TTC8 (tetratricopeptide repeat domain 8)

Gene: TTC8 (tetratricopeptide repeat domain 8) Canis lupus familiaris

Analyze

Symbol:

TTC8

Name:

tetratricopeptide repeat domain 8

RGD ID:

12071899

Description:

ENCODES a protein that exhibits RNA polymerase II-specific DNA-binding transcription factor binding (inferred); INVOLVED IN axon guidance (ortholog); camera-type eye photoreceptor cell differentiation (ortholog); cilium assembly (ortholog); ASSOCIATED WITH retinal degeneration; Bardet-Biedl syndrome (ortholog); Bardet-Biedl syndrome 8 (ortholog); FOUND IN BBSome (ortholog)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

tetratricopeptide repeat protein 8

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	60,061,670 - 60,115,464 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	60,061,732 - 60,115,075 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	59,641,066 - 59,693,906 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	60,332,658 - 60,386,187 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	60,332,402 - 60,386,190 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	60,013,742 - 60,066,541 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	60,063,485 - 60,116,262 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	60,391,356 - 60,444,177 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bardet-Biedl syndrome (ISO)

Bardet-Biedl syndrome 8 (ISO)

fundus dystrophy (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Leber congenital amaurosis 3 (ISO)

macular degeneration (ISO)

retinal degeneration (IAGP)

retinitis pigmentosa (ISO)

retinitis pigmentosa 51 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon guidance (IEA,ISO)

camera-type eye photoreceptor cell differentiation (IEA,ISO)

cilium assembly (IEA,ISO)

establishment of anatomical structure orientation (IEA)

establishment of epithelial cell apical/basal polarity (IEA,ISO)

establishment of planar polarity (IEA,ISO)

fat cell differentiation (IEA)

inner ear receptor cell stereocilium organization (IEA,ISO)

multi-ciliated epithelial cell differentiation (IEA,ISO)

multicellular organism growth (IEA,ISO)

non-motile cilium assembly (IBA,IEA)

olfactory bulb development (IEA,ISO)

protein localization to plasma membrane (IEA,ISO)

regulation of protein localization (IEA,ISO)

regulation of stress fiber assembly (IEA,ISO)

renal tubule development (IEA,ISO)

sensory perception of smell (IEA,ISO)

Cellular Component

BBSome (IBA,IEA,ISO)

centrosome (IEA)

ciliary basal body (IBA,IEA)

ciliary membrane (IEA)

cilium (IEA)

membrane (IEA)

non-motile cilium (IBA,IEA)

photoreceptor connecting cilium (IEA)

Molecular Function

protein binding (ISO)

RNA polymerase II-specific DNA-binding transcription factor binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:26427412	PMID:30032202	PMID:32962042

Genomics

Comparative Map Data

TTC8
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	60,061,670 - 60,115,464 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	60,061,732 - 60,115,075 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	59,641,066 - 59,693,906 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	60,332,658 - 60,386,187 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	60,332,402 - 60,386,190 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	60,013,742 - 60,066,541 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	60,063,485 - 60,116,262 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	60,391,356 - 60,444,177 (+)	NCBI		UU_Cfam_GSD_1.0

TTC8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	88,824,153 - 88,881,079 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	88,824,153 - 88,881,078 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	89,290,497 - 89,347,423 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	88,360,731 - 88,414,088 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	88,360,730 - 88,414,087	NCBI
Celera	14	69,339,325 - 69,392,681 (+)	NCBI		Celera
Cytogenetic Map	14	q31.3	NCBI
HuRef	14	69,465,840 - 69,519,171 (+)	NCBI		HuRef
CHM1_1	14	89,228,786 - 89,282,145 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	83,047,758 - 83,104,682 (+)	NCBI		T2T-CHM13v2.0

Ttc8
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	98,886,796 - 98,949,509 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	98,886,833 - 98,949,497 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	98,920,537 - 98,983,250 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	98,920,574 - 98,983,238 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	100,158,784 - 100,221,448 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	99,321,639 - 99,384,288 (+)	NCBI		MGSCv36	mm8
Celera	12	100,146,253 - 100,210,179 (+)	NCBI		Celera
Cytogenetic Map	12	E	NCBI
cM Map	12	49.88	NCBI

