NAP1L4 (nucleosome assembly protein 1 like 4) - Rat Genome Database

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Gene: NAP1L4 (nucleosome assembly protein 1 like 4) Pan paniscus
Analyze
Symbol: NAP1L4
Name: nucleosome assembly protein 1 like 4
RGD ID: 12028957
Description: ENCODES a protein that exhibits chromatin binding (inferred); histone binding (inferred); nucleosome binding (inferred); INVOLVED IN nucleosome assembly (inferred); ASSOCIATED WITH delta beta-thalassemia (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nucleosome assembly protein 1-like 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v295,355,764 - 5,404,004 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1114,567,666 - 4,615,940 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0112,970,001 - 3,018,239 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1112,997,726 - 3,044,909 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl112,997,726 - 3,044,848 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NAP1L4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v295,355,764 - 5,404,004 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1114,567,666 - 4,615,940 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0112,970,001 - 3,018,239 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1112,997,726 - 3,044,909 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl112,997,726 - 3,044,848 (-)Ensemblpanpan1.1panPan2
NAP1L4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38112,944,437 - 2,992,329 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl112,944,431 - 2,992,377 (-)EnsemblGRCh38hg38GRCh38
GRCh37112,965,667 - 3,013,559 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36112,922,236 - 2,970,183 (-)NCBINCBI36Build 36hg18NCBI36
Build 34112,922,236 - 2,970,183NCBI
Celera112,999,494 - 3,047,467 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef112,754,174 - 2,802,207 (-)NCBIHuRef
CHM1_1112,964,552 - 3,012,498 (-)NCBICHM1_1
T2T-CHM13v2.0113,033,655 - 3,081,571 (-)NCBIT2T-CHM13v2.0
Nap1l4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397143,067,316 - 143,103,698 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7143,067,316 - 143,102,843 (-)EnsemblGRCm39 Ensembl
GRCm387143,513,579 - 143,549,882 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7143,513,579 - 143,549,106 (-)EnsemblGRCm38mm10GRCm38
MGSCv377150,699,484 - 150,734,995 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367143,322,969 - 143,358,480 (-)NCBIMGSCv36mm8
Celera7143,269,268 - 143,304,779 (-)NCBICelera
Cytogenetic Map7F5NCBI
cM Map788.24NCBI
Nap1l4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81208,139,105 - 208,175,597 (-)NCBIGRCr8
mRatBN7.21198,709,697 - 198,746,093 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1198,709,701 - 198,746,020 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1207,088,309 - 207,123,762 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01214,174,926 - 214,210,395 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01206,849,083 - 206,884,552 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01216,715,352 - 216,751,742 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1216,715,363 - 216,750,844 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01223,575,623 - 223,611,898 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41203,890,799 - 203,926,237 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11204,044,255 - 204,079,690 (-)NCBI
Celera1196,278,023 - 196,313,653 (-)NCBICelera
Cytogenetic Map1q42NCBI
Nap1l4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542214,628,371 - 14,673,165 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542214,630,858 - 14,673,171 (-)NCBIChiLan1.0ChiLan1.0
NAP1L4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11846,910,366 - 46,946,710 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1846,911,278 - 46,945,525 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1845,519,898 - 45,561,934 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01847,590,112 - 47,632,168 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1847,590,112 - 47,632,126 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11847,035,374 - 47,077,393 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01846,618,061 - 46,660,089 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01847,364,660 - 47,406,835 (-)NCBIUU_Cfam_GSD_1.0
Nap1l4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049473,130,922 - 3,163,412 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367941,074,128 - 1,106,519 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367941,074,126 - 1,106,613 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAP1L4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl22,070,142 - 2,117,615 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.122,070,140 - 2,117,503 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22439,709 - 487,237 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NAP1L4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112,756,859 - 2,802,751 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12,755,735 - 2,791,346 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603899,956,748 - 100,003,968 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nap1l4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476715,690,848 - 15,735,969 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476715,690,848 - 15,735,618 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003816044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008969078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008969079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008969080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008969082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008969083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034931964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034931965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034931966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055093972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055093973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055093974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055093975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057299062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057299063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063608054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063608055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063608056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000040990   ⟹   ENSPPAP00000018261
