AJUBA (ajuba LIM protein) - Rat Genome Database

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Gene: AJUBA (ajuba LIM protein) Pan paniscus
Analyze
Symbol: AJUBA
Name: ajuba LIM protein
RGD ID: 12045186
Description: ENCODES a protein that exhibits actin filament binding (inferred); alpha-catenin binding (inferred); chromatin binding (inferred); INVOLVED IN calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules (ortholog); focal adhesion assembly (ortholog); glycerophospholipid biosynthetic process (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); esophagus squamous cell carcinoma (ortholog); genetic disease (ortholog); FOUND IN adherens junction (inferred); cell-cell junction (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LIM domain-containing protein ajuba
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21524,403,945 - 24,415,391 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11423,613,714 - 23,631,909 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0143,791,309 - 3,802,763 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11421,889,443 - 21,900,700 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1421,889,443 - 21,900,700 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
AJUBA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21524,403,945 - 24,415,391 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11423,613,714 - 23,631,909 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0143,791,309 - 3,802,763 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11421,889,443 - 21,900,700 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1421,889,443 - 21,900,700 (-)Ensemblpanpan1.1panPan2
AJUBA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381422,971,177 - 22,982,551 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1422,971,177 - 22,982,551 (-)EnsemblGRCh38hg38GRCh38
GRCh371423,440,386 - 23,451,760 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361422,510,249 - 22,521,691 (-)NCBINCBI36Build 36hg18NCBI36
Build 341422,510,248 - 22,516,272NCBI
Celera143,303,299 - 3,314,741 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef143,557,642 - 3,569,085 (-)NCBIHuRef
CHM1_11423,439,040 - 23,450,482 (-)NCBICHM1_1
T2T-CHM13v2.01417,171,795 - 17,183,169 (-)NCBIT2T-CHM13v2.0
Ajuba
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,804,926 - 54,815,118 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,804,929 - 54,815,015 (-)EnsemblGRCm39 Ensembl
GRCm381454,567,469 - 54,577,661 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,567,472 - 54,577,558 (-)EnsemblGRCm38mm10GRCm38
MGSCv371455,186,309 - 55,196,253 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361453,521,677 - 53,531,621 (-)NCBIMGSCv36mm8
Celera1452,356,267 - 52,366,350 (-)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1427.84NCBI
Ajuba
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81531,989,796 - 32,000,042 (-)NCBIGRCr8
mRatBN7.21528,019,775 - 28,031,537 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,019,778 - 28,030,021 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1529,858,600 - 29,868,825 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,005,812 - 31,016,041 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01529,255,934 - 29,266,128 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01533,208,210 - 33,218,456 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,208,216 - 33,218,456 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01537,092,299 - 37,103,304 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41532,627,633 - 32,637,861 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11532,644,597 - 32,652,711 (-)NCBI
Celera1527,595,895 - 27,610,669 (-)NCBICelera
Cytogenetic Map15p13NCBI
Ajuba
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540937,318,597 - 37,329,155 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540937,318,597 - 37,329,068 (+)NCBIChiLan1.0ChiLan1.0
AJUBA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.183,272,408 - 3,302,179 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl83,272,405 - 3,301,708 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha83,219,989 - 3,250,272 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.083,379,492 - 3,410,108 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl83,380,278 - 3,410,168 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,070,717 - 3,101,039 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,132,252 - 3,162,764 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.083,394,515 - 3,424,826 (-)NCBIUU_Cfam_GSD_1.0
Ajuba
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864035,047,132 - 35,057,420 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367221,331,566 - 1,341,863 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367221,331,568 - 1,341,854 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AJUBA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl776,063,058 - 76,076,585 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1776,063,009 - 76,072,884 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
AJUBA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12923,341,841 - 23,352,630 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2923,341,249 - 23,352,685 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605923,067,978 - 23,079,304 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ajuba
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248209,552,287 - 9,563,472 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248209,551,664 - 9,562,773 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000039535   ⟹   ENSPPAP00000016836
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1421,889,443 - 21,900,700 (-)Ensembl
RefSeq Acc Id: XM_003808109   ⟹   XP_003808157
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21524,403,945 - 24,415,378 (-)NCBI
NHGRI_mPanPan11423,613,714 - 23,631,909 (-)NCBI
Mhudiblu_PPA_v0143,791,309 - 3,802,763 (-)NCBI
PanPan1.11421,889,443 - 21,900,700 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008960207   ⟹   XP_008958455
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21524,411,357 - 24,415,391 (-)NCBI
NHGRI_mPanPan11423,627,872 - 23,631,798 (-)NCBI
Mhudiblu_PPA_v0143,798,635 - 3,802,690 (-)NCBI
PanPan1.11421,896,680 - 21,900,694 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003808157 (Get FASTA)   NCBI Sequence Viewer  
  XP_008958455 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000016836
  ENSPPAP00000016836.1
Reference Protein Sequences
RefSeq Acc Id: XP_003808157   ⟸   XM_003808109
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AHL0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008958455   ⟸   XM_008960207
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSPPAP00000016836   ⟸   ENSPPAT00000039535
Protein Domains
LIM zinc-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031512 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000039535.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine Rich Protein UniProtKB/TrEMBL
InterPro Ajuba-like UniProtKB/TrEMBL
  Ajuba-like_LIM1 UniProtKB/TrEMBL
  Ajuba-like_LIM2 UniProtKB/TrEMBL
  Ajuba-like_LIM3 UniProtKB/TrEMBL
  Znf_LIM UniProtKB/TrEMBL
KEGG Report pps:100985823 UniProtKB/TrEMBL
NCBI Gene AJUBA ENTREZGENE
PANTHER LIM DOMAIN-CONTAINING PROTEIN AJUBA UniProtKB/TrEMBL
  LIM DOMAIN-CONTAINING PROTEIN JUB UniProtKB/TrEMBL
Pfam LIM UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_2 UniProtKB/TrEMBL
SMART LIM UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
UniProt A0A2R9AHL0 ENTREZGENE, UniProtKB/TrEMBL