCAGGAGGTCTTCCTGGGGAAGGACATGGACGGGTTTGAGGA
GGATGCAGAGCCACGGAGGAGCAGGCGGAAGCTGATGGTTATCTTTTCTAAGGTTGATGTGAAT
ACTGACCGGAAGATAAGCGCCAAGGAGATGCAGCACTGGATCATGGAGAAAACTGCAGAGCACT
TCCAGGAGGCCATCGAGGAGAGCAAGGTGCACTTCCACGCTGTGGACCCCGATGGCGATGGGCA
TGTGTCATGGGACGAGTATAAGGTGAAGTTTTTGGTGAGCAAAGGCCACAATGAACGAGAAATT
GCGGAGAAGATAAAGAATGGGGAGGAGCTGAAAGTCGACGAGGAGACACAGGAAGTCCTAGAGA
ACCTGAAGGATCGCTGGTATCAGGCGGACAACCCCCCTTCAGACCTGCTTCTGACGGAGGATGA
ATTCCTGTCATTTCTGCACCCTGAGCACAGCCGTGGCATGCTCAAGTTCATGGTCAAAGAGATT
GTCCGGGACCTGGACCAGGACGGTGACAAGCAGCTCTCACTGCCTGAGTTCATCTCTCTGCCCG
TGGGCACAGTAGAGAATCAGCAGGGCCAGGACATTGATGACAGTTGGGTCAGAGACCGAAAAAA
AGAGTTTGAGGAATTGATTGACGCCAACCATGACGGGATCGTGACCATGGCGGAACTGGAGGAC
TACATGGACCCCATGAACGAGTATAATGCCCTAAACGAGGCCAAGCAGATGATCGCCATCGCCG
ATGAGAACCAGAACCACCACCTAGAGCCTGAGGAGGTCCTCAAGTACAGCGAGTTCTTCACAGG
CAGCAAACTGATGGACTATGCCCGGAATGTGCACGAGGAGTTCTGAGCCCACCCCACCTGCCAC
CTGCCCTGCACACCTCGGCCCCCTGGTGCCTCCTAAAAGCCCCCCTTCCTGTGGCCCCGACAGC
TGTGGCTCCAGGCTTACTGAAGATGTGCTTGAACGGGCCCAAATCCCCGAGGTGCAGTTGTGGG
CTGGCCACCCTCCATGCATGGAGTCCCACAGGACTGTGCAGGTCACTTCTGAGAACTGACTGCA
TCAAGGCGCTGCAGCCTCACCATATCTGTGGGGAGTAACGCAGTTCCTGCCGTTTCCTTGAAGA
CCAAGAAGTGATCATAGTATTAGAATGAGCTCTGCTGAGAGCTCTTGGCCGGCCTCTGGGGGGT
GCCTGCCCCTTCCCGGGGTGCTGGGGAGGGGCCGCCACAATGTTTAGTCTCCGAAAACACAAAC
GCTTGTGACGAGAATCTCATTAATGTACTTTAAATTACAGTTGCTTTTTTCTCCTAGCTTCATT
TTTTTGTTGAAAAAAAAAATCCCATAAAATGATTTTGAATGTT

hide sequence

RefSeq Acc Id:

XM_022418890 ⟹ XP_022274598

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	56,407,506 - 56,421,493 (-)	NCBI
Dog10K_Boxer_Tasha	5	56,484,483 - 56,498,481 (-)	NCBI

Sequence:

show sequence

GGTAGTGCCCACGCGCGCCGTTCTTGGTCCGCCTCTTCCCGGAAGAAAGATGGCCGCGGCCTAG
GCGAGTCCGGTTAGAGGCGTCACGGGCGCTCGAGTCCCGCTCGGTGGCTCCTGAGCGAGGGAAG
GGAGCGACGGCTGCCTCCGGGAAACAAGCTGACGATGACCGGTCGGCAAGGGAGCCGGGGGGAC
CCCGGTGTTTACCGGCCAGGCGACCTCGCTGCCCTAACTGGTGGGACTTGGTGAAGATTTGAAA
TTGTGCGTGTGAAGACCCTGGCTTCCGGGTCGGCCAGTGTCAGTTGTTACCGACCTTCTCTACG
CGACTCCCGAGACCTGTGACGGGGCGTTTAGCTCCTGGCCGCACTTGCAGGCCATCTCACAGTC
CGGACCTGGGTGGCCATGGCATTCAGGCAGGCTCCCCTCTGCGGCCTGGCTCCTCACTGCCTAT
GGCTCTTGGGGGTCATCCTTTTGATGGATGTGTCTGCCCGGCCTGCCAACCACTCATCTGCTCG
GGAGAGAGCAGGCACCAAGGACGAGCCTGAGATCCTACCCCCGGATCACCTGAATGGGGTGAAG
CTGGAGATGGATGGACACCTCAACAAGGACTTCCACCAGGAGGTCTTCCTGGGGAAGGACATGG
ACGGGTTTGAGGAGGATGCAGAGCCACGGAGGAGCAGGCGGAAGCTGATGGTTATCTTTTCTAA
GGTTGATGTGAATACTGACCGGAAGATAAGCGCCAAGGAGATGCAGCACTGGATCATGGAGAAA
ACTGCAGAGCACTTCCAGGAGGCCATCGAGGAGAGCAAGGTGCACTTCCACGCTGTGGACCCCG
ATGGCGATGGGCATGTGTCATGGGACGAGTATAAGGTGAAGTTTTTGGTGAGCAAAGGCCACAA
TGAACGAGAAATTGCGGAGAAGATAAAGAATGGGGAGGAGCTGAAAGTCGACGAGGAGACACAG
GAAGTCCTAGAGAACCTGAAGGATCGCTGGTATCAGGCGGACAACCCCCCTTCAGACCTGCTTC
TGACGGAGGATGAATTCCTGTCATTTCTGCACCCTGAGCACAGCCGTGGCATGCTCAAGTTCAT
GGTCAAAGAGATTGTCCGGGACCTGGACCAGGACGGTGACAAGCAGCTCTCACTGCCTGAGTTC
ATCTCTCTGCCCGTGGGCACAGTAGAGAATCAGCAGGGCCAGGACATTGATGACAGTTGGGTCA
GAGACCGAAAAAAAGAGTTTGAGGAATTGATTGACGCCAACCATGACGGGATCGTGACCATGGC
GGAACTGGAGGACTACATGGACCCCATGAACGAGTATAATGCCCTAAACGAGGCCAAGCAGATG
ATCGCCATCGCCGATGAGAACCAGAACCACCACCTAGAGCCTGAGGAGGTCCTCAAGTACAGCG
AGTTCTTCACAGGCAGCAAACTGATGGACTATGCCCGGAATGTGCACGAGGAGTTCTGAGCCCA
CCCCACCTGCCACCTGCCCTGCACACCTCGGCCCCCTGGTGCCTCCTAAAAGCCCCCCTTCCTG
TGGCCCCGACAGCTGTGGCTCCAGGCTTACTGAAGATGTGCTTGAACGGGCCCAAATCCCCGAG
GTGCAGTTGTGGGCTGGCCACCCTCCATGCATGGAGTCCCACAGGACTGTGCAGGTCACTTCTG
AGAACTGACTGCATCAAGGCGCTGCAGCCTCACCATATCTGTGGGGAGTAACGCAGTTCCTGCC
GTTTCCTTGAAGACCAAGAAGTGATCATAGTATTAGAATGAGCTCTGCTGAGAGCTCTTGGCCG
GCCTCTGGGGGGTGCCTGCCCCTTCCCGGGGTGCTGGGGAGGGGCCGCCACAATGTTTAGTCTC
CGAAAACACAAACGCTTGTGACGAGAATCTCATTAATGTACTTTAAATTACAGTTGCTTTTTTC
TCCTAGCTTCATTTTTTTGTTGAAAAAAAAAATCCCATAAAATGATTTTGAATGTT

hide sequence

RefSeq Acc Id:

XM_038476427 ⟹ XP_038332355

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	5	56,601,139 - 56,615,150 (-)	NCBI

RefSeq Acc Id:

XM_038476428 ⟹ XP_038332356

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	5	56,601,139 - 56,615,142 (-)	NCBI

RefSeq Acc Id:

XM_038476429 ⟹ XP_038332357

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	5	56,601,139 - 56,615,147 (-)	NCBI