Ttc8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	123,927,657 - 124,025,354 (+)	NCBI		GRCr8
mRatBN7.2	6	118,198,186 - 118,252,422 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	118,198,201 - 118,252,418 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	118,348,070 - 118,402,289 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	118,644,871 - 118,699,091 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	117,979,722 - 118,033,939 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	122,920,308 - 122,974,525 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	122,920,317 - 122,974,522 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	132,140,808 - 132,207,306 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	123,117,534 - 123,171,840 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	123,121,373 - 123,174,881 (+)	NCBI
Celera	6	115,755,975 - 115,810,232 (+)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

Ttc8
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	11,409,982 - 11,466,523 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955438	11,410,196 - 11,466,044 (+)	NCBI	ChiLan1.0	ChiLan1.0

TTC8
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	89,967,618 - 90,027,137 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	89,187,209 - 89,243,644 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	69,446,355 - 69,502,351 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	88,802,812 - 88,857,055 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	88,802,812 - 88,857,055 (+)	Ensembl	panpan1.1		panPan2

Ttc8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	15,762,381 - 15,810,727 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	16,258,058 - 16,306,589 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	16,258,247 - 16,306,077 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TTC8
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	110,731,731 - 110,784,853 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	110,731,729 - 110,783,999 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	117,222,186 - 117,274,088 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TTC8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	66,483,808 - 66,539,717 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	66,483,864 - 66,539,142 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	53,829,890 - 53,884,739 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ttc8
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	13,437,221 - 13,497,510 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	13,437,234 - 13,497,269 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in TTC8
626 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium			8						11
Low	5	5	8		6		6	6	1	8	10	6
Below cutoff			6	6		6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001284469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003639207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014115660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014115661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022421756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038672886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038672888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038672889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JQ941742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JQ941743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000027700 ⟹ ENSCAFP00000025761

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	8	60,061,732 - 60,115,075 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000043691 ⟹ ENSCAFP00000043116

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	8	60,061,732 - 60,115,075 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000050179 ⟹ ENSCAFP00000039614

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	8	60,061,732 - 60,115,075 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000070341 ⟹ ENSCAFP00000064879

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	8	60,061,732 - 60,115,075 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000086744 ⟹ ENSCAFP00000046315

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	8	60,079,053 - 60,115,075 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000087482 ⟹ ENSCAFP00000049235

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	8	60,061,732 - 60,115,075 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000093101 ⟹ ENSCAFP00000057358

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	8	60,076,171 - 60,115,075 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845021855 ⟹ ENSCAFP00845017191

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	8	60,332,402 - 60,386,183 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845021943 ⟹ ENSCAFP00845017255

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	8	60,332,402 - 60,386,183 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845022020 ⟹ ENSCAFP00845017311

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	8	60,332,567 - 60,386,190 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845022044 ⟹ ENSCAFP00845017330

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	8	60,332,567 - 60,386,190 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845022096 ⟹ ENSCAFP00845017373

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	8	60,332,584 - 60,386,160 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845022152 ⟹ ENSCAFP00845017417

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	8	60,332,710 - 60,386,190 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845022177 ⟹ ENSCAFP00845017438

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	8	60,332,779 - 60,386,183 (+)	Ensembl

RefSeq Acc Id:

NM_001284469 ⟹ NP_001271398

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	8	60,061,732 - 60,114,941 (+)	NCBI
Dog10K_Boxer_Tasha	8	59,641,066 - 59,693,906 (+)	NCBI
ROS_Cfam_1.0	8	60,332,710 - 60,385,667 (+)	NCBI
UMICH_Zoey_3.1	8	60,013,742 - 60,066,541 (+)	NCBI
UNSW_CanFamBas_1.0	8	60,063,485 - 60,116,262 (+)	NCBI
UU_Cfam_GSD_1.0	8	60,391,356 - 60,444,177 (+)	NCBI

Sequence:

show sequence

ATGGGCTCGGAGATGGAGCCGCTGCTCCTGGCCTGGAGCTATTTTAGGCGCAGGAAGTTCCAGC
TCTGCGCAGATCTGTGCACGCAGATGCTGGAGAAGTCCCCTTACGACCAGGCAGCTTGGATTTT
AAAGGCACGAGCACTAACTGAAATGGTATACGTAGATGAAACTGATGTAAATCAGGAAGGAATT
GCAGAAATGATGCTGGATGAAAATGCTATTGCTCAAGTTCCACGCCCTGGAACATCTTTGAAAC
TCCCTGGAACTAATCAGACAGGAGGGCCTAGTCCAGCTATCAGGCCAATCACTCAAGCTGGAAG
ACCCATTACAGGTTTCCTTAGACCTGGCACACAGAGTGGAAGGCCTGGCACTATGGAACAGGCT
ATTAGAACACCCAGAACTGCCTACACAGCTCGCCCTATCACCAGCTCATCTGGAAGATTTGTCA
GGCTGGGAACGGCTTCCATGCTTACAAGTCCGGATGGACCTTTTATAAATTTATCTAGACTAAA
TTTAACAAAATATGCTCAGAAACCTAAATTGGCAAAGGCTTTGTTTGAGTATATCTTTCATCAT
GAAAATGATGTTAAGACTGCTTTGGACTTGGCTGCCCTTTCCACAGAGCACTCTCAGTACAAGG
ACTGGTGGTGGAAAGTACAGATTGGAAAATGTTACTACAGGTTAGGAATGTATCGTGAAGCAGA
AAAACAGTTTAAATCAGCCCTCAAGCAGCAGGAAATGGTAGATACATTTCTCTACTTGGCAAAA
GTTTATATCTCATTGGATCAACCAGTGACGGCTTTAACTCTTTTCAAACAAGGCTTAGATAAGT
TTCCAGGAGAAGTAACCCTACTTTGTGGAATTGCCAGGATCTATGAGGAAATGAACAATATTTC
ATCAGCAGCTGAATACTACAAAGAAGTTTTGAAACAGGACAATACTCATGTGGAAGCCATTGCA
TGCATTGGAAGCAACCACTTTTATTCTGATCAACCAGAAATAGCTCTCCGATTTTACAGGCGAC
TCCTGCAGATGGGTGTTTATAACTGCCAGCTTTTTAACAATCTGGGCCTCTGCTGCTTCTATGC
CCAGCAGTATGATATGACTCTGACCTCATTTGAACGTGCCCTTGCTCTGGCTGAAAACGAAGAA
GAGGCAGCTGACGTCTGGTACAACTTGGGCCACATAGCTGTGGGTATAGGAGATATGAATTTGG
CCCATCAGTGCTTCAGGCTCGCTCTGGTCAACAACAATAACCACGCTGAGGCCTACAACAACCT
GGCTGTACTGGAGATGCGTAAGGGCCACATTGAGCAGGCAAGAGCACTATTACAAACTGCATCA
TCTTTGGCACCCCATATGTATGAGCCGCATTTTAATTTTGCAACTGTCTCTGATAAGATTGGAG
ATTTACAAAGAAGCTATGTTGCTGCTCAGAAGTCAGAAGCAGCATTTCCAGGTCATGTGGATAC
CCAACATTTAATTAAACAACTAAAGCAGCATTTTGCTATGCTCTGA

hide sequence

RefSeq Acc Id:

XM_038672886 ⟹ XP_038528814

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	8	60,332,658 - 60,386,187 (+)	NCBI

RefSeq Acc Id:

XM_038672888 ⟹ XP_038528816

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	8	60,347,113 - 60,386,187 (+)	NCBI

RefSeq Acc Id:

