C1H1orf50 (chromosome 1 C1orf50 homolog) - Rat Genome Database

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Gene: C1H1orf50 (chromosome 1 C1orf50 homolog) Pan paniscus
Analyze
Symbol: C1H1orf50 (Ensembl: C1orf50)
Name: chromosome 1 C1orf50 homolog (Ensembl:chromosome 1 open reading frame 50)
RGD ID: 12047261
Description: ENCODES a protein that exhibits identical protein binding (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome 1 open reading frame, human C1orf50; uncharacterized protein C1orf50 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21184,020,279 - 184,045,533 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11183,161,945 - 183,187,196 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0142,065,931 - 42,080,656 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1143,443,615 - 43,458,168 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl143,443,611 - 43,452,684 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
C1H1orf50
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21184,020,279 - 184,045,533 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11183,161,945 - 183,187,196 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0142,065,931 - 42,080,656 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1143,443,615 - 43,458,168 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl143,443,611 - 43,452,684 (+)Ensemblpanpan1.1panPan2
C1orf50
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38142,767,249 - 42,779,491 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl142,767,245 - 42,779,491 (+)EnsemblGRCh38hg38GRCh38
GRCh37143,232,920 - 43,245,162 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36143,005,527 - 43,013,998 (+)NCBINCBI36Build 36hg18NCBI36
Build 34142,902,032 - 42,910,503NCBI
Celera141,514,848 - 41,523,350 (+)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef141,352,899 - 41,361,394 (+)NCBIHuRef
CHM1_1143,349,721 - 43,358,217 (+)NCBICHM1_1
T2T-CHM13v2.0142,637,739 - 42,649,982 (+)NCBIT2T-CHM13v2.0
AU022252
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394119,077,039 - 119,089,884 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4119,060,767 - 119,089,909 (-)EnsemblGRCm39 Ensembl
GRCm384119,222,882 - 119,232,885 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4119,203,570 - 119,232,712 (-)EnsemblGRCm38mm10GRCm38
MGSCv374118,897,743 - 118,905,329 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364118,724,140 - 118,730,638 (-)NCBIMGSCv36mm8
Celera4117,952,879 - 117,960,464 (-)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map455.34NCBI
C5h1orf50
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85138,122,595 - 138,126,973 (-)NCBIGRCr8
mRatBN7.25132,837,135 - 132,841,744 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5132,836,506 - 132,841,762 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5135,564,928 - 135,569,301 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05137,321,392 - 137,325,765 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05137,341,978 - 137,346,351 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05138,274,907 - 138,279,285 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5138,274,907 - 138,279,285 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05142,085,034 - 142,091,328 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45139,811,356 - 139,816,011 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5131,362,886 - 131,367,264 (-)NCBICelera
Cytogenetic Map5q36NCBI
LOC102015143
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555372,292,519 - 2,301,977 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555372,292,430 - 2,301,938 (+)NCBIChiLan1.0ChiLan1.0
C15H1orf50
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.115595,391 - 603,176 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl15595,309 - 603,237 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha15850,786 - 858,795 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.015677,371 - 685,378 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl15677,525 - 685,511 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.115586,853 - 594,852 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.015648,366 - 656,345 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.015663,408 - 671,414 (-)NCBIUU_Cfam_GSD_1.0
CUNH1orf50
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505858,268,729 - 58,281,343 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647424,093,600 - 24,104,303 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647424,093,572 - 24,108,915 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C6H1orf50
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.16168,656,998 - 168,668,079 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26156,178,361 - 156,183,124 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH1orf50
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12090,158,211 - 90,166,451 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2090,158,554 - 90,166,389 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603326,744,006 - 26,753,089 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH1orf50
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248922,003,470 - 2,007,392 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248922,003,424 - 2,007,392 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000047575   ⟹   ENSPPAP00000024750
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl143,443,611 - 43,452,684 (+)Ensembl
RefSeq Acc Id: XM_055094470   ⟹   XP_054950445
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21184,030,784 - 184,045,533 (-)NCBI
NHGRI_mPanPan11183,172,450 - 183,187,196 (-)NCBI
RefSeq Acc Id: XM_057299182   ⟹   XP_057155165
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21184,020,279 - 184,045,533 (-)NCBI
NHGRI_mPanPan11183,161,945 - 183,187,196 (-)NCBI
Protein Sequences
Protein RefSeqs XP_054950445 (Get FASTA)   NCBI Sequence Viewer  
  XP_057155165 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000024750.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000024750   ⟸   ENSPPAT00000047575
RefSeq Acc Id: XP_054950445   ⟸   XM_055094470
- UniProtKB: A0A2R9B904 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057155165   ⟸   XM_057299182
- UniProtKB: A0A2R9B904 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035504 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000047575.1 UniProtKB/TrEMBL
InterPro DUF2452 UniProtKB/TrEMBL
KEGG Report pps:100994922 UniProtKB/TrEMBL
NCBI Gene C1H1orf50 ENTREZGENE
PANTHER PTHR14553 UniProtKB/TrEMBL
  SIMILAR TO CHROMOSOME 1 OPEN READING FRAME 50 UniProtKB/TrEMBL
Pfam DUF2452 UniProtKB/TrEMBL
UniProt A0A2R9B904 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 C1H1orf50  chromosome 1 C1orf50 homolog    chromosome 1 open reading frame, human C1orf50  Symbol and/or name change 5135510 APPROVED