RefSeq Acc Id:

XM_038476430 ⟹ XP_038332358

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	5	56,601,139 - 56,615,139 (-)	NCBI

RefSeq Acc Id:

XM_038537574 ⟹ XP_038393502

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	5	56,883,417 - 56,897,430 (-)	NCBI

RefSeq Acc Id:

XM_038537575 ⟹ XP_038393503

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	5	56,883,417 - 56,897,422 (-)	NCBI

RefSeq Acc Id:

XM_038537576 ⟹ XP_038393504

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	5	56,883,417 - 56,897,427 (-)	NCBI

RefSeq Acc Id:

XM_038537577 ⟹ XP_038393505

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	5	56,883,417 - 56,897,419 (-)	NCBI

RefSeq Acc Id:

XM_038601732 ⟹ XP_038457660

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	5	56,493,416 - 56,507,429 (-)	NCBI

RefSeq Acc Id:

XM_038601733 ⟹ XP_038457661

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	5	56,493,416 - 56,507,421 (-)	NCBI

RefSeq Acc Id:

XM_038601734 ⟹ XP_038457662

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	5	56,493,416 - 56,507,426 (-)	NCBI

RefSeq Acc Id:

XM_038601735 ⟹ XP_038457663

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	5	56,493,416 - 56,507,418 (-)	NCBI

RefSeq Acc Id:

XM_038666301 ⟹ XP_038522229

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	5	56,610,405 - 56,624,414 (-)	NCBI

RefSeq Acc Id:

XM_038666302 ⟹ XP_038522230

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	5	56,610,405 - 56,624,406 (-)	NCBI

RefSeq Acc Id:

XM_038666303 ⟹ XP_038522231

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	5	56,610,405 - 56,624,411 (-)	NCBI

RefSeq Acc Id:

XM_038666304 ⟹ XP_038522232

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	5	56,610,405 - 56,624,403 (-)	NCBI

RefSeq Acc Id:

XM_536712 ⟹ XP_536712

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	56,407,506 - 56,421,515 (-)	NCBI
Dog10K_Boxer_Tasha	5	56,484,483 - 56,498,492 (-)	NCBI

Sequence:

show sequence

GGCACCAGCATCGTCGCGCTGGGGTAGTGCCCACGCGCGCCGTTCTTGGTCCGCCTCTTCCCGG
AAGAAAGATGGCCGCGGCCTAGGCGAGTCCGGTTAGAGGCGTCACGGGCGCTCGAGTCCCGCTC
GGTGGCTCCTGAGCGAGGGAAGGGAGGTCGCTCCTGGCCGCACTTGCAGGCCATCTCACAGTCC
GGACCTGGGTGGCCATGGCATTCAGGCAGGCTCCCCTCTGCGGCCTGGCTCCTCACTGCCTATG
GCTCTTGGGGGTCATCCTTTTGATGGATGTGTCTGCCCGGCCTGCCAACCACTCATCTGCTCGG
GAGAGAGCAGGCACCAAGGACGAGCCTGAGATCCTACCCCCGGATCACCTGAATGGGGTGAAGC
TGGAGATGGATGGACACCTCAACAAGGACTTCCACCAGGAGGTCTTCCTGGGGAAGGACATGGA
CGGGTTTGAGGAGGATGCAGAGCCACGGAGGAGCAGGCGGAAGCTGATGGTTATCTTTTCTAAG
GTTGATGTGAATACTGACCGGAAGATAAGCGCCAAGGAGATGCAGCACTGGATCATGGAGAAAA
CTGCAGAGCACTTCCAGGAGGCCATCGAGGAGAGCAAGGTGCACTTCCACGCTGTGGACCCCGA
TGGCGATGGGCATGTGTCATGGGACGAGTATAAGGTGAAGTTTTTGGTGAGCAAAGGCCACAAT
GAACGAGAAATTGCGGAGAAGATAAAGAATGGGGAGGAGCTGAAAGTCGACGAGGAGACACAGG
AAGTCCTAGAGAACCTGAAGGATCGCTGGTATCAGGCGGACAACCCCCCTTCAGACCTGCTTCT
GACGGAGGATGAATTCCTGTCATTTCTGCACCCTGAGCACAGCCGTGGCATGCTCAAGTTCATG
GTCAAAGAGATTGTCCGGGACCTGGACCAGGACGGTGACAAGCAGCTCTCACTGCCTGAGTTCA
TCTCTCTGCCCGTGGGCACAGTAGAGAATCAGCAGGGCCAGGACATTGATGACAGTTGGGTCAG
AGACCGAAAAAAAGAGTTTGAGGAATTGATTGACGCCAACCATGACGGGATCGTGACCATGGCG
GAACTGGAGGACTACATGGACCCCATGAACGAGTATAATGCCCTAAACGAGGCCAAGCAGATGA
TCGCCATCGCCGATGAGAACCAGAACCACCACCTAGAGCCTGAGGAGGTCCTCAAGTACAGCGA
GTTCTTCACAGGCAGCAAACTGATGGACTATGCCCGGAATGTGCACGAGGAGTTCTGAGCCCAC
CCCACCTGCCACCTGCCCTGCACACCTCGGCCCCCTGGTGCCTCCTAAAAGCCCCCCTTCCTGT
GGCCCCGACAGCTGTGGCTCCAGGCTTACTGAAGATGTGCTTGAACGGGCCCAAATCCCCGAGG
TGCAGTTGTGGGCTGGCCACCCTCCATGCATGGAGTCCCACAGGACTGTGCAGGTCACTTCTGA
GAACTGACTGCATCAAGGCGCTGCAGCCTCACCATATCTGTGGGGAGTAACGCAGTTCCTGCCG
TTTCCTTGAAGACCAAGAAGTGATCATAGTATTAGAATGAGCTCTGCTGAGAGCTCTTGGCCGG
CCTCTGGGGGGTGCCTGCCCCTTCCCGGGGTGCTGGGGAGGGGCCGCCACAATGTTTAGTCTCC
GAAAACACAAACGCTTGTGACGAGAATCTCATTAATGTACTTTAAATTACAGTTGCTTTTTTCT
CCTAGCTTCATTTTTTTGTTGAAAAAAAAAATCCCATAAAATGATTTTGAATGTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005620427	(Get FASTA)	NCBI Sequence Viewer
	XP_005620429	(Get FASTA)	NCBI Sequence Viewer
	XP_022274598	(Get FASTA)	NCBI Sequence Viewer
	XP_038332355	(Get FASTA)	NCBI Sequence Viewer
	XP_038332356	(Get FASTA)	NCBI Sequence Viewer
	XP_038332357	(Get FASTA)	NCBI Sequence Viewer
	XP_038332358	(Get FASTA)	NCBI Sequence Viewer
	XP_038393502	(Get FASTA)	NCBI Sequence Viewer
	XP_038393503	(Get FASTA)	NCBI Sequence Viewer
	XP_038393504	(Get FASTA)	NCBI Sequence Viewer
	XP_038393505	(Get FASTA)	NCBI Sequence Viewer
	XP_038457660	(Get FASTA)	NCBI Sequence Viewer
	XP_038457661	(Get FASTA)	NCBI Sequence Viewer
	XP_038457662	(Get FASTA)	NCBI Sequence Viewer
	XP_038457663	(Get FASTA)	NCBI Sequence Viewer
	XP_038522229	(Get FASTA)	NCBI Sequence Viewer
	XP_038522230	(Get FASTA)	NCBI Sequence Viewer
	XP_038522231	(Get FASTA)	NCBI Sequence Viewer
	XP_038522232	(Get FASTA)	NCBI Sequence Viewer
	XP_536712	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000033564.4
	ENSCAFP00030000161.1
	ENSCAFP00040005374.1
	ENSCAFP00845031777
	ENSCAFP00845031777.1

RefSeq Acc Id:

XP_005620429 ⟸ XM_005620372

- UniProtKB:

A0A8C0KC52 (UniProtKB/TrEMBL), A0A8I3PU05 (UniProtKB/TrEMBL), A0A8P0NMK2 (UniProtKB/TrEMBL), A0A8C0LTK1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAFRQAPLCGLAPHCLWLLGVILLMDVSARPANHSSARERAGTKDEPEILPPDHLNGVKLEMDG
HLNKDFHQEVFLGKDMDGFEEDAEPRRSRRKLMVIFSKVDVNTDRKISAKEMQHWIMEKTAEHF
QEAIEESKVHFHAVDPDGDGHVSWDEYKVKFLVSKGHNEREIAEKIKNGEELKVDEETQEVLEN
LKDRWYQADNPPSDLLLTEDEFLSFLHPEHSRGMLKFMVKEIVRDLDQDGDKQLSLPEFISLPV
GTVENQQGQDIDDSWVRDRKKEFEELIDANHDGIVTMAELEDYMDPMNEYNALNEAKQMIAIAD
ENQNHHLEPEEVLKYSEFFTGSKLMDYARNVHEEF

hide sequence

RefSeq Acc Id:

XP_536712 ⟸ XM_536712

- UniProtKB:

A0A8C0KC52 (UniProtKB/TrEMBL), A0A8I3PU05 (UniProtKB/TrEMBL), A0A8P0NMK2 (UniProtKB/TrEMBL), A0A8C0LTK1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAFRQAPLCGLAPHCLWLLGVILLMDVSARPANHSSARERAGTKDEPEILPPDHLNGVKLEMDG
HLNKDFHQEVFLGKDMDGFEEDAEPRRSRRKLMVIFSKVDVNTDRKISAKEMQHWIMEKTAEHF
QEAIEESKVHFHAVDPDGDGHVSWDEYKVKFLVSKGHNEREIAEKIKNGEELKVDEETQEVLEN
LKDRWYQADNPPSDLLLTEDEFLSFLHPEHSRGMLKFMVKEIVRDLDQDGDKQLSLPEFISLPV
GTVENQQGQDIDDSWVRDRKKEFEELIDANHDGIVTMAELEDYMDPMNEYNALNEAKQMIAIAD
ENQNHHLEPEEVLKYSEFFTGSKLMDYARNVHEEF

hide sequence

RefSeq Acc Id:

XP_005620427 ⟸ XM_005620370

- UniProtKB:

A0A8C0KC52 (UniProtKB/TrEMBL), A0A8I3PU05 (UniProtKB/TrEMBL), A0A8P0NMK2 (UniProtKB/TrEMBL), A0A8C0LTK1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAFRQAPLCGLAPHCLWLLGVILLMDVSARPANHSSARERAGTKDEPEILPPDHLNGVKLEMDG
HLNKDFHQEVFLGKDMDGFEEDAEPRRSRRKLMVIFSKVDVNTDRKISAKEMQHWIMEKTAEHF
QEAIEESKVHFHAVDPDGDGHVSWDEYKVKFLVSKGHNEREIAEKIKNGEELKVDEETQEVLEN
LKDRWYQADNPPSDLLLTEDEFLSFLHPEHSRGMLKFMVKEIVRDLDQDGDKQLSLPEFISLPV
GTVENQQGQDIDDSWVRDRKKEFEELIDANHDGIVTMAELEDYMDPMNEYNALNEAKQMIAIAD
ENQNHHLEPEEVLKYSEFFTGSKLMDYARNVHEEF

hide sequence

RefSeq Acc Id:

XP_022274598 ⟸ XM_022418890

- UniProtKB:

A0A8C0KC52 (UniProtKB/TrEMBL), A0A8I3PU05 (UniProtKB/TrEMBL), A0A8P0NMK2 (UniProtKB/TrEMBL), A0A8C0LTK1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAFRQAPLCGLAPHCLWLLGVILLMDVSARPANHSSARERAGTKDEPEILPPDHLNGVKLEMDG
HLNKDFHQEVFLGKDMDGFEEDAEPRRSRRKLMVIFSKVDVNTDRKISAKEMQHWIMEKTAEHF
QEAIEESKVHFHAVDPDGDGHVSWDEYKVKFLVSKGHNEREIAEKIKNGEELKVDEETQEVLEN
LKDRWYQADNPPSDLLLTEDEFLSFLHPEHSRGMLKFMVKEIVRDLDQDGDKQLSLPEFISLPV
GTVENQQGQDIDDSWVRDRKKEFEELIDANHDGIVTMAELEDYMDPMNEYNALNEAKQMIAIAD
ENQNHHLEPEEVLKYSEFFTGSKLMDYARNVHEEF

hide sequence

RefSeq Acc Id:

ENSCAFP00000033564 ⟸ ENSCAFT00000037918

RefSeq Acc Id:

XP_038332355 ⟸ XM_038476427

RefSeq Acc Id:

XP_038332357 ⟸ XM_038476429

RefSeq Acc Id:

XP_038332356 ⟸ XM_038476428

RefSeq Acc Id:

XP_038332358 ⟸ XM_038476430

RefSeq Acc Id:

XP_038457660 ⟸ XM_038601732

RefSeq Acc Id:

XP_038457662 ⟸ XM_038601734

RefSeq Acc Id:

XP_038457661 ⟸ XM_038601733

RefSeq Acc Id:

XP_038457663 ⟸ XM_038601735

RefSeq Acc Id:	XP_038522229 ⟸ XM_038666301
- UniProtKB:	A0A8C0KC52 (UniProtKB/TrEMBL), A0A8I3PU05 (UniProtKB/TrEMBL), A0A8P0NMK2 (UniProtKB/TrEMBL), A0A8C0LTK1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038522231 ⟸ XM_038666303
- UniProtKB:	A0A8C0KC52 (UniProtKB/TrEMBL), A0A8I3PU05 (UniProtKB/TrEMBL), A0A8P0NMK2 (UniProtKB/TrEMBL), A0A8C0LTK1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038522230 ⟸ XM_038666302
- UniProtKB:	A0A8C0KC52 (UniProtKB/TrEMBL), A0A8I3PU05 (UniProtKB/TrEMBL), A0A8P0NMK2 (UniProtKB/TrEMBL), A0A8C0LTK1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038522232 ⟸ XM_038666304
- UniProtKB:	A0A8C0KC52 (UniProtKB/TrEMBL), A0A8I3PU05 (UniProtKB/TrEMBL), A0A8P0NMK2 (UniProtKB/TrEMBL), A0A8C0LTK1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038393502 ⟸ XM_038537574
- UniProtKB:	A0A8C0KC52 (UniProtKB/TrEMBL), A0A8C0LTK1 (UniProtKB/TrEMBL), A0A8I3PU05 (UniProtKB/TrEMBL), A0A8P0NMK2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038393504 ⟸ XM_038537576
- UniProtKB:	A0A8C0KC52 (UniProtKB/TrEMBL), A0A8C0LTK1 (UniProtKB/TrEMBL), A0A8I3PU05 (UniProtKB/TrEMBL), A0A8P0NMK2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038393503 ⟸ XM_038537575
- UniProtKB:	A0A8C0KC52 (UniProtKB/TrEMBL), A0A8C0LTK1 (UniProtKB/TrEMBL), A0A8I3PU05 (UniProtKB/TrEMBL), A0A8P0NMK2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038393505 ⟸ XM_038537577
- UniProtKB:	A0A8C0KC52 (UniProtKB/TrEMBL), A0A8C0LTK1 (UniProtKB/TrEMBL), A0A8I3PU05 (UniProtKB/TrEMBL), A0A8P0NMK2 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845031777 ⟸ ENSCAFT00845040597

Protein Domains

EF-hand

Promoters

RGD ID:

13683338

Promoter ID:

EPDNEW_C1403

Type:

initiation region

Name:

SDF4_1

Description:

stromal cell derived factor 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	56,421,461 - 56,421,521	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000019323	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030000128	UniProtKB/TrEMBL
	ENSCAFG00040003272	UniProtKB/TrEMBL
	ENSCAFG00845023000	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000037918.4	UniProtKB/TrEMBL
	ENSCAFT00030000192.1	UniProtKB/TrEMBL
	ENSCAFT00040006215.1	UniProtKB/TrEMBL
	ENSCAFT00845040597	ENTREZGENE
	ENSCAFT00845040597.1	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	CAB45	UniProtKB/TrEMBL
	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
KEGG Report	cfa:479572	UniProtKB/TrEMBL
NCBI Gene	SDF4	ENTREZGENE
PANTHER	45 KDA CALCIUM-BINDING PROTEIN	UniProtKB/TrEMBL
	RETICULOCALBIN	UniProtKB/TrEMBL
Pfam	EF-hand_7	UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
SMART	EFh	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	A0A8C0KC52	ENTREZGENE
	A0A8C0LTK1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PU05	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0NMK2	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:45948	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD