TRIP13 (thyroid hormone receptor interactor 13) - Rat Genome Database

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Gene: TRIP13 (thyroid hormone receptor interactor 13) Canis lupus familiaris
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Symbol: TRIP13
Name: thyroid hormone receptor interactor 13
RGD ID: 12111932
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); identical protein binding (inferred); INVOLVED IN double-strand break repair (ortholog); female meiosis I (ortholog); male meiosis I (ortholog); ASSOCIATED WITH Aneuploidy (ortholog); autosomal dominant dyskeratosis congenita 2 (ortholog); COVID-19 (ortholog); FOUND IN chromosome (inferred); male germ cell nucleus (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: pachytene checkpoint protein 2 homolog; PCH2; Thyroid receptor-interacting protein 13; TR-interacting protein 13; TRIP-13
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13411,522,940 - 11,539,885 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3411,522,940 - 11,539,885 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3416,033,842 - 16,050,187 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03411,424,655 - 11,441,021 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3411,424,655 - 11,441,021 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13411,475,417 - 11,491,720 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03411,455,172 - 11,471,463 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03411,665,947 - 11,682,409 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IBA,IEA)
male germ cell nucleus  (IEA)
nucleus  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:16341006   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TRIP13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13411,522,940 - 11,539,885 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3411,522,940 - 11,539,885 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3416,033,842 - 16,050,187 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03411,424,655 - 11,441,021 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3411,424,655 - 11,441,021 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13411,475,417 - 11,491,720 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03411,455,172 - 11,471,463 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03411,665,947 - 11,682,409 (-)NCBIUU_Cfam_GSD_1.0
TRIP13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385892,884 - 919,348 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5892,884 - 919,357 (+)EnsemblGRCh38hg38GRCh38
GRCh375892,999 - 918,235 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365946,004 - 971,160 (+)NCBINCBI36Build 36hg18NCBI36
Build 345946,003 - 971,158NCBI
Celera5934,119 - 956,942 (+)NCBICelera
Cytogenetic Map5p15.33NCBI
HuRef5878,510 - 902,319 (+)NCBIHuRef
CHM1_15892,681 - 916,387 (+)NCBICHM1_1
T2T-CHM13v2.05798,936 - 824,664 (+)NCBIT2T-CHM13v2.0
Trip13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391374,060,577 - 74,085,855 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1374,059,466 - 74,085,903 (-)EnsemblGRCm39 Ensembl
GRCm381373,912,450 - 73,937,795 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1373,911,347 - 73,937,784 (-)EnsemblGRCm38mm10GRCm38
MGSCv371374,049,910 - 74,075,215 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361374,377,349 - 74,403,784 (-)NCBIMGSCv36mm8
Celera1376,242,042 - 76,267,349 (-)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.15NCBI
Trip13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8131,185,700 - 31,230,638 (+)NCBIGRCr8
mRatBN7.2129,357,093 - 29,402,078 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,357,130 - 29,402,074 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx129,158,523 - 29,203,557 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0135,158,377 - 35,203,413 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,359,151 - 29,404,185 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0131,967,980 - 32,012,923 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl131,967,978 - 32,012,919 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0133,392,425 - 33,437,368 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4130,165,330 - 30,210,271 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1130,168,274 - 30,213,214 (+)NCBI
Celera128,006,108 - 28,051,038 (+)NCBICelera
Cytogenetic Map1p11NCBI
Trip13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955504434,159 - 452,671 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955504434,187 - 452,636 (+)NCBIChiLan1.0ChiLan1.0
LOC129394329
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21862,747,149 - 62,752,803 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11668,664,916 - 68,671,423 (+)NCBINHGRI_mPanPan1
Trip13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213244,572,199 - 244,584,096 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936815734,167 - 745,092 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936815734,029 - 745,381 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIP13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1679,458,847 - 79,473,712 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11679,458,843 - 79,473,705 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TRIP13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.14737,214 - 760,263 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl4737,263 - 760,171 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605435,288,652 - 35,311,359 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trip13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624751439,119 - 459,080 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624751439,195 - 459,033 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TRIP13
261 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 8
Low 5 5 22 6 6 6 6 5 12 10 6
Below cutoff 1

Sequence


RefSeq Acc Id: ENSCAFT00000017241   ⟹   ENSCAFP00000015956
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3411,522,940 - 11,539,885 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845047843   ⟹   ENSCAFP00845037534
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3411,424,655 - 11,441,021 (-)Ensembl
RefSeq Acc Id: NM_001313869   ⟹   NP_001300798
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13411,522,940 - 11,539,885 (-)NCBI
Dog10K_Boxer_Tasha3416,033,842 - 16,050,187 (-)NCBI
ROS_Cfam_1.03411,424,655 - 11,441,021 (-)NCBI
UMICH_Zoey_3.13411,475,417 - 11,491,720 (-)NCBI
UNSW_CanFamBas_1.03411,455,172 - 11,471,463 (-)NCBI
UU_Cfam_GSD_1.03411,665,947 - 11,682,409 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001300798 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein E2R222 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000015956.2
  ENSCAFP00000071449.1
  ENSCAFP00030013372.1
  ENSCAFP00040040430.1
  ENSCAFP00040040455.1
  ENSCAFP00805028681
  ENSCAFP00845037534
  ENSCAFP00845037534.1
RefSeq Acc Id: NP_001300798   ⟸   NM_001313869
- UniProtKB: E2R222 (UniProtKB/Swiss-Prot),   A0A8C0LC79 (UniProtKB/TrEMBL),   A0A8P0TPN8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000015956   ⟸   ENSCAFT00000017241
RefSeq Acc Id: ENSCAFP00845037534   ⟸   ENSCAFT00845047843
Protein Domains
AAA+ ATPase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010838 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSCAFG00030008325 UniProtKB/Swiss-Prot
  ENSCAFG00040024866 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSCAFG00805020208 UniProtKB/Swiss-Prot
  ENSCAFG00845027144 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSCAFT00000017241.4 UniProtKB/Swiss-Prot
  ENSCAFT00000099087.1 UniProtKB/TrEMBL
  ENSCAFT00030015334.1 UniProtKB/Swiss-Prot
  ENSCAFT00040046330.1 UniProtKB/TrEMBL
  ENSCAFT00040046358.1 UniProtKB/Swiss-Prot
  ENSCAFT00805036592 UniProtKB/Swiss-Prot
  ENSCAFT00845047843 ENTREZGENE
  ENSCAFT00845047843.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_AAA_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ClpA/B UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pch2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report cfa:609426 UniProtKB/Swiss-Prot
NCBI Gene TRIP13 ENTREZGENE
PANTHER PACHYTENE CHECKPOINT PROTEIN 2 HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45991 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS CLPPROTEASEA UniProtKB/Swiss-Prot
PROSITE AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8C0LC79 ENTREZGENE
  A0A8C0TPK4_CANLF UniProtKB/TrEMBL
  A0A8P0TPN8 ENTREZGENE, UniProtKB/TrEMBL
  E2R222 ENTREZGENE, UniProtKB/Swiss-Prot
VGNC ID VGNC:47846 ENTREZGENE