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl112,997,726 - 3,044,848 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000040991   ⟹   ENSPPAP00000018262
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl112,997,726 - 3,044,445 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000041004   ⟹   ENSPPAP00000018275
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl113,004,446 - 3,032,720 (-)Ensembl
RefSeq Acc Id: XM_003816044   ⟹   XP_003816092
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v295,356,793 - 5,404,004 (-)NCBI
NHGRI_mPanPan1114,567,666 - 4,615,940 (-)NCBI
Mhudiblu_PPA_v0112,970,001 - 3,018,239 (-)NCBI
PanPan1.1112,997,726 - 3,044,848 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008969078   ⟹   XP_008967326
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v295,355,764 - 5,404,004 (-)NCBI
NHGRI_mPanPan1114,567,666 - 4,615,940 (-)NCBI
Mhudiblu_PPA_v0112,970,001 - 3,018,239 (-)NCBI
PanPan1.1112,997,726 - 3,044,909 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008969079   ⟹   XP_008967327
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v295,355,764 - 5,403,731 (-)NCBI
NHGRI_mPanPan1114,567,666 - 4,615,667 (-)NCBI
Mhudiblu_PPA_v0112,970,001 - 3,017,961 (-)NCBI
PanPan1.1112,997,726 - 3,044,679 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008969083   ⟹   XP_008967331
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v295,355,764 - 5,403,714 (-)NCBI
NHGRI_mPanPan1114,567,666 - 4,615,647 (-)NCBI
Mhudiblu_PPA_v0112,970,001 - 3,017,578 (-)NCBI
PanPan1.1112,997,726 - 3,044,435 (-)NCBI
Sequence:
RefSeq Acc Id: XM_055093972   ⟹   XP_054949947
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v295,355,764 - 5,403,714 (-)NCBI
NHGRI_mPanPan1114,567,666 - 4,615,647 (-)NCBI
RefSeq Acc Id: XM_055093973   ⟹   XP_054949948
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v295,355,764 - 5,403,714 (-)NCBI
NHGRI_mPanPan1114,567,666 - 4,615,374 (-)NCBI
RefSeq Acc Id: XM_055093974   ⟹   XP_054949949
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v295,355,764 - 5,403,714 (-)NCBI
NHGRI_mPanPan1114,567,666 - 4,615,647 (-)NCBI
RefSeq Acc Id: XM_055093975   ⟹   XP_054949950
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v295,355,764 - 5,403,874 (-)NCBI
NHGRI_mPanPan1114,567,666 - 4,615,810 (-)NCBI
RefSeq Acc Id: XM_057299062   ⟹   XP_057155045
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v295,355,764 - 5,403,953 (-)NCBI
NHGRI_mPanPan1114,567,666 - 4,615,889 (-)NCBI
RefSeq Acc Id: XM_057299063   ⟹   XP_057155046
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v295,355,764 - 5,403,414 (-)NCBI
NHGRI_mPanPan1114,567,666 - 4,615,350 (-)NCBI
RefSeq Acc Id: XM_063608054   ⟹   XP_063464124
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v295,355,764 - 5,403,876 (-)NCBI
RefSeq Acc Id: XM_063608055   ⟹   XP_063464125
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v295,355,764 - 5,403,957 (-)NCBI
RefSeq Acc Id: XM_063608056   ⟹   XP_063464126
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v295,355,764 - 5,403,887 (-)NCBI
RefSeq Acc Id: XP_008967326   ⟸   XM_008969078
- Peptide Label: isoform X1
- UniProtKB: A0A2R9ALN5 (UniProtKB/TrEMBL),   A0A2R9AR79 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003816092   ⟸   XM_003816044
- Peptide Label: isoform X2
- UniProtKB: A0A2R9ALP1 (UniProtKB/TrEMBL),   A0A2R9AR79 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008967327   ⟸   XM_008969079
- Peptide Label: isoform X1
- UniProtKB: A0A2R9ALN5 (UniProtKB/TrEMBL),   A0A2R9AR79 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008967331   ⟸   XM_008969083
- Peptide Label: isoform X1
- UniProtKB: A0A2R9ALN5 (UniProtKB/TrEMBL),   A0A2R9AR79 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000018262   ⟸   ENSPPAT00000040991
RefSeq Acc Id: ENSPPAP00000018261   ⟸   ENSPPAT00000040990
RefSeq Acc Id: ENSPPAP00000018275   ⟸   ENSPPAT00000041004
RefSeq Acc Id: XP_054949950   ⟸   XM_055093975
- Peptide Label: isoform X1
- UniProtKB: A0A2R9ALN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054949949   ⟸   XM_055093974
- Peptide Label: isoform X1
- UniProtKB: A0A2R9ALN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054949947   ⟸   XM_055093972
- Peptide Label: isoform X1
- UniProtKB: A0A2R9ALN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054949948   ⟸   XM_055093973
- Peptide Label: isoform X1
- UniProtKB: A0A2R9ALN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057155045   ⟸   XM_057299062
- Peptide Label: isoform X1
- UniProtKB: A0A2R9ALN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057155046   ⟸   XM_057299063
- Peptide Label: isoform X1
- UniProtKB: A0A2R9ALN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063464125   ⟸   XM_063608055
- Peptide Label: isoform X1
- UniProtKB: A0A2R9ALN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063464126   ⟸   XM_063608056
- Peptide Label: isoform X1
- UniProtKB: A0A2R9ALN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063464124   ⟸   XM_063608054
- Peptide Label: isoform X1
- UniProtKB: A0A2R9ALN5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032258 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000040990.1 UniProtKB/TrEMBL
  ENSPPAT00000040991.1 UniProtKB/TrEMBL
  ENSPPAT00000041004.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.1500 UniProtKB/TrEMBL
  Nucleosome assembly protein UniProtKB/TrEMBL
InterPro NAP-like_sf UniProtKB/TrEMBL
  NAP_family UniProtKB/TrEMBL
KEGG Report pps:100990494 UniProtKB/TrEMBL
NCBI Gene NAP1L4 ENTREZGENE
PANTHER NUCLEOSOME ASSEMBLY PROTEIN 1-LIKE 4 UniProtKB/TrEMBL
  PTHR11875 UniProtKB/TrEMBL
Pfam NAP UniProtKB/TrEMBL
Superfamily-SCOP SSF143113 UniProtKB/TrEMBL
UniProt A0A2R9ALN5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9ALP1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AR79 ENTREZGENE, UniProtKB/TrEMBL