XM_038672889 ⟹ XP_038528817

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	8	60,332,768 - 60,386,187 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001271398	(Get FASTA)	NCBI Sequence Viewer
	XP_038528814	(Get FASTA)	NCBI Sequence Viewer
	XP_038528816	(Get FASTA)	NCBI Sequence Viewer
	XP_038528817	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AGC59869	(Get FASTA)	NCBI Sequence Viewer
	AGC59870	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000025761.5
	ENSCAFP00000039614.2
	ENSCAFP00000043116.2
	ENSCAFP00000046315.2
	ENSCAFP00000049235.1
	ENSCAFP00000057358.2
	ENSCAFP00000064879.1
	ENSCAFP00030003263.1
	ENSCAFP00030003307.1
	ENSCAFP00030003315.1
	ENSCAFP00030003333.1
	ENSCAFP00030003354.1
	ENSCAFP00040004335.1
	ENSCAFP00040004381.1
	ENSCAFP00040004391.1
	ENSCAFP00040004399.1
	ENSCAFP00040004418.1
	ENSCAFP00845017191
	ENSCAFP00845017191.1
	ENSCAFP00845017255.1
	ENSCAFP00845017311.1
	ENSCAFP00845017330.1
	ENSCAFP00845017373
	ENSCAFP00845017373.1
	ENSCAFP00845017417.1
	ENSCAFP00845017438
	ENSCAFP00845017438.1

RefSeq Acc Id:

NP_001271398 ⟸ NM_001284469

- UniProtKB:

A0A8C0KVK4 (UniProtKB/TrEMBL), R4ITK9 (UniProtKB/TrEMBL), A0A8C0PUU0 (UniProtKB/TrEMBL), A0A8P0SWK4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGSEMEPLLLAWSYFRRRKFQLCADLCTQMLEKSPYDQAAWILKARALTEMVYVDETDVNQEGI
AEMMLDENAIAQVPRPGTSLKLPGTNQTGGPSPAIRPITQAGRPITGFLRPGTQSGRPGTMEQA
IRTPRTAYTARPITSSSGRFVRLGTASMLTSPDGPFINLSRLNLTKYAQKPKLAKALFEYIFHH
ENDVKTALDLAALSTEHSQYKDWWWKVQIGKCYYRLGMYREAEKQFKSALKQQEMVDTFLYLAK
VYISLDQPVTALTLFKQGLDKFPGEVTLLCGIARIYEEMNNISSAAEYYKEVLKQDNTHVEAIA
CIGSNHFYSDQPEIALRFYRRLLQMGVYNCQLFNNLGLCCFYAQQYDMTLTSFERALALAENEE
EAADVWYNLGHIAVGIGDMNLAHQCFRLALVNNNNHAEAYNNLAVLEMRKGHIEQARALLQTAS
SLAPHMYEPHFNFATVSDKIGDLQRSYVAAQKSEAAFPGHVDTQHLIKQLKQHFAML

hide sequence

RefSeq Acc Id:

ENSCAFP00000039614 ⟸ ENSCAFT00000050179

RefSeq Acc Id:

ENSCAFP00000064879 ⟸ ENSCAFT00000070341

RefSeq Acc Id:

ENSCAFP00000043116 ⟸ ENSCAFT00000043691

RefSeq Acc Id:

ENSCAFP00000049235 ⟸ ENSCAFT00000087482

RefSeq Acc Id:

ENSCAFP00000057358 ⟸ ENSCAFT00000093101

RefSeq Acc Id:

ENSCAFP00000025761 ⟸ ENSCAFT00000027700

RefSeq Acc Id:

ENSCAFP00000046315 ⟸ ENSCAFT00000086744

RefSeq Acc Id:	XP_038528814 ⟸ XM_038672886
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I3NKT7 (UniProtKB/TrEMBL), A0A8I3NM60 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038528817 ⟸ XM_038672889
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I3NPG7 (UniProtKB/TrEMBL), A0A8I3NLA0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038528816 ⟸ XM_038672888
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I3NLA0 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845017330 ⟸ ENSCAFT00845022044

RefSeq Acc Id:

ENSCAFP00845017373 ⟸ ENSCAFT00845022096

RefSeq Acc Id:

ENSCAFP00845017311 ⟸ ENSCAFT00845022020

RefSeq Acc Id:

ENSCAFP00845017255 ⟸ ENSCAFT00845021943

RefSeq Acc Id:

ENSCAFP00845017438 ⟸ ENSCAFT00845022177

RefSeq Acc Id:

ENSCAFP00845017191 ⟸ ENSCAFT00845021855

RefSeq Acc Id:

ENSCAFP00845017417 ⟸ ENSCAFT00845022152

Promoters

RGD ID:

13684307

Promoter ID:

EPDNEW_C2376

Type:

single initiation site

Name:

TTC8_1

Description:

tetratricopeptide repeat domain 8

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	8	60,061,707 - 60,061,767	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000017478	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030001693	UniProtKB/TrEMBL
	ENSCAFG00040002299	UniProtKB/TrEMBL
	ENSCAFG00845012241	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000027700.6	UniProtKB/TrEMBL
	ENSCAFT00000043691.3	UniProtKB/TrEMBL
	ENSCAFT00000050179.4	UniProtKB/TrEMBL
	ENSCAFT00000070341.2	UniProtKB/TrEMBL
	ENSCAFT00000086744.2	UniProtKB/TrEMBL
	ENSCAFT00000087482.2	UniProtKB/TrEMBL
	ENSCAFT00000093101.2	UniProtKB/TrEMBL
	ENSCAFT00030003679.1	UniProtKB/TrEMBL
	ENSCAFT00030003728.1	UniProtKB/TrEMBL
	ENSCAFT00030003736.1	UniProtKB/TrEMBL
	ENSCAFT00030003757.1	UniProtKB/TrEMBL
	ENSCAFT00030003779.1	UniProtKB/TrEMBL
	ENSCAFT00040005042.1	UniProtKB/TrEMBL
	ENSCAFT00040005092.1	UniProtKB/TrEMBL
	ENSCAFT00040005105.1	UniProtKB/TrEMBL
	ENSCAFT00040005115.1	UniProtKB/TrEMBL
	ENSCAFT00040005134.1	UniProtKB/TrEMBL
	ENSCAFT00845021855	ENTREZGENE
	ENSCAFT00845021855.1	UniProtKB/TrEMBL
	ENSCAFT00845021943.1	UniProtKB/TrEMBL
	ENSCAFT00845022020.1	UniProtKB/TrEMBL
	ENSCAFT00845022044.1	UniProtKB/TrEMBL
	ENSCAFT00845022096	ENTREZGENE
	ENSCAFT00845022096.1	UniProtKB/TrEMBL
	ENSCAFT00845022152.1	UniProtKB/TrEMBL
	ENSCAFT00845022177	ENTREZGENE
	ENSCAFT00845022177.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/TrEMBL
InterPro	BBS8	UniProtKB/TrEMBL
	TPR-like_helical_dom_sf	UniProtKB/TrEMBL
	TPR_repeat	UniProtKB/TrEMBL
KEGG Report	cfa:480413	UniProtKB/TrEMBL
NCBI Gene	TTC8	ENTREZGENE
PANTHER	PTHR44177	UniProtKB/TrEMBL
	TETRATRICOPEPTIDE REPEAT PROTEIN 8	UniProtKB/TrEMBL
Pfam	TPR_16	UniProtKB/TrEMBL
	TPR_8	UniProtKB/TrEMBL
PROSITE	TPR	UniProtKB/TrEMBL
SMART	TPR	UniProtKB/TrEMBL
Superfamily-SCOP	HCP-like	UniProtKB/TrEMBL
	SSF48452	UniProtKB/TrEMBL
UniProt	A0A8C0KVK4	ENTREZGENE
	A0A8C0LXV7_CANLF	UniProtKB/TrEMBL
	A0A8C0PUN3_CANLF	UniProtKB/TrEMBL
	A0A8C0PUU0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0RAQ7_CANLF	UniProtKB/TrEMBL
	A0A8I3NB98_CANLF	UniProtKB/TrEMBL
	A0A8I3NKT7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NLA0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NM60	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NP75_CANLF	UniProtKB/TrEMBL
	A0A8I3NPG7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3RZE7_CANLF	UniProtKB/TrEMBL
	A0A8P0NIU6_CANLF	UniProtKB/TrEMBL
	A0A8P0SWK4	ENTREZGENE
	A0A8P0T9G9_CANLF	UniProtKB/TrEMBL
	E2REN6_CANLF	UniProtKB/TrEMBL
	R4ITK9	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A8C0QAK4	UniProtKB/TrEMBL
	A0A8P0STT3	UniProtKB/TrEMBL
	A0A8P0SWK4	UniProtKB/TrEMBL
	A0A8P0TGC0	UniProtKB/TrEMBL
	R4ITJ8	UniProtKB/TrEMBL
VGNC ID	VGNC:47963	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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